Best practices for scientific computing
Wilson, Greg, Aruliah, D A, Brown, C Titus, Chue Hong, Neil P, Davis, Matt, Guy, Richard T, Haddock, Steven H D, Huff, Kathryn D, Mitchell, Ian M, Plumbley, Mark D, Waugh, Ben, White, Ethan P, Wilson, Paul
Published in PLoS biology (01.01.2014)
Published in PLoS biology (01.01.2014)
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Journal Article
The Four Pillars of Research Software Engineering
Cohen, Jeremy, Katz, Daniel S., Barker, Michelle, Chue Hong, Neil, Haines, Robert, Jay, Caroline
Published in IEEE software (01.01.2021)
Published in IEEE software (01.01.2021)
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Journal Article
Introducing the FAIR Principles for research software
Barker, Michelle, Chue Hong, Neil P., Katz, Daniel S., Lamprecht, Anna-Lena, Martinez-Ortiz, Carlos, Psomopoulos, Fotis, Harrow, Jennifer, Castro, Leyla Jael, Gruenpeter, Morane, Martinez, Paula Andrea, Honeyman, Tom
Published in Scientific data (14.10.2022)
Published in Scientific data (14.10.2022)
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Journal Article
Recognizing the value of software: a software citation guide [version 2; peer review: 2 approved]
Katz, Daniel S, Chue Hong, Neil P, Clark, Tim, Muench, August, Stall, Shelley, Bouquin, Daina, Cannon, Matthew, Edmunds, Scott, Faez, Telli, Feeney, Patricia, Fenner, Martin, Friedman, Michael, Grenier, Gerry, Harrison, Melissa, Heber, Joerg, Leary, Adam, MacCallum, Catriona, Murray, Hollydawn, Pastrana, Erika, Perry, Katherine, Schuster, Douglas, Stockhause, Martina, Yeston, Jake
Published in F1000 research (2021)
Published in F1000 research (2021)
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Journal Article
The conservation of human functional variants and their effects across livestock species
Zhao, Rongrong, Talenti, Andrea, Fang, Lingzhao, Liu, Shuli, Liu, George, Chue Hong, Neil P., Tenesa, Albert, Hassan, Musa, Prendergast, James G. D.
Published in Communications biology (21.09.2022)
Published in Communications biology (21.09.2022)
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Journal Article
Journal Production Guidance for Software and Data Citations
Stall, Shelley, Bilder, Geoffrey, Cannon, Matthew, Chue Hong, Neil, Edmunds, Scott, Erdmann, Christopher C., Evans, Michael, Farmer, Rosemary, Feeney, Patricia, Friedman, Michael, Giampoala, Matthew, Hanson, R. Brooks, Harrison, Melissa, Karaiskos, Dimitris, Katz, Daniel S., Letizia, Viviana, Lizzi, Vincent, MacCallum, Catriona, Muench, August, Perry, Kate, Ratner, Howard, Schindler, Uwe, Sedora, Brian, Stockhause, Martina, Townsend, Randy, Yeston, Jake, Clark, Timothy
Published in Scientific data (26.09.2023)
Published in Scientific data (26.09.2023)
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Journal Article
Software and Data Citation
Katz, Daniel S., Chue Hong, Neil P., Clark, Tim, Fenner, Martin, Martone, Maryann E.
Published in Computing in science & engineering (01.03.2020)
Published in Computing in science & engineering (01.03.2020)
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Journal Article
Top 10 metrics for life science software good practices [version 1; peer review: 2 approved]
Artaza, Haydee, Chue Hong, Neil, Corpas, Manuel, Corpuz, Angel, Hooft, Rob, Jiménez, Rafael C, Leskošek, Brane, Olivier, Brett G, Stourac, Jan, Svobodová Vařeková, Radka, Van Parys, Thomas, Vaughan, Daniel
Published in F1000 research (2016)
Published in F1000 research (2016)
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Journal Article
RAPPORT: running scientific high-performance computing applications on the cloud
Cohen, Jeremy, Filippis, Ioannis, Woodbridge, Mark, Bauer, Daniela, Chue Hong, Neil, Jackson, Mike, Butcher, Sarah, Colling, David, Darlington, John, Fuchs, Brian, Harvey, Matt
Published in Philosophical transactions of the Royal Society of London. Series A: Mathematical, physical, and engineering sciences (28.01.2013)
Published in Philosophical transactions of the Royal Society of London. Series A: Mathematical, physical, and engineering sciences (28.01.2013)
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Journal Article
Fourth Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE4)
Katz, Daniel S, Niemeyer, Kyle E, Gesing, Sandra, Hwang, Lorraine, Bangerth, Wolfgang, Hettrick, Simon, Idaszak, Ray, Salac, Jean, Chue Hong, Neil, Núñez-Corrales, Santiago, Allen, Alice, Geiger, R. Stuart, Miller, Jonah, Chen, Emily, Dubey, Anshu, Lago, Patricia
Published in Journal of open research software (15.02.2018)
Published in Journal of open research software (15.02.2018)
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Journal Article
An Open Science Peer Review Oath
Aleksic, Jelena, Alexa, Adrian, Attwood, Teresa K, Chue Hong, Neil, Dahlö, Martin, Davey, Robert, Dinkel, Holger, Förstner, Konrad U, Grigorov, Ivo, Hériché, Jean-Karim, Lahti, Leo, MacLean, Dan, Markie, Michael L, Molloy, Jenny, Schneider, Maria Victoria, Scott, Camille, Smith-Unna, Richard, Vieira, Bruno Miguel
Published in F1000 research (09.01.2015)
Published in F1000 research (09.01.2015)
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Journal Article
Four simple recommendations to encourage best practices in research software [version 1; peer review: 3 approved]
Jiménez, Rafael C, Kuzak, Mateusz, Alhamdoosh, Monther, Barker, Michelle, Batut, Bérénice, Borg, Mikael, Capella-Gutierrez, Salvador, Chue Hong, Neil, Cook, Martin, Corpas, Manuel, Flannery, Madison, Garcia, Leyla, Gelpí, Josep Ll, Gladman, Simon, Goble, Carole, González Ferreiro, Montserrat, Gonzalez-Beltran, Alejandra, Griffin, Philippa C, Grüning, Björn, Hagberg, Jonas, Holub, Petr, Hooft, Rob, Ison, Jon, Katz, Daniel S, Leskošek, Brane, López Gómez, Federico, Oliveira, Luis J, Mellor, David, Mosbergen, Rowland, Mulder, Nicola, Perez-Riverol, Yasset, Pergl, Robert, Pichler, Horst, Pope, Bernard, Sanz, Ferran, Schneider, Maria V, Stodden, Victoria, Suchecki, Radosław, Svobodová Vařeková, Radka, Talvik, Harry-Anton, Todorov, Ilian, Treloar, Andrew, Tyagi, Sonika, van Gompel, Maarten, Vaughan, Daniel, Via, Allegra, Wang, Xiaochuan, Watson-Haigh, Nathan S, Crouch, Steve
Published in F1000 research (2017)
Published in F1000 research (2017)
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Journal Article
A Workshop Series for Grid/Repository Integration
Aschenbrenner, Andreas, Blanke, Tobias, Hong, Neil P. Chue, Ferguson, Nicholas, Hedges, Mark
Published in D-Lib magazine (01.01.2009)
Published in D-Lib magazine (01.01.2009)
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Journal Article
How does software fit into the FDO landscape?
Martinez-Ortiz, Carlos, Goble, Carole, Katz, Daniel, Honeyman, Tom, Martinez, Paula, Barker, Michelle, Castro, Leyla Jael, Chue Hong, Neil, Gruenpeter, Morane, Harrow, Jennifer, Lamprecht, Anna-Lena, Psomopoulos, Fotis
Published in Research Ideas and Outcomes (01.10.2022)
Published in Research Ideas and Outcomes (01.10.2022)
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Journal Article