Classification of alkaloids according to the starting substances of their biosynthetic pathways using graph convolutional neural networks
Eguchi, Ryohei, Ono, Naoaki, Hirai Morita, Aki, Katsuragi, Tetsuo, Nakamura, Satoshi, Huang, Ming, Altaf-Ul-Amin, Md, Kanaya, Shigehiko
Published in BMC bioinformatics (09.07.2019)
Published in BMC bioinformatics (09.07.2019)
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Journal Article
Classification of metabolites by metabolic pathways concerning terpenoids, phenylpropanoids, and polyketide compounds based on machine learning
Koide, Yuri, Koge, Daiki, Kanaya, Shigehiko, Altaf-Ul-Amin, Md, Huang, Ming, Morita, Aki Hirai, Ono, Naoaki
Published in Journal of Computer Aided Chemistry (2023)
Published in Journal of Computer Aided Chemistry (2023)
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Journal Article
Clustering of 3D-Structure Similarity Based Network of Secondary Metabolites Reveals Their Relationships with Biological Activities
Ohtana, Yuki, Abdullah, Azian Azamimi, Altaf-Ul-Amin, Md, Huang, Ming, Ono, Naoaki, Sato, Tetsuo, Sugiura, Tadao, Horai, Hisayuki, Nakamura, Yukiko, Morita (Hirai), Aki, Lange, Klaus W., Kibinge, Nelson K., Katsuragi, Tetsuo, Shirai, Tsuyoshi, Kanaya, Shigehiko
Published in Molecular informatics (01.12.2014)
Published in Molecular informatics (01.12.2014)
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Journal Article
KNApSAcK Family Databases: Integrated Metabolite-Plant Species Databases for Multifaceted Plant Research
Afendi, Farit Mochamad, Okada, Taketo, Yamazaki, Mami, Hirai-Morita, Aki, Nakamura, Yukiko, Nakamura, Kensuke, Ikeda, Shun, Takahashi, Hiroki, Altaf-Ul-Amin, Md, Darusman, Latifah K., Saito, Kazuki, Kanaya, Shigehiko
Published in Plant and cell physiology (01.02.2012)
Published in Plant and cell physiology (01.02.2012)
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Journal Article
[Dedicated to Prof. T. Okada and Prof. T. Nishioka: data science in chemistry]Classification of Alkaloid Compounds Based on Subring Skeleton (SRS) Profiling: On Finding Relationship of Compounds with Metabolic Pathways
Eguchi, Ryohei, Ono, Naoaki, Horai, Hisayuki, Amin, Md.Altuf-Ul, Hirai, Aki Morita, Kawahara, Jun, Kasahara, Shoji, Endo, Tomoaki, Kanaya, Shigehiko
Published in Journal of Computer Aided Chemistry (2017)
Published in Journal of Computer Aided Chemistry (2017)
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Journal Article
Utilization of KNApSAcK Family Databases for Developing Herbal Medicine Systems
Wijaya, Sony Hartono, Tanaka, Yuki, Altaf-Ul-Amin, Md, Morita, Aki Hirai, Afendi, Farit Mochamad, Batubara, Irmanida, Ono, Naoaki, Darusman, Latifah K., Kanaya, Shigehiko
Published in Journal of Computer Aided Chemistry (2016)
Published in Journal of Computer Aided Chemistry (2016)
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Journal Article
KNApSAcK Metabolite Activity Database for retrieving the relationships between metabolites and biological activities
Nakamura, Yukiko, Afendi, Farit Mochamad, Parvin, Aziza Kawsar, Ono, Naoaki, Tanaka, Ken, Hirai Morita, Aki, Sato, Tetsuo, Sugiura, Tadao, Altaf-Ul-Amin, Md, Kanaya, Shigehiko
Published in Plant and cell physiology (01.01.2014)
Published in Plant and cell physiology (01.01.2014)
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Journal Article
KNApSAcK-3D: a three-dimensional structure database of plant metabolites
Nakamura, Kensuke, Shimura, Naoki, Otabe, Yuuki, Hirai-Morita, Aki, Nakamura, Yukiko, Ono, Naoaki, Ul-Amin, Md Altaf, Kanaya, Shigehiko
Published in Plant and cell physiology (01.02.2013)
Published in Plant and cell physiology (01.02.2013)
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Journal Article
Cutting Edge Data Science towards Understanding of Crude Drug, Food and Ecosystem Based on Metabolomics
HIRAI-MORITA, Aki, NAKAMURA, Yukiko, HUANG, Ming, SATO, Tetsuo, ONO, Naoaki, NISHIOKA, Takaaki, SHIRAI, Tsuyoshi, KANAYA, Shigehiko
Published in KAGAKU TO SEIBUTSU (20.08.2015)
Published in KAGAKU TO SEIBUTSU (20.08.2015)
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Journal Article
Development and Mining of a Volatile Organic Compound Database
Kanaya, Shigehiko, Nishioka, Takaaki, Katsuragi, Tetsuo, Morita, Aki Hirai, Sugiura, Tadao, Sato, Tetsuo, Ono, Naoaki, Altaf-Ul-Amin, Md, Abdullah, Azian Azamimi, Muto, Ai
Published in BioMed research international (01.01.2015)
Published in BioMed research international (01.01.2015)
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Journal Article
Systematization of the protein sequence diversity in enzymes related to secondary metabolic pathways in plants, in the context of big data biology inspired by the KNApSAcK motorcycle database
Ikeda, Shun, Abe, Takashi, Nakamura, Yukiko, Kibinge, Nelson, Hirai Morita, Aki, Nakatani, Atsushi, Ono, Naoaki, Ikemura, Toshimichi, Nakamura, Kensuke, Altaf-Ul-Amin, Md, Kanaya, Shigehiko
Published in Plant and cell physiology (01.05.2013)
Published in Plant and cell physiology (01.05.2013)
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Journal Article
Data Mining Methods for Omics and Knowledge of Crude Medicinal Plants toward Big Data Biology
Afendi, Farit M, Ono, Naoaki, Nakamura, Yukiko, Nakamura, Kensuke, Darusman, Latifah K, Kibinge, Nelson, Morita, Aki Hirai, Tanaka, Ken, Horai, Hisayuki, Altaf-Ul-Amin, Md, Kanaya, Shigehiko
Published in Computational and structural biotechnology journal (01.01.2013)
Published in Computational and structural biotechnology journal (01.01.2013)
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Journal Article
Predicting and considering properties of general polymers using incomplete dataset
Yamano, Hitoshi, Shimizu, Hiroaki, Kanaya, Shigehiko, Miyao, Tomoyuki, Hirai, Aki Morita, Ono, Naoaki
Published in 2020 International Symposium on Semiconductor Manufacturing (ISSM) (15.12.2020)
Published in 2020 International Symposium on Semiconductor Manufacturing (ISSM) (15.12.2020)
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Conference Proceeding
Cutting Edge Data Science towards Understanding of Crude Drug, Food and Ecosystem Based on Metabolomics: 医食同源と生態学の体系化に向けて
HIRAI-MORITA, Aki, NAKAMURA, Yukiko, HUANG, Ming, SATO, Tetsuo, ONO, Naoaki, NISHIOKA, Takaaki, SHIRAI, Tsuyoshi, KANAYA, Shigehiko
Published in Kagaku To Seibutsu (2015)
Published in Kagaku To Seibutsu (2015)
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Journal Article
Data Mining Methods for Omics and Knowledge of Crude Medicinal Plants toward Big Data Biology
Farit M. Afendi, Naoaki Ono, Latifah K. Darusman, Kensuke Nakamura, Yukiko Nakamura, Nelson Kibinge, Aki Hirai Morita, Hisayuki Horai, Md. Altaf-Ul-Amin, Shigehiko Kanaya, Ken Tanaka
Published in Computational and structural biotechnology journal (01.01.2013)
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Published in Computational and structural biotechnology journal (01.01.2013)
Journal Article
Data Intensive Study of Accessibility of Edible Species and Healthcare Across the Globe
WATANABE, Satoshi, KYO, Hoko, Liu, KANG, EGUCHI, Ryohei, Altaf-Ul-Amin, Md, MORITA(Hirai), Aki, OHASHI, Minako, ONO, Naoaki, HUANG, Alex Ming, ZHU, Yanbo, WANG, Qi, DAI, Zhaoyu, NAKAMURA, Yukiko, LANGE, Klaus W., UEBABA, Kazuo, HASHIMOTO, Shintaro, KANAYA, Shigehiko, SUZUKI, Nobutaka
Published in Japanese Journal of Complementary and Alternative Medicine (31.03.2018)
Published in Japanese Journal of Complementary and Alternative Medicine (31.03.2018)
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Journal Article