Genotypic and Phenotypic Diversity among Human Isolates of Akkermansia muciniphila
Becken, Bradford, Davey, Lauren, Middleton, Dustin R, Mueller, Katherine D, Sharma, Agastya, Holmes, Zachary C, Dallow, Eric, Remick, Brenna, Barton, Gregory M, David, Lawrence A, McCann, Jessica R, Armstrong, Sarah C, Malkus, Per, Valdivia, Raphael H
Published in mBio (18.05.2021)
Published in mBio (18.05.2021)
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Short-Chain Fatty Acid Production by Gut Microbiota from Children with Obesity Differs According to Prebiotic Choice and Bacterial Community Composition
Holmes, Zachary C, Silverman, Justin D, Dressman, Holly K, Wei, Zhengzheng, Dallow, Eric P, Armstrong, Sarah C, Seed, Patrick C, Rawls, John F, David, Lawrence A
Published in mBio (11.08.2020)
Published in mBio (11.08.2020)
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Microbiota responses to different prebiotics are conserved within individuals and associated with habitual fiber intake
Holmes, Zachary C., Villa, Max M., Durand, Heather K., Jiang, Sharon, Dallow, Eric P., Petrone, Brianna L., Silverman, Justin D., Lin, Pao-Hwa, David, Lawrence A.
Published in Microbiome (29.07.2022)
Published in Microbiome (29.07.2022)
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Conserved anti-inflammatory effects and sensing of butyrate in zebrafish
Cholan, Pradeep Manuneedhi, Han, Alvin, Woodie, Brad R, Watchon, Maxinne, Kurz, Angela Rm, Laird, Angela S, Britton, Warwick J, Ye, Lihua, Holmes, Zachary C, McCann, Jessica R, David, Lawrence A, Rawls, John F, Oehlers, Stefan H
Published in Gut microbes (09.11.2020)
Published in Gut microbes (09.11.2020)
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Prebiotic galactooligosaccharides interact with mouse gut microbiota to attenuate acute graft-versus-host disease
Holmes, Zachary C., Tang, Helen, Liu, Congxiao, Bush, Amy, Neubert, Benjamin C., Jiao, Yiqun, Covington, Megan, Cardona, Diana M., Kirtley, Michelle C., Chen, Benny J., Chao, Nelson J., David, Lawrence A., Sung, Anthony D.
Published in Blood (24.11.2022)
Published in Blood (24.11.2022)
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Ecological memory of prior nutrient exposure in the human gut microbiome
Letourneau, Jeffrey, Holmes, Zachary C, Dallow, Eric P, Durand, Heather K, Jiang, Sharon, Carrion, Verónica M, Gupta, Savita K, Mincey, Adam C, Muehlbauer, Michael J, Bain, James R, David, Lawrence A
Published in The ISME Journal (01.11.2022)
Published in The ISME Journal (01.11.2022)
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A genetic system for Akkermansia muciniphila reveals a role for mucin foraging in gut colonization and host sterol biosynthesis gene expression
Davey, Lauren E, Malkus, Per N, Villa, Max, Dolat, Lee, Holmes, Zachary C, Letourneau, Jeff, Ansaldo, Eduard, David, Lawrence A, Barton, Gregory M, Valdivia, Raphael H
Published in Nature microbiology (01.08.2023)
Published in Nature microbiology (01.08.2023)
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Toxoplasma gondii Toc75 Functions in Import of Stromal but not Peripheral Apicoplast Proteins
Sheiner, Lilach, Fellows, Justin D., Ovciarikova, Jana, Brooks, Carrie F., Agrawal, Swati, Holmes, Zachary C., Bietz, Irine, Flinner, Nadine, Heiny, Sabrina, Mirus, Oliver, Przyborski, Jude M., Striepen, Boris
Published in Traffic (Copenhagen, Denmark) (01.12.2015)
Published in Traffic (Copenhagen, Denmark) (01.12.2015)
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Interplay between particle size and microbial ecology in the gut microbiome
Letourneau, Jeffrey, Carrion, Verónica M, Zeng, Jun, Jiang, Sharon, Osborne, Olivia W, Holmes, Zachary C, Fox, Aiden, Epstein, Piper, Tan, Chin Yee, Kirtley, Michelle, Surana, Neeraj K, David, Lawrence A
Published in The ISME Journal (30.08.2024)
Published in The ISME Journal (30.08.2024)
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Journal Article
Interplay between particle size and microbial ecology in the gut microbiome
Letourneau, Jeffrey, Carrion, Verónica M, Jiang, Sharon, Osborne, Olivia W, Holmes, Zachary C, Fox, Aiden, Epstein, Piper, Tan, Chin Yee, Kirtley, Michelle, Surana, Neeraj K, David, Lawrence A
Published in bioRxiv (27.04.2024)
Published in bioRxiv (27.04.2024)
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Bayesian Multinomial Logistic Normal Models through Marginally Latent Matrix-T Processes
Silverman, Justin D, Roche, Kimberly, Holmes, Zachary C, David, Lawrence A, Mukherjee, Sayan
Published in arXiv.org (01.04.2019)
Published in arXiv.org (01.04.2019)
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Journal Article
Microbiota responses to different prebiotics are conserved within individuals and associated with habitual fiber intake
Holmes, Zachary C, Villa, Max M, Durand, Heather K, Jiang, Sharon, Dallow, Eric P, Petrone, Brianna L, Silverman, Justin D, Pao-Hwa Lin, David, Lawrence A
Published in bioRxiv (27.06.2021)
Published in bioRxiv (27.06.2021)
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Paper
Short-chain fatty acid production by gut microbiota from children with obesity is linked to bacterial community composition and prebiotic choice
Holmes, Zachary C, Silverman, Justin D, Dressman, Holly K, Wei, Zhengzheng, Dallow, Eric P, Armstrong, Sarah C, Seed, Patrick C, Rawls, John F, David, Lawrence A
Published in bioRxiv (12.04.2020)
Published in bioRxiv (12.04.2020)
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Paper
Conserved anti-inflammatory effects and sensing of butyrate in zebrafish
Cholan, Pradeep Manuneedhi, Han, Alvin, Woodie, Brad R, Watchon, Maxinne, Kurz, Angela RM, Laird, Angela S, Britton, Warwick J, Ye, Lihua, Holmes, Zachary C, McCann, Jessica R, David, Lawrence A, Rawls, John F, Oehlers, Stefan H
Published in Gut Microbes (09.11.2020)
Published in Gut Microbes (09.11.2020)
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Conserved anti-inflammatory effects and sensing of butyrate in zebrafish
Cholan, Pradeep Manuneedhi, Han, Alvin, Woodie, Brad R, Kurz, Angela Rm, Britton, Warwick J, Ye, Lihua, Holmes, Zachary C, Mccann, Jessica R, David, Lawrence A, Rawls, John F, Oehlers, Stefan H
Published in bioRxiv (15.05.2020)
Published in bioRxiv (15.05.2020)
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Paper