Efficient and accurate detection of viral sequences at single-cell resolution reveals putative novel viruses perturbing host gene expression
Luebbert, Laura, Sullivan, Delaney K, Carilli, Maria, Hjörleifsson, Kristján Eldjárn, Winnett, Alexander Viloria, Chari, Tara, Pachter, Lior
Published in bioRxiv (04.05.2024)
Published in bioRxiv (04.05.2024)
Get full text
Journal Article
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
Melsted, Páll, Booeshaghi, A. Sina, Liu, Lauren, Gao, Fan, Lu, Lambda, Min, Kyung Hoi (Joseph), da Veiga Beltrame, Eduardo, Hjörleifsson, Kristján Eldjárn, Gehring, Jase, Pachter, Lior
Published in Nature biotechnology (01.07.2021)
Published in Nature biotechnology (01.07.2021)
Get full text
Journal Article
kallisto, bustools, and kb-python for quantifying bulk, single-cell, and single-nucleus RNA-seq
Sullivan, Delaney K, Min, Kyung Hoi Joseph, Hjörleifsson, Kristján Eldjárn, Luebbert, Laura, Holley, Guillaume, Moses, Lambda, Gustafsson, Johan, Bray, Nicolas L, Pimentel, Harold, Booeshaghi, A Sina, Melsted, Páll, Pachter, Lior
Published in bioRxiv (23.01.2024)
Published in bioRxiv (23.01.2024)
Get full text
Journal Article
Paper
kallisto, bustools and kb-python for quantifying bulk, single-cell and single-nucleus RNA-seq
Sullivan, Delaney K, Min, Kyung Hoi Joseph, Hjörleifsson, Kristján Eldjárn, Luebbert, Laura, Holley, Guillaume, Moses, Lambda, Gustafsson, Johan, Bray, Nicolas L, Pimentel, Harold, Booeshaghi, A Sina, Melsted, Páll, Pachter, Lior
Published in Nature protocols (10.10.2024)
Published in Nature protocols (10.10.2024)
Get full text
Journal Article
Active Annotation Translation
Branson, Steve, Hjorleifsson, Kristjan Eldjarn, Perona, Pietro
Published in 2014 IEEE Conference on Computer Vision and Pattern Recognition (01.06.2014)
Published in 2014 IEEE Conference on Computer Vision and Pattern Recognition (01.06.2014)
Get full text
Conference Proceeding
Efficient and accurate detection of viral sequences at single-cell resolution reveals novel viruses perturbing host gene expression
Luebbert, Laura, Sullivan, Delaney K, Carilli, Maria, Hjorleifsson, Kristjan Eldjarn, Alexander Viloria Winnett, Chari, Tara, Pachter, Lior
Published in bioRxiv (12.12.2023)
Published in bioRxiv (12.12.2023)
Get full text
Paper