MS2Rescore: Data-Driven Rescoring Dramatically Boosts Immunopeptide Identification Rates
Declercq, Arthur, Bouwmeester, Robbin, Hirschler, Aurélie, Carapito, Christine, Degroeve, Sven, Martens, Lennart, Gabriels, Ralf
Published in Molecular & cellular proteomics (01.08.2022)
Published in Molecular & cellular proteomics (01.08.2022)
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Thunder-DDA-PASEF enables high-coverage immunopeptidomics and is boosted by MS2Rescore with MS2PIP timsTOF fragmentation prediction model
Gomez-Zepeda, David, Arnold-Schild, Danielle, Beyrle, Julian, Declercq, Arthur, Gabriels, Ralf, Kumm, Elena, Preikschat, Annica, Łącki, Mateusz Krzysztof, Hirschler, Aurélie, Rijal, Jeewan Babu, Carapito, Christine, Martens, Lennart, Distler, Ute, Schild, Hansjörg, Tenzer, Stefan
Published in Nature communications (13.03.2024)
Published in Nature communications (13.03.2024)
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NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation
Castro, Carla Noemi, Rosenzwajg, Michelle, Carapito, Raphael, Shahrooei, Mohammad, Konantz, Martina, Khan, Amjad, Miao, Zhichao, Groß, Miriam, Tranchant, Thibaud, Radosavljevic, Mirjana, Paul, Nicodème, Stemmelen, Tristan, Pitoiset, Fabien, Hirschler, Aurélie, Nespola, Benoit, Molitor, Anne, Rolli, Véronique, Pichot, Angélique, Faletti, Laura Eva, Rinaldi, Bruno, Friant, Sylvie, Mednikov, Mark, Karauzum, Hatice, Aman, M Javad, Carapito, Christine, Lengerke, Claudia, Ziaee, Vahid, Eyaid, Wafaa, Ehl, Stephan, Alroqi, Fayhan, Parvaneh, Nima, Bahram, Seiamak
Published in The Journal of experimental medicine (07.12.2020)
Published in The Journal of experimental medicine (07.12.2020)
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Tracing troubles: Unveiling the hidden impact of inorganic contamination on juvenile green sea turtle
Beauvieux, Anaïs, Bourjea, Jérôme, Fromentin, Jean-Marc, Jean, Claire, Ciccione, Stéphane, Ballorain, Katia, Romero, Diego, Dbouk, Zahraa, Hirschler, Aurélie, Bertile, Fabrice, Schull, Quentin
Published in Marine pollution bulletin (01.11.2024)
Published in Marine pollution bulletin (01.11.2024)
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Mechanistic insights into sulfur source-driven physiological responses and metabolic reorganization in the fuel-biodesulfurizing Rhodococcus qingshengii IGTS8
Zumsteg, Julie, Hirschler, Aurélie, Carapito, Christine, Maurer, Loïc, Villette, Claire, Heintz, Dimitri, Dahl, Christiane, El Nayal, Ashraf, Sangal, Vartul, Mahmoud, Huda, Van Dorsselaer, Alain, Ismail, Wael
Published in Applied and environmental microbiology (28.09.2023)
Published in Applied and environmental microbiology (28.09.2023)
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Zika virus enhances monocyte adhesion and transmigration favoring viral dissemination to neural cells
Ayala-Nunez, Nilda Vanesa, Follain, Gautier, Delalande, François, Hirschler, Aurélie, Partiot, Emma, Hale, Gillian L., Bollweg, Brigid C., Roels, Judith, Chazal, Maxime, Bakoa, Florian, Carocci, Margot, Bourdoulous, Sandrine, Faklaris, Orestis, Zaki, Sherif R., Eckly, Anita, Uring-Lambert, Béatrice, Doussau, Frédéric, Cianferani, Sarah, Carapito, Christine, Jacobs, Frank M. J., Jouvenet, Nolwenn, Goetz, Jacky G., Gaudin, Raphael
Published in Nature communications (27.09.2019)
Published in Nature communications (27.09.2019)
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Astrogliosis and neuroinflammation underlie scoliosis upon cilia dysfunction
Djebar, Morgane, Anselme, Isabelle, Pezeron, Guillaume, Bardet, Pierre-Luc, Cantaut-Belarif, Yasmine, Eschstruth, Alexis, López-Santos, Diego, Le Ribeuz, Hélène, Jenett, Arnim, Khoury, Hanane, Veziers, Joelle, Parmentier, Caroline, Hirschler, Aurélie, Carapito, Christine, Bachmann-Gagescu, Ruxandra, Schneider-Maunoury, Sylvie, Vesque, Christine
Published in eLife (10.10.2024)
Published in eLife (10.10.2024)
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Biodesulfurization Induces Reprogramming of Sulfur Metabolism in Rhodococcus qingshengii IGTS8: Proteomics and Untargeted Metabolomics
Hirschler, Aurélie, Carapito, Christine, Maurer, Loïc, Zumsteg, Julie, Villette, Claire, Heintz, Dimitri, Dahl, Christiane, Al-Nayal, Ashraf, Sangal, Vartul, Mahmoud, Huda, Van Dorsselaer, Alain, Ismail, Wael
Published in Microbiology spectrum (31.10.2021)
Published in Microbiology spectrum (31.10.2021)
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Tenascin-C Orchestrates an Immune-Suppressive Tumor Microenvironment in Oral Squamous Cell Carcinoma
Spenlé, Caroline, Loustau, Thomas, Murdamoothoo, Devadarssen, Erne, William, Beghelli-de la Forest Divonne, Stephanie, Veber, Romain, Petti, Luciana, Bourdely, Pierre, Mörgelin, Matthias, Brauchle, Eva-Maria, Cremel, Gérard, Randrianarisoa, Vony, Camara, Abdouramane, Rekima, Samah, Schaub, Sebastian, Nouhen, Kelly, Imhof, Thomas, Hansen, Uwe, Paul, Nicodème, Carapito, Raphael, Pythoud, Nicolas, Hirschler, Aurélie, Carapito, Christine, Dumortier, Hélène, Mueller, Christopher G, Koch, Manuel, Schenke-Layland, Katja, Kon, Shigeyuki, Sudaka, Anne, Anjuère, Fabienne, Van Obberghen-Schilling, Ellen, Orend, Gertraud
Published in Cancer immunology research (01.09.2020)
Published in Cancer immunology research (01.09.2020)
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ProMetIS, deep phenotyping of mouse models by combined proteomics and metabolomics analysis
Imbert, Alyssa, Rompais, Magali, Selloum, Mohammed, Castelli, Florence, Mouton-Barbosa, Emmanuelle, Brandolini-Bunlon, Marion, Chu-Van, Emeline, Joly, Charlotte, Hirschler, Aurélie, Roger, Pierrick, Burger, Thomas, Leblanc, Sophie, Sorg, Tania, Ouzia, Sadia, Vandenbrouck, Yves, Médigue, Claudine, Junot, Christophe, Ferro, Myriam, Pujos-Guillot, Estelle, de Peredo, Anne Gonzalez, Fenaille, François, Carapito, Christine, Herault, Yann, Thévenot, Etienne A.
Published in Scientific data (03.12.2021)
Published in Scientific data (03.12.2021)
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Brain exposure to SARS-CoV-2 virions perturbs synaptic homeostasis
Partiot, Emma, Hirschler, Aurélie, Colomb, Sophie, Lutz, Willy, Claeys, Tine, Delalande, François, Deffieu, Maika S., Bare, Yonis, Roels, Judith R. E., Gorda, Barbara, Bons, Joanna, Callon, Domitille, Andreoletti, Laurent, Labrousse, Marc, Jacobs, Frank M. J., Rigau, Valérie, Charlot, Benoit, Martens, Lennart, Carapito, Christine, Ganesh, Gowrishankar, Gaudin, Raphael
Published in Nature microbiology (01.05.2024)
Published in Nature microbiology (01.05.2024)
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Rab7-harboring vesicles are carriers of the transferrin receptor through the biosynthetic secretory pathway
Deffieu, Maika S, Cesonyte, Ieva, Delalande, François, Boncompain, Gaelle, Dorobantu, Cristina, Song, Eli, Lucansky, Vincent, Hirschler, Aurélie, Cianferani, Sarah, Perez, Franck, Carapito, Christine, Gaudin, Raphael
Published in Science advances (08.01.2021)
Published in Science advances (08.01.2021)
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Updated MS²PIP web server supports cutting-edge proteomics applications
Declercq, Arthur, Bouwmeester, Robbin, Chiva, Cristina, Sabidó, Eduard, Hirschler, Aurélie, Carapito, Christine, Martens, Lennart, Degroeve, Sven, Gabriels, Ralf
Published in Nucleic acids research (05.07.2023)
Published in Nucleic acids research (05.07.2023)
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Identification of driver genes for critical forms of COVID-19 in a deeply phenotyped young patient cohort
Carapito, Raphael, Li, Richard, Helms, Julie, Carapito, Christine, Gujja, Sharvari, Rolli, Véronique, Guimaraes, Raony, Malagon-Lopez, Jose, Spinnhirny, Perrine, Lederle, Alexandre, Mohseninia, Razieh, Hirschler, Aurélie, Muller, Leslie, Bastard, Paul, Gervais, Adrian, Zhang, Qian, Danion, François, Ruch, Yvon, Schenck, Maleka, Collange, Olivier, Chamaraux-Tran, Thiên-Nga, Molitor, Anne, Pichot, Angélique, Bernard, Alice, Tahar, Ouria, Bibi-Triki, Sabrina, Wu, Haiguo, Paul, Nicodème, Mayeur, Sylvain, Larnicol, Annabel, Laumond, Géraldine, Frappier, Julia, Schmidt, Sylvie, Hanauer, Antoine, Macquin, Cécile, Stemmelen, Tristan, Simons, Michael, Mariette, Xavier, Hermine, Olivier, Fafi-Kremer, Samira, Goichot, Bernard, Drenou, Bernard, Kuteifan, Khaldoun, Pottecher, Julien, Mertes, Paul-Michel, Kailasan, Shweta, Aman, M Javad, Pin, Elisa, Nilsson, Peter, Thomas, Anne, Viari, Alain, Sanlaville, Damien, Schneider, Francis, Sibilia, Jean, Tharaux, Pierre-Louis, Casanova, Jean-Laurent, Hansmann, Yves, Lidar, Daniel, Radosavljevic, Mirjana, Gulcher, Jeffrey R, Meziani, Ferhat, Moog, Christiane, Chittenden, Thomas W, Bahram, Seiamak
Published in Science translational medicine (19.01.2022)
Published in Science translational medicine (19.01.2022)
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Astrogliosis and neuroinflammation underlie scoliosis upon cilia dysfunction
Djebar, Morgane, Anselme, Isabelle, Pezeron, Guillaume, Bardet, Pierre-Luc, Cantaut-Belarif, Yasmine, Eschstruth, Alexis, López-Santos, Diego, Le Ribeuz, Hélène, Jenett, Arnim, Khoury, Hanane, Veziers, Joelle, Parmentier, Caroline, Hirschler, Aurélie, Carapito, Christine, Bachmann-Gagescu, Ruxandra, Schneider-Maunoury, Sylvie, Vesque, Christine
Published in eLife (10.10.2024)
Published in eLife (10.10.2024)
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Journal Article
NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation and hyperinflammation Running title: NCKAP1L deficiency
Castro, Carla Noemi, Rosenzwajg, Michelle, Carapito, Raphael, Shahrooei, Mohammad, Konantz, Martina, Khan, Amjad, Miao, Zhichao, Gross, Miriam, Tranchant, Thibaud, Radosavljevic, Mirjana, Paul, Nicodème, Stemmelen, Tristan, Pitoiset, Fabien, Hirschler, Aurélie, Nespola, Benoit, Molitor, Anne, Rolli, Véronique, Pichot, Angélique, Faletti, Laura Eva, Rinaldi, Bruno, Friant, Sylvie, Mednikov, Mark, Karauzum, Hatice, Javad Aman, M, Carapito, Christine, Lengerke, Claudia, Ziaee, Vahid, Eyaid, Wafaa, Ehl, Stephan, Alroqi, Fayhan, Parvaneh, Nima, Bahram, Seiamak
Published in The Journal of experimental medicine (21.07.2020)
Published in The Journal of experimental medicine (21.07.2020)
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Thunder-DDA-PASEF enables high-coverage immunopeptidomics and is boosted by MS 2 Rescore with MS 2 PIP timsTOF fragmentation prediction model
Gomez-Zepeda, David, Arnold-Schild, Danielle, Beyrle, Julian, Declercq, Arthur, Gabriels, Ralf, Kumm, Elena, Preikschat, Annica, Łącki, Mateusz Krzysztof, Hirschler, Aurélie, Rijal, Jeewan Babu, Carapito, Christine, Martens, Lennart, Distler, Ute, Schild, Hansjörg, Tenzer, Stefan
Published in Nature communications (13.03.2024)
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Published in Nature communications (13.03.2024)
Journal Article
Zika virus enhances monocyte adhesion and transmigration favoring viral dissemination to neural cells
Ayala-Nunez, Nilda Vanesa, Follain, Gautier, Delalande, François, Hirschler, Aurélie, Partiot, Emma, Hale, Gillian L, Bollweg, Brigid C, Roels, Judith, Chazal, Maxime, Bakoa, Florian, Carocci, Margot, Bourdoulous, Sandrine, Faklaris, Orestis, Zaki, Sherif R, Eckly, Anita, Uring-Lambert, Béatrice, Doussau, Frédéric, Cianferani, Sarah, Carapito, Christine, Jacobs, Frank M J, Jouvenet, Nolwenn, Goetz, Jacky G, Gaudin, Raphael
Published in Nature communications (27.09.2019)
Published in Nature communications (27.09.2019)
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