Genetic Variants of SARS-CoV-2—What Do They Mean?
Lauring, Adam S, Hodcroft, Emma B
Published in JAMA : the journal of the American Medical Association (09.02.2021)
Published in JAMA : the journal of the American Medical Association (09.02.2021)
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Potential impact of seasonal forcing on a SARS-CoV-2 pandemic
Neher, Richard A, Dyrdak, Robert, Druelle, Valentin, Hodcroft, Emma B, Albert, Jan
Published in Swiss medical weekly (16.03.2020)
Published in Swiss medical weekly (16.03.2020)
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The Evolution and Biology of SARS-CoV-2 Variants
Telenti, Amalio, Hodcroft, Emma B, Robertson, David L
Published in Cold Spring Harbor perspectives in biology (01.05.2022)
Published in Cold Spring Harbor perspectives in biology (01.05.2022)
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Public health actions to control new SARS-CoV-2 variants
Grubaugh, Nathan D., Hodcroft, Emma B., Fauver, Joseph R., Phelan, Alexandra L., Cevik, Muge
Published in Cell (04.03.2021)
Published in Cell (04.03.2021)
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Transmission of SARS-CoV-2 in domestic cats imposes a narrow bottleneck
Braun, Katarina M, Moreno, Gage K, Halfmann, Peter J, Hodcroft, Emma B, Baker, David A, Boehm, Emma C, Weiler, Andrea M, Haj, Amelia K, Hatta, Masato, Chiba, Shiho, Maemura, Tadashi, Kawaoka, Yoshihiro, Koelle, Katia, O'Connor, David H, Friedrich, Thomas C
Published in PLoS pathogens (01.02.2021)
Published in PLoS pathogens (01.02.2021)
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COVID-19 epidemic in Switzerland: on the importance of testing, contact tracing and isolation
Salathé, Marcel, Althaus, Christian L, Neher, Richard, Stringhini, Silvia, Hodcroft, Emma, Fellay, Jacques, Zwahlen, Marcel, Senti, Gabriela, Battegay, Manuel, Wilder-Smith, Annelies, Eckerle, Isabella, Egger, Matthias, Low, Nicola
Published in Swiss medical weekly (19.03.2020)
Published in Swiss medical weekly (19.03.2020)
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Scientific consensus on the COVID-19 pandemic: we need to act now
Alwan, Nisreen A, Burgess, Rochelle Ann, Ashworth, Simon, Beale, Rupert, Bhadelia, Nahid, Bogaert, Debby, Dowd, Jennifer, Eckerle, Isabella, Goldman, Lynn R, Greenhalgh, Trisha, Gurdasani, Deepti, Hamdy, Adam, Hanage, William P, Hodcroft, Emma B, Hyde, Zoë, Kellam, Paul, Kelly-Irving, Michelle, Krammer, Florian, Lipsitch, Marc, McNally, Alan, McKee, Martin, Nouri, Ali, Pimenta, Dominic, Priesemann, Viola, Rutter, Harry, Silver, Joshua, Sridhar, Devi, Swanton, Charles, Walensky, Rochelle P, Yamey, Gavin, Ziauddeen, Hisham
Published in The Lancet (31.10.2020)
Published in The Lancet (31.10.2020)
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Want to track pandemic variants faster? Fix the bioinformatics bottleneck
Hodcroft, Emma B., De Maio, Nicola, Lanfear, Rob, MacCannell, Duncan R., Minh, Bui Quang, Schmidt, Heiko A., Stamatakis, Alexandros, Goldman, Nick, Dessimoz, Christophe
Published in Nature (London) (04.03.2021)
Published in Nature (London) (04.03.2021)
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Evolution, geographic spreading, and demographic distribution of Enterovirus D68
Hodcroft, Emma B, Dyrdak, Robert, Andrés, Cristina, Egli, Adrian, Reist, Josiane, García Martínez de Artola, Diego, Alcoba-Flórez, Julia, Niesters, Hubert G M, Antón, Andrés, Poelman, Randy, Reynders, Marijke, Wollants, Elke, Neher, Richard A, Albert, Jan
Published in PLoS pathogens (31.05.2022)
Published in PLoS pathogens (31.05.2022)
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Cryptic transmission of SARS-CoV-2 in Washington state
Bedford, Trevor, Greninger, Alexander L, Roychoudhury, Pavitra, Starita, Lea M, Famulare, Michael, Huang, Meei-Li, Nalla, Arun, Pepper, Gregory, Reinhardt, Adam, Xie, Hong, Shrestha, Lasata, Nguyen, Truong N, Adler, Amanda, Brandstetter, Elisabeth, Cho, Shari, Giroux, Danielle, Han, Peter D, Fay, Kairsten, Frazar, Chris D, Ilcisin, Misja, Lacombe, Kirsten, Lee, Jover, Kiavand, Anahita, Richardson, Matthew, Sibley, Thomas R, Truong, Melissa, Wolf, Caitlin R, Nickerson, Deborah A, Rieder, Mark J, Englund, Janet A, Hadfield, James, Hodcroft, Emma B, Huddleston, John, Moncla, Louise H, Müller, Nicola F, Neher, Richard A, Deng, Xianding, Gu, Wei, Federman, Scot, Chiu, Charles, Duchin, Jeffrey S, Gautom, Romesh, Melly, Geoff, Hiatt, Brian, Dykema, Philip, Lindquist, Scott, Queen, Krista, Tao, Ying, Uehara, Anna, Tong, Suxiang, MacCannell, Duncan, Armstrong, Gregory L, Baird, Geoffrey S, Chu, Helen Y, Shendure, Jay, Jerome, Keith R
Published in Science (30.10.2020)
Published in Science (30.10.2020)
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Co-circulation of multiple enterovirus D68 subclades, including a novel B3 cluster, across Europe in a season of expected low prevalence, 2019/20
Midgley, Sofie Elisabeth, Benschop, Kimberley, Dyrdak, Robert, Mirand, Audrey, Bailly, Jean-Luc, Bierbaum, Sibylle, Buderus, Stefan, Böttcher, Sindy, Eis-Hübinger, Anna-Maria, Hönemann, Mario, Jensen, Veronika Vorobieva, Hartling, Ulla Birgitte, Henquell, Cécile, Panning, Marcus, Thomsen, Marianne Kragh, Hodcroft, Emma B, Meijer, Adam
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (16.01.2020)
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (16.01.2020)
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Interactions between seasonal human coronaviruses and implications for the SARS-CoV-2 pandemic: A retrospective study in Stockholm, Sweden, 2009-2020
Dyrdak, Robert, Hodcroft, Emma B., Wahlund, Martina, Neher, Richard A., Albert, Jan
Published in Journal of clinical virology (01.03.2021)
Published in Journal of clinical virology (01.03.2021)
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Emergence of an early SARS-CoV-2 epidemic in the United States
Zeller, Mark, Gangavarapu, Karthik, Anderson, Catelyn, Smither, Allison R., Vanchiere, John A., Rose, Rebecca, Snyder, Daniel J., Dudas, Gytis, Watts, Alexander, Matteson, Nathaniel L., Robles-Sikisaka, Refugio, Marshall, Maximilian, Feehan, Amy K., Sabino-Santos, Gilberto, Bell-Kareem, Antoinette R., Hughes, Laura D., Alkuzweny, Manar, Snarski, Patricia, Garcia-Diaz, Julia, Scott, Rona S., Melnik, Lilia I., Klitting, Raphaëlle, McGraw, Michelle, Belda-Ferre, Pedro, DeHoff, Peter, Sathe, Shashank, Marotz, Clarisse, Grubaugh, Nathan D., Nolan, David J., Drouin, Arnaud C., Genemaras, Kaylynn J., Chao, Karissa, Topol, Sarah, Spencer, Emily, Nicholson, Laura, Aigner, Stefan, Yeo, Gene W., Farnaes, Lauge, Hobbs, Charlotte A., Laurent, Louise C., Knight, Rob, Hodcroft, Emma B., Khan, Kamran, Fusco, Dahlene N., Cooper, Vaughn S., Lemey, Phillipe, Gardner, Lauren, Lamers, Susanna L., Kamil, Jeremy P., Garry, Robert F., Suchard, Marc A., Andersen, Kristian G.
Published in Cell (16.09.2021)
Published in Cell (16.09.2021)
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Functional SARS-CoV-2 cross-reactive CD4 + T cells established in early childhood decline with age
Humbert, Marion, Olofsson, Anna, Wullimann, David, Niessl, Julia, Hodcroft, Emma B, Cai, Curtis, Gao, Yu, Sohlberg, Ebba, Dyrdak, Robert, Mikaeloff, Flora, Neogi, Ujjwal, Albert, Jan, Malmberg, Karl-Johan, Lund-Johansen, Fridtjof, Aleman, Soo, Björkhem-Bergman, Linda, Jenmalm, Maria C, Ljunggren, Hans-Gustaf, Buggert, Marcus, Karlsson, Annika C
Published in Proceedings of the National Academy of Sciences - PNAS (21.03.2023)
Published in Proceedings of the National Academy of Sciences - PNAS (21.03.2023)
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Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison
Ratmann, Oliver, Hodcroft, Emma B, Pickles, Michael, Cori, Anne, Hall, Matthew, Lycett, Samantha, Colijn, Caroline, Dearlove, Bethany, Didelot, Xavier, Frost, Simon, Hossain, A S Md Mukarram, Joy, Jeffrey B, Kendall, Michelle, Kühnert, Denise, Leventhal, Gabriel E, Liang, Richard, Plazzotta, Giacomo, Poon, Art F Y, Rasmussen, David A, Stadler, Tanja, Volz, Erik, Weis, Caroline, Leigh Brown, Andrew J, Fraser, Christophe
Published in Molecular biology and evolution (01.01.2017)
Published in Molecular biology and evolution (01.01.2017)
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Identifying Transmission Clusters with Cluster Picker and HIV-TRACE
Rose, Rebecca, Lamers, Susanna L, Dollar, James J, Grabowski, Mary K, Hodcroft, Emma B, Ragonnet-Cronin, Manon, Wertheim, Joel O, Redd, Andrew D, German, Danielle, Laeyendecker, Oliver
Published in AIDS research and human retroviruses (01.03.2017)
Published in AIDS research and human retroviruses (01.03.2017)
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Transmission of Non-B HIV Subtypes in the United Kingdom Is Increasingly Driven by Large Non-Heterosexual Transmission Clusters
Ragonnet-Cronin, Manon, Lycett, Samantha J., Hodcroft, Emma B., Hué, Stéphane, Fearnhill, Esther, Brown, Alison E., Delpech, Valerie, Dunn, David, Brown, Andrew J. Leigh
Published in The Journal of infectious diseases (01.05.2016)
Published in The Journal of infectious diseases (01.05.2016)
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