Incorporating the speciation process into species delimitation
Sukumaran, Jeet, Holder, Mark T, Knowles, L Lacey
Published in PLoS computational biology (01.05.2021)
Published in PLoS computational biology (01.05.2021)
Get full text
Journal Article
BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics
Ayres, Daniel L, Darling, Aaron, Zwickl, Derrick J, Beerli, Peter, Holder, Mark T, Lewis, Paul O, Huelsenbeck, John P, Ronquist, Fredrik, Swofford, David L, Cummings, Michael P, Rambaut, Andrew, Suchard, Marc A
Published in Systematic biology (01.01.2012)
Published in Systematic biology (01.01.2012)
Get full text
Journal Article
NeXML: Rich, Extensible, and Verifiable Representation of Comparative Data and Metadata
Vos, Rutger A., Balhoff, James P., Caravas, Jason A., Holder, Mark T., Lapp, Hilmar, Maddison, Wayne P., Midford, Peter E., Priyam, Anurag, Sukumaran, Jeet, Xia, Xuhua, Stoltzfus, Arlin
Published in Systematic biology (01.07.2012)
Published in Systematic biology (01.07.2012)
Get full text
Journal Article
Evaluating the robustness of phylogenetic methods to among-site variability in substitution processes
Holder, Mark T, Zwickl, Derrick J, Dessimoz, Christophe
Published in Philosophical transactions of the Royal Society of London. Series B. Biological sciences (27.12.2008)
Published in Philosophical transactions of the Royal Society of London. Series B. Biological sciences (27.12.2008)
Get full text
Journal Article
OpenTree: A Python Package for Accessing and Analyzing Data from the Open Tree of Life
Mctavish, Emily Jane, Sánchez-Reyes, Luna Luisa, Holder, Mark T
Published in Systematic biology (13.10.2021)
Published in Systematic biology (13.10.2021)
Get full text
Journal Article
A Dirichlet Process Prior for Estimating Lineage-Specific Substitution Rates
Heath, Tracy A., Holder, Mark T., Huelsenbeck, John P.
Published in Molecular biology and evolution (01.03.2012)
Published in Molecular biology and evolution (01.03.2012)
Get full text
Journal Article
EVIDENCE FOR CLIMATE-DRIVEN DIVERSIFICATION? A CAUTION FOR INTERPRETING ABC INFERENCES OF SIMULTANEOUS HISTORICAL EVENTS
Oaks, Jamie R., Sukumaran, Jeet, Esselstyn, Jacob A., Linkem, Charles W., Siler, Cameron D., Holder, Mark T., Brown, Rafe M.
Published in Evolution (01.04.2013)
Published in Evolution (01.04.2013)
Get full text
Journal Article
The interface of protein structure, protein biophysics, and molecular evolution
Liberles, David A., Teichmann, Sarah A., Bahar, Ivet, Bastolla, Ugo, Bloom, Jesse, Bornberg‐Bauer, Erich, Colwell, Lucy J., de Koning, A. P. Jason, Dokholyan, Nikolay V., Echave, Julian, Elofsson, Arne, Gerloff, Dietlind L., Goldstein, Richard A., Grahnen, Johan A., Holder, Mark T., Lakner, Clemens, Lartillot, Nicholas, Lovell, Simon C., Naylor, Gavin, Perica, Tina, Pollock, David D., Pupko, Tal, Regan, Lynne, Roger, Andrew, Rubinstein, Nimrod, Shakhnovich, Eugene, Sjölander, Kimmen, Sunyaev, Shamil, Teufel, Ashley I., Thorne, Jeffrey L., Thornton, Joseph W., Weinreich, Daniel M., Whelan, Simon
Published in Protein science (01.06.2012)
Published in Protein science (01.06.2012)
Get full text
Journal Article
Polytomies and Bayesian Phylogenetic Inference
Lewis, Paul O., Holder, Mark T., Holsinger, Kent E., Buckley, Thomas
Published in Systematic biology (01.04.2005)
Published in Systematic biology (01.04.2005)
Get full text
Journal Article
Genome‐wide genotyping estimates mating system parameters and paternity in the island species Tolpis succulenta
Gibson, Matthew J. S., Crawford, Daniel J., Holder, Mark T., Mort, Mark E., Kerbs, Benjamin, Sequeira, Miguel Menezes, Kelly, John K.
Published in American journal of botany (01.08.2020)
Published in American journal of botany (01.08.2020)
Get full text
Journal Article
Two Living Species of Coelacanths?
Holder, Mark T., Erdmann, Mark V., Wilcox, Thomas P., Caldwell, Roy L., Hillis, David M.
Published in Proceedings of the National Academy of Sciences - PNAS (26.10.1999)
Published in Proceedings of the National Academy of Sciences - PNAS (26.10.1999)
Get full text
Journal Article