Integrating cultivation and metagenomics for a multi-kingdom view of skin microbiome diversity and functions
Saheb Kashaf, Sara, Proctor, Diana M, Deming, Clay, Saary, Paul, Hölzer, Martin, Taylor, Monica E, Kong, Heidi H, Segre, Julia A, Almeida, Alexandre, Finn, Robert D
Published in Nature microbiology (01.01.2022)
Published in Nature microbiology (01.01.2022)
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A subset of SMN complex members have a specific role in tissue regeneration via ERBB pathway-mediated proliferation
Pei, Wuhong, Xu, Lisha, Chen, Zelin, Slevin, Claire C, Pettie, Kade P, Wincovitch, Stephen, Burgess, Shawn M
Published in npj Regenerative medicine (2020)
Published in npj Regenerative medicine (2020)
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Topographic diversity of fungal and bacterial communities in human skin
Findley, Keisha, Oh, Julia, Yang, Joy, Conlan, Sean, Deming, Clayton, Meyer, Jennifer A, Schoenfeld, Deborah, Nomicos, Effie, Park, Morgan, Kong, Heidi H, Segre, Julia A
Published in Nature (London) (20.06.2013)
Published in Nature (London) (20.06.2013)
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Expanded skin virome in DOCK8-deficient patients
Tirosh, Osnat, Conlan, Sean, Deming, Clay, Lee-Lin, Shih-Queen, Huang, Xin, Su, Helen C, Freeman, Alexandra F, Segre, Julia A, Kong, Heidi H
Published in Nature medicine (01.12.2018)
Published in Nature medicine (01.12.2018)
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Genetic effects on liver chromatin accessibility identify disease regulatory variants
Currin, Kevin W., Erdos, Michael R., Narisu, Narisu, Rai, Vivek, Vadlamudi, Swarooparani, Perrin, Hannah J., Idol, Jacqueline R., Yan, Tingfen, Albanus, Ricardo D’Oliveira, Broadaway, K. Alaine, Etheridge, Amy S., Bonnycastle, Lori L., Orchard, Peter, Didion, John P., Chaudhry, Amarjit S., Barnabas, Beatrice B., Black, Sean, Bouffard, Gerard G., Brooks, Shelise Y., Coleman, Holly, Dekhtyar, Lyudmila, Han, Joel, Ho, Shi-ling, Kim, Juyun, Legaspi, Richelle, Maduro, Quino L., Masiello, Catherine A., McDowell, Jennifer C., Montemayor, Casandra, Mullikin, James C., Park, Morgan, Riebow, Nancy L., Schandler, Karen, Schmidt, Brian, Sison, Christina, Stantripop, Sirintorn, Thomas, James W., Thomas, Pamela J., Vemulapalli, Meghana, Young, Alice C., Innocenti, Federico, Schuetz, Erin G., Scott, Laura J., Parker, Stephen C.J., Collins, Francis S., Mohlke, Karen L.
Published in American journal of human genetics (01.07.2021)
Published in American journal of human genetics (01.07.2021)
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A genome catalog of the early-life human skin microbiome
Shen, Zeyang, Robert, Lukian, Stolpman, Milan, Che, You, Allen, Katrina J, Saffery, Richard, Walsh, Audrey, Young, Angela, Eckert, Jana, Deming, Clay, Chen, Qiong, Conlan, Sean, Laky, Karen, Li, Jenny Min, Chatman, Lindsay, Kashaf, Sara Saheb, Kong, Heidi H, Frischmeyer-Guerrerio, Pamela A, Perrett, Kirsten P, Segre, Julia A
Published in Genome Biology (10.11.2023)
Published in Genome Biology (10.11.2023)
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Effort required to finish shotgun-generated genome sequences differs significantly among vertebrates
Blakesley, Robert W, Hansen, Nancy F, Gupta, Jyoti, McDowell, Jennifer C, Maskeri, Baishali, Barnabas, Beatrice B, Brooks, Shelise Y, Coleman, Holly, Haghighi, Payam, Ho, Shi-Ling, Schandler, Karen, Stantripop, Sirintorn, Vogt, Jennifer L, Thomas, Pamela J, Bouffard, Gerard G, Green, Eric D
Published in BMC genomics (11.01.2010)
Published in BMC genomics (11.01.2010)
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Evaluation of Recipients of Positive and Negative Secondary Findings Evaluations in a Hybrid CLIA-Research Sequencing Pilot
Sapp, Julie C., Johnston, Jennifer J., Driscoll, Kate, Heidlebaugh, Alexis R., Miren Sagardia, Ane, Dogbe, D. Nadine, Umstead, Kendall L., Turbitt, Erin, Alevizos, Ilias, Baron, Jeffrey, Bönnemann, Carsten, Brooks, Brian, Donkervoort, Sandra, Jee, Youn Hee, Linehan, W. Marston, McMahon, Francis J., Moss, Joel, Mullikin, James C., Nielsen, Deborah, Pelayo, Eileen, Remaley, Alan T., Siegel, Richard, Su, Helen, Zarate, Carlos, Barnabas, Beatrice B., Bouffard, Gerard G., Brooks, Shelise Y., Coleman, Holly, Dekhtyar, Lyudmila, Guan, Xiaobin, Han, Joel, Ho, Shi-ling, Legaspi, Richelle, Maduro, Quino L., Masiello, Catherine A., McDowell, Jennifer C., Montemayor, Casandra, Park, Morgan, Riebow, Nancy L., Schandler, Karen, Scharer, Chanthra, Schmidt, Brian, Sison, Christina, Stantripop, Sirintorn, Thomas, James W., Thomas, Pamela J., Vemulapalli, Meghana, Young, Alice C., Manolio, Teri A., Biesecker, Barbara B., Biesecker, Leslie G.
Published in American journal of human genetics (06.09.2018)
Published in American journal of human genetics (06.09.2018)
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DNA methylation in mice is influenced by genetics as well as sex and life experience
Grimm, Sara A, Shimbo, Takashi, Takaku, Motoki, Thomas, James W, Auerbach, Scott, Bennett, Brian D, Bucher, John R, Burkholder, Adam B, Day, Frank, Du, Ying, Duncan, Christopher G, French, John E, Foley, Julie F, Li, Jianying, Merrick, B Alex, Tice, Raymond R, Wang, Tianyuan, Xu, Xiaojiang, Bushel, Pierre R, Fargo, David C, Mullikin, James C, Wade, Paul A
Published in Nature communications (18.01.2019)
Published in Nature communications (18.01.2019)
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Genome-wide recombination drives diversification of epidemic strains of Acinetobacter baumannii
Snitkin, Evan S., Zelazny, Adrian M., Montero, Clemente I., Stock, Frida, Mijares, Lilia, Murray, Patrick R., Segre, Julie A.
Published in Proceedings of the National Academy of Sciences - PNAS (16.08.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (16.08.2011)
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Dosage compensation and DNA methylation landscape of the X chromosome in mouse liver
Duncan, Christopher G, Grimm, Sara A, Morgan, Daniel L, Bushel, Pierre R, Bennett, Brian D, Roberts, John D, Tyson, Frederick L, Merrick, B Alex, Wade, Paul A
Published in Scientific reports (04.07.2018)
Published in Scientific reports (04.07.2018)
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Hypoxia‐induced HIF1α targets in melanocytes reveal a molecular profile associated with poor melanoma prognosis
Loftus, Stacie K., Baxter, Laura L., Cronin, Julia C., Fufa, Temesgen D., Pavan, William J., Barnabas, Beatrice B., Bouffard, Gerard G., Brooks, Shelise Y., Coleman, Holly, Dekhtyar, Lyudmila, Guan, Xiaobin, Han, Joel, Ho, Shi‐ling, Legaspi, Richelle, Maduro, Quino L., Masiello, Catherine A., McDowell, Jennifer C., Montemayor, Casandra, Mullikin, James C., Park, Morgan, Riebow, Nancy L., Rosarda, Jessica, Schandler, Karen, Schmidt, Brian, Sison, Christina, Smith, Raymond, Stantripop, Sirintorn, Thomas, James W., Thomas, Pamela J., Vemulapalli, Meghana, Young, Alice C.
Published in Pigment cell and melanoma research (01.05.2017)
Published in Pigment cell and melanoma research (01.05.2017)
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Expanded microbiome niches of RAG-deficient patients
Blaustein, Ryan A., Shen, Zeyang, Kashaf, Sara Saheb, Lee-Lin, ShihQueen, Conlan, Sean, Thomas, Jim, Mullikin, James, Young, Alice, Bouffard, Gerry, Barnabas, Betty, Brooks, Shelise, Buchter, Chloe, Crawford, Juyun, Han, Joel, Ho, Shi-ling, Legaspi, Richelle, Maduro, Quino, Marfani, Holly, Montemayor, Casandra, Schandler, Karen, Schmidt, Brian, Sison, Christina, Stantripop, Mal, Black, Sean, Dekhtyar, Mila, Masiello, Cathy, McDowell, Jenny, Park, Morgan, Thomas, Pam, Vemulapalli, Meg, Bosticardo, Marita, Delmonte, Ottavia M., Holmes, Cassandra J., Taylor, Monica E., Banania, Glenna, Nagao, Keisuke, Dimitrova, Dimana, Kanakry, Jennifer A., Su, Helen, Holland, Steven M., Bergerson, Jenna R.E., Freeman, Alexandra F., Notarangelo, Luigi D., Kong, Heidi H., Segre, Julia A.
Published in Cell reports. Medicine (17.10.2023)
Published in Cell reports. Medicine (17.10.2023)
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An intermediate grade of finished genomic sequence suitable for comparative analyses
Blakesley, Robert W, Hansen, Nancy F, Mullikin, James C, Thomas, Pamela J, McDowell, Jennifer C, Maskeri, Baishali, Young, Alice C, Benjamin, Beatrice, Brooks, Shelise Y, Coleman, Bradley I, Gupta, Jyoti, Ho, Shi-Ling, Karlins, Eric M, Maduro, Quino L, Stantripop, Sirintorn, Tsurgeon, Cyrus, Vogt, Jennifer L, Walker, Michelle A, Masiello, Catherine A, Guan, Xiaobin, Bouffard, Gerard G, Green, Eric D
Published in Genome research (01.11.2004)
Published in Genome research (01.11.2004)
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Biogeography and individuality shape function in the human skin metagenome
Oh, Julia, Byrd, Allyson L, Deming, Clay, Conlan, Sean, Kong, Heidi H, Segre, Julia A
Published in Nature (London) (02.10.2014)
Published in Nature (London) (02.10.2014)
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Temporal shifts in the skin microbiome associated with disease flares and treatment in children with atopic dermatitis
Kong, Heidi H, Oh, Julia, Deming, Clay, Conlan, Sean, Grice, Elizabeth A, Beatson, Melony A, Nomicos, Effie, Polley, Eric C, Komarow, Hirsh D, Murray, Patrick R, Turner, Maria L, Segre, Julia A
Published in Genome research (01.05.2012)
Published in Genome research (01.05.2012)
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Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants
Parker, Stephen C. J., Stitzel, Michael L., Taylor, D. Leland, Orozco, Jose Miguel, Erdos, Michael R., Akiyama, Jennifer A., van Bueren, Kelly Lammerts, Chines, Peter S., Narisu, Narisu, Black, Brian L., Visel, Axel, Pennacchio, Len A., Collins, Francis S.
Published in Proceedings of the National Academy of Sciences - PNAS (29.10.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (29.10.2013)
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Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus
Liao, Hua-Xin, Lynch, Rebecca, Zhou, Tongqing, Gao, Feng, Alam, S Munir, Boyd, Scott D, Fire, Andrew Z, Roskin, Krishna M, Schramm, Chaim A, Zhang, Zhenhai, Zhu, Jiang, Shapiro, Lawrence, Mullikin, James C, Gnanakaran, S, Hraber, Peter, Wiehe, Kevin, Kelsoe, Garnett, Yang, Guang, Xia, Shi-Mao, Montefiori, David C, Parks, Robert, Lloyd, Krissey E, Scearce, Richard M, Soderberg, Kelly A, Cohen, Myron, Kamanga, Gift, Louder, Mark K, Tran, Lillian M, Chen, Yue, Cai, Fangping, Chen, Sheri, Moquin, Stephanie, Du, Xiulian, Joyce, M Gordon, Srivatsan, Sanjay, Zhang, Baoshan, Zheng, Anqi, Shaw, George M, Hahn, Beatrice H, Kepler, Thomas B, Korber, Bette T M, Kwong, Peter D, Mascola, John R, Haynes, Barton F
Published in Nature (London) (25.04.2013)
Published in Nature (London) (25.04.2013)
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Genetic regulatory signatures underlying islet gene expression and type 2 diabetes
Varshney, Arushi, Scott, Laura J., Welch, Ryan P., Erdos, Michael R., Chines, Peter S., Narisu, Narisu, Albanus, Ricardo D’O., Orchard, Peter, Wolford, Brooke N., Kursawe, Romy, Vadlamudi, Swarooparani, Cannon, Maren E., Didion, John P., Hensley, John, Kirilusha, Anthony, Bonnycastle, Lori L., Taylor, D. Leland, Watanabe, Richard, Mohlke, Karen L., Boehnke, Michael, Collins, Francis S., Parker, Stephen C. J., Stitzel, Michael L.
Published in Proceedings of the National Academy of Sciences - PNAS (28.02.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (28.02.2017)
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