PASTEC: an automatic transposable element classification tool
Hoede, Claire, Arnoux, Sandie, Moisset, Mark, Chaumier, Timothée, Inizan, Olivier, Jamilloux, Véronique, Quesneville, Hadi
Published in PloS one (02.05.2014)
Published in PloS one (02.05.2014)
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Intracellular Salmonella Paratyphi A is motile and differs in the expression of flagella-chemotaxis, SPI-1 and carbon utilization pathways in comparison to intracellular S. Typhimurium
Cohen, Helit, Hoede, Claire, Scharte, Felix, Coluzzi, Charles, Cohen, Emiliano, Shomer, Inna, Mallet, Ludovic, Holbert, Sébastien, Serre, Remy Felix, Schiex, Thomas, Virlogeux-Payant, Isabelle, Grassl, Guntram A, Hensel, Michael, Chiapello, Hélène, Gal-Mor, Ohad
Published in PLoS pathogens (05.04.2022)
Published in PLoS pathogens (05.04.2022)
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Animal and human pathogenic Escherichia coli strains share common genetic backgrounds
Clermont, Olivier, Olier, Maiwenn, Hoede, Claire, Diancourt, Laure, Brisse, Sylvain, Keroudean, Monique, Glodt, Jérémy, Picard, Bertrand, Oswald, Eric, Denamur, Erick
Published in Infection, genetics and evolution (01.04.2011)
Published in Infection, genetics and evolution (01.04.2011)
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Development of an in vitro biofilm model for the study of the impact of fluoroquinolones on sewer biofilm microbiota
Naudin, Sarah A, Ferran, Aude A, Imazaki, Pedro Henrique, Arpaillange, Nathalie, Marcuzzo, Camille, Vienne, Maïna, Demmou, Sofia, Bousquet-Mélou, Alain, Ramon-Portugal, Felipe, Lacroix, Marlene Z, Hoede, Claire, Barret, Maialen, Dupouy, Véronique, Bibbal, Delphine
Published in Frontiers in microbiology (27.03.2024)
Published in Frontiers in microbiology (27.03.2024)
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Daily transcriptomes of the copepod Calanus finmarchicus during the summer solstice at high Arctic latitudes
Payton, Laura, Noirot, Céline, Hoede, Claire, Hüppe, Lukas, Last, Kim, Wilcockson, David, Ershova, Elizaveta A., Valière, Sophie, Meyer, Bettina
Published in Scientific data (24.11.2020)
Published in Scientific data (24.11.2020)
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Unraveling the evolution and coevolution of small regulatory RNAs and coding genes in Listeria
Cerutti, Franck, Mallet, Ludovic, Painset, Anaïs, Hoede, Claire, Moisan, Annick, Bécavin, Christophe, Duval, Mélodie, Dussurget, Olivier, Cossart, Pascale, Gaspin, Christine, Chiapello, Hélène
Published in BMC genomics (16.11.2017)
Published in BMC genomics (16.11.2017)
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Remodeling of the cycling transcriptome of the oyster Crassostrea gigas by the harmful algae Alexandrium minutum
Payton, Laura, Perrigault, Mickael, Hoede, Claire, Massabuau, Jean-Charles, Sow, Mohamedou, Huvet, Arnaud, Boullot, Floriane, Fabioux, Caroline, Hegaret, Hélène, Tran, Damien
Published in Scientific reports (14.06.2017)
Published in Scientific reports (14.06.2017)
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Phylodynamic study of the conserved RNA structure encompassing the hemagglutinin cleavage site encoding region of H5 and H7 low pathogenic avian influenza viruses
Dupré, Gabriel, Hoede, Claire, Figueroa, Thomas, Bessière, Pierre, Bertagnoli, Stéphane, Ducatez, Mariette, Gaspin, Christine, Volmer, Romain
Published in Virus evolution (01.11.2021)
Published in Virus evolution (01.11.2021)
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Journal Article
Contribution of Recombination to the Evolution of Human Immunodeficiency Viruses Expressing Resistance to Antiretroviral Treatment
NORA, Tamara, CHARPENTIER, Charlotte, TENAILLON, Olivier, HOEDE, Claire, CLAVEL, Frangois, HANCE, Allan J
Published in Journal of Virology (01.07.2007)
Published in Journal of Virology (01.07.2007)
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Journal Article
Listeriomics: an Interactive Web Platform for Systems Biology of Listeria
Bécavin, Christophe, Koutero, Mikael, Tchitchek, Nicolas, Cerutti, Franck, Lechat, Pierre, Maillet, Nicolas, Hoede, Claire, Chiapello, Hélène, Gaspin, Christine, Cossart, Pascale
Published in mSystems (01.03.2017)
Published in mSystems (01.03.2017)
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Journal Article
RNAbrowse: RNA-Seq de novo assembly results browser
Mariette, Jérôme, Noirot, Céline, Nabihoudine, Ibounyamine, Bardou, Philippe, Hoede, Claire, Djari, Anis, Cabau, Cédric, Klopp, Christophe
Published in PloS one (13.05.2014)
Published in PloS one (13.05.2014)
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Journal Article
Widely rhythmic transcriptome in Calanus finmarchicus during the high Arctic summer solstice period
Payton, Laura, Hüppe, Lukas, Noirot, Céline, Hoede, Claire, Last, Kim S., Wilcockson, David, Ershova, Elizaveta, Valière, Sophie, Meyer, Bettina
Published in iScience (22.01.2021)
Published in iScience (22.01.2021)
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A Module Located at a Chromosomal Integration Hot Spot Is Responsible for the Multidrug Resistance of a Reference Strain from Escherichia coli Clonal Group A
LESCAT, Mathilde, CALTEAU, Alexandra, HOEDE, Claire, BARBE, Valérie, TOUCHON, Marie, ROCHA, Eduardo, TENAILLON, Olivier, MEDIGUE, Claudine, JOHNSON, James R, DENAMUR, Erick
Published in Antimicrobial Agents and Chemotherapy (01.06.2009)
Published in Antimicrobial Agents and Chemotherapy (01.06.2009)
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Journal Article
aes, the gene encoding the esterase B in Escherichia coli, is a powerful phylogenetic marker of the species
Lescat, Mathilde, Hoede, Claire, Clermont, Olivier, Garry, Louis, Darlu, Pierre, Tuffery, Pierre, Denamur, Erick, Picard, Bertrand
Published in BMC microbiology (29.12.2009)
Published in BMC microbiology (29.12.2009)
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Impact of environmental micropollutants and diet composition on the gut microbiota of wild european eels (Anguilla anguilla)
Bertucci, Anthony, Hoede, Claire, Dassié, Emilie, Gourves, Pierre-Yves, Suin, Amandine, Le Menach, Karine, Budzinski, Hélène, Daverat, Françoise
Published in Environmental pollution (1987) (01.12.2022)
Published in Environmental pollution (1987) (01.12.2022)
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The BioMart community portal: an innovative alternative to large, centralized data repositories
Smedley, Damian, Haider, Syed, Durinck, Steffen, Pandini, Luca, Provero, Paolo, Allen, James, Arnaiz, Olivier, Awedh, Mohammad Hamza, Baldock, Richard, Barbiera, Giulia, Bardou, Philippe, Beck, Tim, Blake, Andrew, Bonierbale, Merideth, Brookes, Anthony J, Bucci, Gabriele, Buetti, Iwan, Burge, Sarah, Cabau, Cédric, Carlson, Joseph W, Chelala, Claude, Chrysostomou, Charalambos, Cittaro, Davide, Collin, Olivier, Cordova, Raul, Cutts, Rosalind J, Dassi, Erik, Di Genova, Alex, Djari, Anis, Esposito, Anthony, Estrella, Heather, Eyras, Eduardo, Fernandez-Banet, Julio, Forbes, Simon, Free, Robert C, Fujisawa, Takatomo, Gadaleta, Emanuela, Garcia-Manteiga, Jose M, Goodstein, David, Gray, Kristian, Guerra-Assunção, José Afonso, Haggarty, Bernard, Han, Dong-Jin, Han, Byung Woo, Harris, Todd, Harshbarger, Jayson, Hastings, Robert K, Hayes, Richard D, Hoede, Claire, Hu, Shen, Hu, Zhi-Liang, Hutchins, Lucie, Kan, Zhengyan, Kawaji, Hideya, Keliet, Aminah, Kerhornou, Arnaud, Kim, Sunghoon, Kinsella, Rhoda, Klopp, Christophe, Kong, Lei, Lawson, Daniel, Lazarevic, Dejan, Lee, Ji-Hyun, Letellier, Thomas, Li, Chuan-Yun, Lio, Pietro, Liu, Chu-Jun, Luo, Jie, Maass, Alejandro, Mariette, Jerome, Maurel, Thomas, Merella, Stefania, Mohamed, Azza Mostafa, Moreews, Francois, Nabihoudine, Ibounyamine, Ndegwa, Nelson, Noirot, Céline, Perez-Llamas, Cristian, Primig, Michael, Quattrone, Alessandro, Quesneville, Hadi, Rambaldi, Davide, Reecy, James, Riba, Michela, Rosanoff, Steven, Saddiq, Amna Ali, Salas, Elisa, Sallou, Olivier, Shepherd, Rebecca, Simon, Reinhard, Sperling, Linda, Spooner, William, Staines, Daniel M, Steinbach, Delphine, Stone, Kevin, Stupka, Elia, Teague, Jon W, Dayem Ullah, Abu Z, Wang, Jun, Ware, Doreen
Published in Nucleic acids research (01.07.2015)
Published in Nucleic acids research (01.07.2015)
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Links between Transcription, Environmental Adaptation and Gene Variability in Escherichia coli: Correlations between Gene Expression and Gene Variability Reflect Growth Efficiencies
Feugeas, Jean-Paul, Tourret, Jerome, Launay, Adrien, Bouvet, Odile, Hoede, Claire, Denamur, Erick, Tenaillon, Olivier
Published in Molecular biology and evolution (01.10.2016)
Published in Molecular biology and evolution (01.10.2016)
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Journal Article
Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism
Spanu, Pietro D, Abbott, James C, Amselem, Joelle, Burgis, Timothy A, Soanes, Darren M, Stüber, Kurt, Loren van Themaat, Emiel Ver, Brown, James K.M, Butcher, Sarah A, Gurr, Sarah J, Lebrun, Marc-Henri, Ridout, Christopher J, Schulze-Lefert, Paul, Talbot, Nicholas J, Ahmadinejad, Nahal, Ametz, Christian, Barton, Geraint R, Benjdia, Mariam, Bidzinski, Przemyslaw, Bindschedler, Laurence V, Both, Maike, Brewer, Marin T, Cadle-Davidson, Lance, Cadle-Davidson, Molly M, Collemare, Jerome, Cramer, Rainer, Frenkel, Omer, Godfrey, Dale, Harriman, James, Hoede, Claire, King, Brian C, Klages, Sven, Kleemann, Jochen, Knoll, Daniela, Koti, Prasanna S, Kreplak, Jonathan, López-Ruiz, Francisco J, Lu, Xunli, Maekawa, Takaki, Mahanil, Siraprapa, Micali, Cristina, Milgroom, Michael G, Montana, Giovanni, Noir, Sandra, O'Connell, Richard J, Oberhaensli, Simone, Parlange, Francis, Pedersen, Carsten, Quesneville, Hadi, Reinhardt, Richard, Rott, Matthias, Sacristán, Soledad, Schmidt, Sarah M, Schön, Moritz, Skamnioti, Pari, Sommer, Hans, Stephens, Amber, Takahara, Hiroyuki, Thordal-Christensen, Hans, Vigouroux, Marielle, Wessling, Ralf, Wicker, Thomas, Panstruga, Ralph
Published in Science (American Association for the Advancement of Science) (10.12.2010)
Published in Science (American Association for the Advancement of Science) (10.12.2010)
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