Annotation of functional variation in personal genomes using RegulomeDB
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Published in Genome research (01.09.2012)
Published in Genome research (01.09.2012)
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Resources for the Comprehensive Discovery of Functional RNA Elements
Sundararaman, Balaji, Zhan, Lijun, Blue, Steven M., Stanton, Rebecca, Elkins, Keri, Olson, Sara, Wei, Xintao, Van Nostrand, Eric L., Pratt, Gabriel A., Huelga, Stephanie C., Smalec, Brendan M., Wang, Xiaofeng, Hong, Eurie L., Davidson, Jean M., Lécuyer, Eric, Graveley, Brenton R., Yeo, Gene W.
Published in Molecular cell (17.03.2016)
Published in Molecular cell (17.03.2016)
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Clustering of 770,000 genomes reveals post-colonial population structure of North America
Han, Eunjung, Carbonetto, Peter, Curtis, Ross E., Wang, Yong, Granka, Julie M., Byrnes, Jake, Noto, Keith, Kermany, Amir R., Myres, Natalie M., Barber, Mathew J., Rand, Kristin A., Song, Shiya, Roman, Theodore, Battat, Erin, Elyashiv, Eyal, Guturu, Harendra, Hong, Eurie L., Chahine, Kenneth G., Ball, Catherine A.
Published in Nature communications (07.02.2017)
Published in Nature communications (07.02.2017)
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Ancestry inference using reference labeled clusters of haplotypes
Wang, Yong, Song, Shiya, Schraiber, Joshua G, Sedghifar, Alisa, Byrnes, Jake K, Turissini, David A, Hong, Eurie L, Ball, Catherine A, Noto, Keith
Published in BMC bioinformatics (25.09.2021)
Published in BMC bioinformatics (25.09.2021)
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YeastMine--an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit
Balakrishnan, Rama, Park, Julie, Karra, Kalpana, Hitz, Benjamin C, Binkley, Gail, Hong, Eurie L, Sullivan, Julie, Micklem, Gos, Cherry, J Michael
Published in Database : the journal of biological databases and curation (2012)
Published in Database : the journal of biological databases and curation (2012)
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Expanded COVID-19 phenotype definitions reveal distinct patterns of genetic association and protective effects
Roberts, Genevieve H. L., Partha, Raghavendran, Rhead, Brooke, Knight, Spencer C., Park, Danny S., Coignet, Marie V., Zhang, Miao, Berkowitz, Nathan, Turrisini, David A., Gaddis, Michael, McCurdy, Shannon R., Pavlovic, Milos, Ruiz, Luong, Sass, Chodon, Haug Baltzell, Asher K., Guturu, Harendra, Girshick, Ahna R., Ball, Catherine A., Hong, Eurie L., Rand, Kristin A.
Published in Nature genetics (01.04.2022)
Published in Nature genetics (01.04.2022)
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ENCODE data at the ENCODE portal
Sloan, Cricket A, Chan, Esther T, Davidson, Jean M, Malladi, Venkat S, Strattan, J Seth, Hitz, Benjamin C, Gabdank, Idan, Narayanan, Aditi K, Ho, Marcus, Lee, Brian T, Rowe, Laurence D, Dreszer, Timothy R, Roe, Greg, Podduturi, Nikhil R, Tanaka, Forrest, Hong, Eurie L, Cherry, J Michael
Published in Nucleic acids research (04.01.2016)
Published in Nucleic acids research (04.01.2016)
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Genome-wide analysis provides genetic evidence that ACE2 influences COVID-19 risk and yields risk scores associated with severe disease
Horowitz, Julie E., Kosmicki, Jack A., Damask, Amy, Sharma, Deepika, Roberts, Genevieve H. L., Justice, Anne E., Banerjee, Nilanjana, Coignet, Marie V., Yadav, Ashish, Leader, Joseph B., Marcketta, Anthony, Park, Danny S., Lanche, Rouel, Maxwell, Evan, Knight, Spencer C., Bai, Xiaodong, Guturu, Harendra, Sun, Dylan, Baltzell, Asher, Kury, Fabricio S. P., Backman, Joshua D., Girshick, Ahna R., O’Dushlaine, Colm, McCurdy, Shannon R., Partha, Raghavendran, Mansfield, Adam J., Turissini, David A., Li, Alexander H., Zhang, Miao, Mbatchou, Joelle, Watanabe, Kyoko, Gurski, Lauren, McCarthy, Shane E., Kang, Hyun M., Dobbyn, Lee, Stahl, Eli, Verma, Anurag, Sirugo, Giorgio, Ritchie, Marylyn D., Jones, Marcus, Balasubramanian, Suganthi, Siminovitch, Katherine, Salerno, William J., Shuldiner, Alan R., Rader, Daniel J., Mirshahi, Tooraj, Locke, Adam E., Marchini, Jonathan, Overton, John D., Carey, David J., Habegger, Lukas, Cantor, Michael N., Rand, Kristin A., Hong, Eurie L., Reid, Jeffrey G., Ball, Catherine A., Baras, Aris, Abecasis, Gonçalo R., Ferreira, Manuel A. R.
Published in Nature genetics (01.04.2022)
Published in Nature genetics (01.04.2022)
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Expanded COVID-19 phenotype definitions reveal distinct patterns of genetic association and protective effects
Roberts, Genevieve H. L., Partha, Raghavendran, Rhead, Brooke, Knight, Spencer C., Park, Danny S., Coignet, Marie V., Zhang, Miao, Berkowitz, Nathan, Turrisini, David A., Gaddis, Michael, McCurdy, Shannon R., Pavlovic, Milos, Ruiz, Luong, Sass, Chodon, Haug Baltzell, Asher K., Guturu, Harendra, Girshick, Ahna R., Ball, Catherine A., Hong, Eurie L., Rand, Kristin A.
Published in Nature genetics (01.04.2022)
Published in Nature genetics (01.04.2022)
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Saccharomyces Genome Database: the genomics resource of budding yeast
Cherry, J. Michael, Hong, Eurie L., Amundsen, Craig, Balakrishnan, Rama, Binkley, Gail, Chan, Esther T., Christie, Karen R., Costanzo, Maria C., Dwight, Selina S., Engel, Stacia R., Fisk, Dianna G., Hirschman, Jodi E., Hitz, Benjamin C., Karra, Kalpana, Krieger, Cynthia J., Miyasato, Stuart R., Nash, Rob S., Park, Julie, Skrzypek, Marek S., Simison, Matt, Weng, Shuai, Wong, Edith D.
Published in Nucleic acids research (01.01.2012)
Published in Nucleic acids research (01.01.2012)
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Calcium Ion Promotes Yeast Dmc1 Activity via Formation of Long and Fine Helical Filaments with Single-stranded DNA
Lee, Ming-Hui, Chang, Yuan-Chih, Hong, Eurie L., Grubb, Jennifer, Chang, Chia-Seng, Bishop, Douglas K., Wang, Ting-Fang
Published in The Journal of biological chemistry (09.12.2005)
Published in The Journal of biological chemistry (09.12.2005)
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Genetic risk factors for COVID-19 and influenza are largely distinct
Kosmicki, Jack A., Marcketta, Anthony, Sharma, Deepika, Di Gioia, Silvio Alessandro, Batista, Samantha, Yang, Xiao-Man, Tzoneva, Gannie, Martinez, Hector, Sidore, Carlo, Kessler, Michael D., Horowitz, Julie E., Roberts, Genevieve H. L., Justice, Anne E., Banerjee, Nilanjana, Coignet, Marie V., Leader, Joseph B., Park, Danny S., Lanche, Rouel, Maxwell, Evan, Knight, Spencer C., Bai, Xiaodong, Guturu, Harendra, Baltzell, Asher, Girshick, Ahna R., McCurdy, Shannon R., Partha, Raghavendran, Mansfield, Adam J., Turissini, David A., Zhang, Miao, Mbatchou, Joelle, Watanabe, Kyoko, Verma, Anurag, Sirugo, Giorgio, Ritchie, Marylyn D., Salerno, William J., Shuldiner, Alan R., Rader, Daniel J., Mirshahi, Tooraj, Marchini, Jonathan, Overton, John D., Carey, David J., Habegger, Lukas, Reid, Jeffrey G., Economides, Aris, Kyratsous, Christos, Karalis, Katia, Baum, Alina, Cantor, Michael N., Rand, Kristin A., Hong, Eurie L., Ball, Catherine A., Siminovitch, Katherine, Baras, Aris, Abecasis, Goncalo R., Ferreira, Manuel A. R.
Published in Nature genetics (01.08.2024)
Published in Nature genetics (01.08.2024)
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Gene Ontology annotations at SGD: new data sources and annotation methods
Hong, Eurie L, Balakrishnan, Rama, Dong, Qing, Christie, Karen R, Park, Julie, Binkley, Gail, Costanzo, Maria C, Dwight, Selina S, Engel, Stacia R, Fisk, Dianna G, Hirschman, Jodi E, Hitz, Benjamin C, Krieger, Cynthia J, Livstone, Michael S, Miyasato, Stuart R, Nash, Robert S, Oughtred, Rose, Skrzypek, Marek S, Weng, Shuai, Wong, Edith D, Zhu, Kathy K, Dolinski, Kara, Botstein, David, Cherry, J. Michael
Published in Nucleic acids research (01.01.2008)
Published in Nucleic acids research (01.01.2008)
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COVID-19 susceptibility and severity risks in a cross-sectional survey of over 500 000 US adults
Knight, Spencer C, McCurdy, Shannon R, Rhead, Brooke, Coignet, Marie V, Park, Danny S, Roberts, Genevieve H L, Berkowitz, Nathan D, Zhang, Miao, Turissini, David, Delgado, Karen, Pavlovic, Milos, Haug Baltzell, Asher K, Guturu, Harendra, Rand, Kristin A, Girshick, Ahna R, Hong, Eurie L, Ball, Catherine A, Banda, Yambazi, Bi, Ke, Burton, Robert, Champine, Marjan, Curtis, Ross, Drokhlyansky, Abby, Elrick, Ashley, Foo, Cat, Gaddis, Michael, Gu, Jialiang, Hateley, Shannon, Harris, Heather, King, Shea, Maldonado, Christine, McCartney-Melstad, Evan, McFarland, Alexandra, Miller, Patty, Nguyen, Luong, Noto, Keith, Pei, Jingwen, Petersen, Jenna, Pew, Scott, Sass, Chodon, Schraiber, Josh, Sedghifar, Alisa, Smelter, Andrey, South, Sarah, Starr, Barry, Vaughn, Cecily, Wang, Yong
Published in BMJ open (12.10.2022)
Published in BMJ open (12.10.2022)
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Saccharomyces Genome Database provides mutant phenotype data
Engel, Stacia R, Balakrishnan, Rama, Binkley, Gail, Christie, Karen R, Costanzo, Maria C, Dwight, Selina S, Fisk, Dianna G, Hirschman, Jodi E, Hitz, Benjamin C, Hong, Eurie L, Krieger, Cynthia J, Livstone, Michael S, Miyasato, Stuart R, Nash, Robert, Oughtred, Rose, Park, Julie, Skrzypek, Marek S, Weng, Shuai, Wong, Edith D, Dolinski, Kara, Botstein, David, Cherry, J. Michael
Published in Nucleic acids research (01.01.2010)
Published in Nucleic acids research (01.01.2010)
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SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata
Hitz, Benjamin C, Rowe, Laurence D, Podduturi, Nikhil R, Glick, David I, Baymuradov, Ulugbek K, Malladi, Venkat S, Chan, Esther T, Davidson, Jean M, Gabdank, Idan, Narayana, Aditi K, Onate, Kathrina C, Hilton, Jason, Ho, Marcus C, Lee, Brian T, Miyasato, Stuart R, Dreszer, Timothy R, Sloan, Cricket A, Strattan, J Seth, Tanaka, Forrest Y, Hong, Eurie L, Cherry, J Michael
Published in PloS one (12.04.2017)
Published in PloS one (12.04.2017)
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Journal Article
Principles of metadata organization at the ENCODE data coordination center
Hong, Eurie L, Sloan, Cricket A, Chan, Esther T, Davidson, Jean M, Malladi, Venkat S, Strattan, J Seth, Hitz, Benjamin C, Gabdank, Idan, Narayanan, Aditi K, Ho, Marcus, Lee, Brian T, Rowe, Laurence D, Dreszer, Timothy R, Roe, Greg R, Podduturi, Nikhil R, Tanaka, Forrest, Hilton, Jason A, Cherry, J Michael
Published in Database : the journal of biological databases and curation (2016)
Published in Database : the journal of biological databases and curation (2016)
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Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms
Christie, Karen R., Weng, Shuai, Balakrishnan, Rama, Costanzo, Maria C., Dolinski, Kara, Dwight, Selina S., Engel, Stacia R., Feierbach, Becket, Fisk, Dianna G., Hirschman, Jodi E., Hong, Eurie L., Issel‐Tarver, Laurie, Nash, Robert, Sethuraman, Anand, Starr, Barry, Theesfeld, Chandra L., Andrada, Rey, Binkley, Gail, Dong, Qing, Lane, Christopher, Schroeder, Mark, Botstein, David, Cherry, J. Michael
Published in Nucleic acids research (01.01.2004)
Published in Nucleic acids research (01.01.2004)
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Journal Article
Ontology application and use at the ENCODE DCC
Malladi, Venkat S, Erickson, Drew T, Podduturi, Nikhil R, Rowe, Laurence D, Chan, Esther T, Davidson, Jean M, Hitz, Benjamin C, Ho, Marcus, Lee, Brian T, Miyasato, Stuart, Roe, Gregory R, Simison, Matt, Sloan, Cricket A, Strattan, J Seth, Tanaka, Forrest, Kent, W James, Cherry, J Michael, Hong, Eurie L
Published in Database : the journal of biological databases and curation (2015)
Published in Database : the journal of biological databases and curation (2015)
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