Learning supervised embeddings for large scale sequence comparisons
Kimothi, Dhananjay, Biyani, Pravesh, Hogan, James M, Soni, Akshay, Kelly, Wayne
Published in PloS one (13.03.2020)
Published in PloS one (13.03.2020)
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Journal Article
Metagenomic Geolocation Using Read Signatures
Chappell, Timothy, Geva, Shlomo, Hogan, James M, Lovell, David, Trotman, Andrew, Perrin, Dimitri
Published in Frontiers in genetics (28.02.2022)
Published in Frontiers in genetics (28.02.2022)
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Journal Article
Rapid analysis of metagenomic data using signature-based clustering
Chappell, Timothy, Geva, Shlomo, Hogan, James M, Huygens, Flavia, Rathnayake, Irani U, Rudd, Stephen, Kelly, Wayne, Perrin, Dimitri
Published in BMC bioinformatics (21.12.2018)
Published in BMC bioinformatics (21.12.2018)
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Journal Article
Collaborative Sense-Making in Genomic Research: The Role of Visualisation
Rittenbruch, Markus, Vella, Kellie, Brereton, Margot, Hogan, James M., Johnson, Daniel, Heinrich, Julian, O'Donoghue, Sean
Published in IEEE transactions on visualization and computer graphics (01.12.2022)
Published in IEEE transactions on visualization and computer graphics (01.12.2022)
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Journal Article
Inferring phylogenies of evolving sequences without multiple sequence alignment
Chan, Cheong Xin, Bernard, Guillaume, Poirion, Olivier, Hogan, James M., Ragan, Mark A.
Published in Scientific reports (30.09.2014)
Published in Scientific reports (30.09.2014)
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Journal Article
Visualization of Biomedical Data
O'Donoghue, Seán I, Baldi, Benedetta Frida, Clark, Susan J, Darling, Aaron E, Hogan, James M, Kaur, Sandeep, Maier-Hein, Lena, McCarthy, Davis J, Moore, William J, Stenau, Esther, Swedlow, Jason R, Vuong, Jenny, Procter, James B
Published in Annual review of biomedical data science (20.07.2018)
Published in Annual review of biomedical data science (20.07.2018)
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Journal Article
Accelerating Binary String Comparisons with a Scalable, Streaming-Based System Architecture Based on FPGAs
Pilz, Sarah, Porrmann, Florian, Kaiser, Martin, Hagemeyer, Jens, Hogan, James M., Rückert, Ulrich
Published in Algorithms (01.02.2020)
Published in Algorithms (01.02.2020)
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Journal Article
THE IN SILICO PREDICTION OF PROMOTERS IN BACTERIAL GENOMES
TOWSEY, MICHAEL, HOGAN, JAMES M., MATHEWS, SARAH, TIMMS, PETER
Published in Genome Informatics (2007)
Published in Genome Informatics (2007)
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Journal Article
Large Scale Comparative Visualisation of Regulatory Networks with TRNDiff
Chua, Xin-Yi, Buckingham, Lawrence, Hogan, James M., Novichkov, Pavel
Published in Procedia computer science (01.01.2015)
Published in Procedia computer science (01.01.2015)
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Journal Article
Biomashups: the new world of exploratory bioinformatics?
Hogan, James M., Sumitomo, Jiro, Roe, Paul, Newell, Felicity
Published in Concurrency and computation (10.08.2011)
Published in Concurrency and computation (10.08.2011)
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Journal Article
Farnesyl pyrophosphate synthase enantiospecificity with a chiral risedronate analog, [6,7-dihydro-5 H-cyclopenta[ c]pyridin-7-yl(hydroxy)methylene]bis(phosphonic acid) (NE-10501): Synthetic, structural, and modeling studies
Deprèle, Sylvine, Kashemirov, Boris A., Hogan, James M., Ebetino, Frank H., Barnett, Bobby L., Evdokimov, Artem, McKenna, Charles E.
Published in Bioorganic & medicinal chemistry letters (01.05.2008)
Published in Bioorganic & medicinal chemistry letters (01.05.2008)
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Journal Article
The prediction of bacterial transcription start sites using SVMs
Towsey, Michael W, Gordon, James J, Hogan, James M
Published in International journal of neural systems (01.10.2006)
Published in International journal of neural systems (01.10.2006)
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Journal Article
Learning supervised embeddings for large scale sequence comparisons
Kimothi, Dhananjay, Biyani, Pravesh, Hogan, James M, Soni, Akshay, Kelly, Wayne
Published in bioRxiv (26.04.2019)
Published in bioRxiv (26.04.2019)
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Paper
Predicting Fault-Prone Software Modules with Rank Sum Classification
Cahill, Jaspar, Hogan, James M., Thomas, Richard
Published in 2013 22nd Australian Software Engineering Conference (01.06.2013)
Published in 2013 22nd Australian Software Engineering Conference (01.06.2013)
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Conference Proceeding