Bioinformatics prediction and experimental validation of a novel microRNA: hsa‐miR‐B43 within human CDH4 gene with a potential metastasis‐related function in breast cancer
Rahimi, Azadeh, Sedighi, Rina, Emadi‐Baygi, Modjtaba, Honardoost, Mohammad‐Amin, Mowla, Seyed‐Javad, Khanahmad, Hossein, Nikpour, Parvaneh
Published in Journal of cellular biochemistry (01.02.2020)
Published in Journal of cellular biochemistry (01.02.2020)
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Journal Article
DUBStepR is a scalable correlation-based feature selection method for accurately clustering single-cell data
Ranjan, Bobby, Sun, Wenjie, Park, Jinyu, Mishra, Kunal, Schmidt, Florian, Xie, Ronald, Alipour, Fatemeh, Singhal, Vipul, Joanito, Ignasius, Honardoost, Mohammad Amin, Yong, Jacy Mei Yun, Koh, Ee Tzun, Leong, Khai Pang, Rayan, Nirmala Arul, Lim, Michelle Gek Liang, Prabhakar, Shyam
Published in Nature communications (06.10.2021)
Published in Nature communications (06.10.2021)
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Journal Article
Highly expressed TLX1NB and NPSR1-AS1 lncRNAs could serve as diagnostic tools in colorectal cancer
Dastjerdi, Shaghayegh, Valizadeh, Mehdi, Nemati, Rasoul, Honardoost, Mohammad Amin, Dolatabadi, Nasrin Fattahi, Zamani, Atefeh, Tabatabaeian, Hossein
Published in Human cell : official journal of Human Cell Research Society (01.11.2021)
Published in Human cell : official journal of Human Cell Research Society (01.11.2021)
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Journal Article
Lower expression of miR-218 in human breast cancer is associated with lymph node metastases, higher grades, and poorer prognosis
Ahmadinejad, Fereshteh, Mowla, Seyed Javad, Honardoost, Mohammad-Amin, Arjenaki, Mostafa Gholami, Moazeni-Bistgani, Mohammad, Kheiri, Soleyman, Teimori, Hossein
Published in Tumor biology (01.08.2017)
Published in Tumor biology (01.08.2017)
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Journal Article
scConsensus: combining supervised and unsupervised clustering for cell type identification in single-cell RNA sequencing data
Ranjan, Bobby, Schmidt, Florian, Sun, Wenjie, Park, Jinyu, Honardoost, Mohammad Amin, Tan, Joanna, Arul Rayan, Nirmala, Prabhakar, Shyam
Published in BMC bioinformatics (12.04.2021)
Published in BMC bioinformatics (12.04.2021)
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Journal Article
Deciphering the immune landscape of head and neck squamous cell carcinoma: A single-cell transcriptomic analysis of regulatory T cell responses to PD-1 blockade therapy
Miraki Feriz, Adib, Bahraini, Fatemeh, Khosrojerdi, Arezou, Azarkar, Setareh, Sajjadi, Seyed Mehdi, HosseiniGol, Edris, Honardoost, Mohammad Amin, Saghafi, Samira, Silvestris, Nicola, Leone, Patrizia, Safarpour, Hossein, Racanelli, Vito
Published in PloS one (14.12.2023)
Published in PloS one (14.12.2023)
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Journal Article
Aberrant expression of PlncRNA-1 and TUG1: potential biomarkers for gastric cancer diagnosis and clinically monitoring cancer progression
Baratieh, Zohreh, Khalaj, Zahra, Honardoost, Mohammad Amin, Emadi-Baygi, Modjtaba, Khanahmad, Hossein, Salehi, Mansoor, Nikpour, Parvaneh
Published in Biomarkers in medicine (01.12.2017)
Published in Biomarkers in medicine (01.12.2017)
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Journal Article
RCA2: a scalable supervised clustering algorithm that reduces batch effects in scRNA-seq data
Schmidt, Florian, Ranjan, Bobby, Lin, Quy Xiao Xuan, Krishnan, Vaidehi, Joanito, Ignasius, Honardoost, Mohammad Amin, Nawaz, Zahid, Venkatesh, Prasanna Nori, Tan, Joanna, Rayan, Nirmala Arul, Ong, Sin Tiong, Prabhakar, Shyam
Published in Nucleic acids research (07.09.2021)
Published in Nucleic acids research (07.09.2021)
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Journal Article
Fluctuating expression of miR-584 in primary and high-grade gastric cancer
Ebrahimi Ghahnavieh, Laleh, Tabatabaeian, Hossein, Ebrahimi Ghahnavieh, Zhaleh, Honardoost, Mohammad Amin, Azadeh, Mansoureh, Moazeni Bistgani, Mohamad, Ghaedi, Kamran
Published in BMC cancer (02.07.2020)
Published in BMC cancer (02.07.2020)
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Journal Article
Systematic immune cell dysregulation and molecular subtypes revealed by single-cell RNA-seq of subjects with type 1 diabetes
Honardoost, Mohammad Amin, Adinatha, Andreas, Schmidt, Florian, Ranjan, Bobby, Ghaeidamini, Maryam, Arul Rayan, Nirmala, Gek Liang Lim, Michelle, Joanito, Ignasius, Xiao Xuan Lin, Quy, Rajagopalan, Deepa, Qi Mok, Shi, Hwang, You Yi, Larbi, Anis, Khor, Chiea Chuen, Foo, Roger, Boehm, Bernhard Otto, Prabhakar, Shyam
Published in Genome medicine (27.03.2024)
Published in Genome medicine (27.03.2024)
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Journal Article
Tetra-Primer ARMS PCR Optimization for Detection of IVS-II-I (G-A) and FSC 8/9 InsG Mutations in β-Thalassemia Major Patients in Isfahan Population
Hajihoseini, Samaneh, Motovali-Bashi, Majid, Honardoost, Mohammad Amin, Alerasool, Nader
Published in Iranian journal of public health (01.03.2015)
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Published in Iranian journal of public health (01.03.2015)
Journal Article
miR-326 and miR-26a, two potential markers for diagnosis of relapse and remission phases in patient with relapsing–remitting multiple sclerosis
Honardoost, Mohammad Amin, Kiani-Esfahani, Abbas, Ghaedi, Kamran, Etemadifar, Masoud, Salehi, Mansoor
Published in Gene (10.07.2014)
Published in Gene (10.07.2014)
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Journal Article
Integrative computational mRNA–miRNA interaction analyses of the autoimmune-deregulated miRNAs and well-known Th17 differentiation regulators: An attempt to discover new potential miRNAs involved in Th17 differentiation
Honardoost, Mohammad Amin, Naghavian, Reza, Ahmadinejad, Fereshteh, Hosseini, Aref, Ghaedi, Kamran
Published in Gene (10.11.2015)
Published in Gene (10.11.2015)
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Journal Article
Investigation of sensitivity, specificity and accuracy of Tetra primer ARMS PCR method in comparison with conventional ARMS PCR, based on sequencing technique outcomes in IVS-II-I genotyping of beta thalassemia patients
Honardoost, Mohammad Amin, Tabatabaeian, Hosein, Akbari, Mojtaba, Salehi, Mansoor
Published in Gene (01.10.2014)
Published in Gene (01.10.2014)
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Journal Article
ESRG, LINC00518 and PWRN1 are newly-identified deregulated lncRNAs in colorectal cancer
Jafari, Nasrin, Nasiran Najafabadi, Arezo, Hamzei, Behnaz, Ataee, Nioosha, Ghasemi, Zahra, Sadeghian-Rizi, Tahereh, Honardoost, Mohammad Amin, Zamani, Atefeh, Dolatabadi, Nasrin Fattahi, Tabatabaeian, Hossein
Published in Experimental and molecular pathology (01.02.2022)
Published in Experimental and molecular pathology (01.02.2022)
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Journal Article
Integrative computational in-depth analysis of dysregulated miRNA-mRNA interactions in drug-resistant pediatric acute lymphoblastic leukemia cells: an attempt to obtain new potential gene-miRNA pathways involved in response to treatment
Mesrian Tanha, Hamzeh, Mojtabavi Naeini, Marjan, Rahgozar, Soheila, Moafi, Alireza, Honardoost, Mohammad Amin
Published in Tumor biology (01.06.2016)
Published in Tumor biology (01.06.2016)
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Journal Article
Aberrant expression of
Baratieh, Zohreh, Khalaj, Zahra, Honardoost, Mohammad Amin, Emadi-Baygi, Modjtaba, Khanahmad, Hossein, Salehi, Mansoor, Nikpour, Parvaneh
Published in Biomarkers in medicine (01.12.2017)
Published in Biomarkers in medicine (01.12.2017)
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Journal Article
Tetra-Primer ARMS PCR Optimization for Detection of IVS-II-I (G-A) and FSC 8/9 InsG Mutations in [Beta] -Thalassemia Major Pa-tients in Isfahan Population
Hajihoseini, Samaneh, Motovali-Bashi, Majid, Honardoost, Mohammad Amin, Alerasool, Nader
Published in Iranian journal of public health (01.03.2015)
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Published in Iranian journal of public health (01.03.2015)
Journal Article
scConsensus: combining supervised and unsupervised clustering for cell type identification in single-cell RNA sequencing data
Ranjan, Bobby, Schmidt, Florian, Sun, Wenjie, Park, Jinyu, Mohammad Amin Honardoost, Tan, Joanna, Nirmala Arul Rayan, Prabhakar, Shyam
Published in bioRxiv (24.04.2020)
Published in bioRxiv (24.04.2020)
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Paper
Robust clustering and interpretation of scRNA-seq data using reference component analysis
Schmidt, Florian, Ranjan, Bobby, Quy Xiao Xuan Lin, Krishnan, Vaidehi, Joanito, Ignasius, Mohammad Amin Honardoost, Nawaz, Zahid, Prasanna Nori Venkatesh, Tan, Joanna, Nirmala Arul Rayan, Ong, Stiong, Prabhakar, Shyam
Published in bioRxiv (17.02.2021)
Published in bioRxiv (17.02.2021)
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