Ultrafast Sample placement on Existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic
Turakhia, Yatish, Thornlow, Bryan, Hinrichs, Angie S., De Maio, Nicola, Gozashti, Landen, Lanfear, Robert, Haussler, David, Corbett-Detig, Russell
Published in Nature genetics (01.06.2021)
Published in Nature genetics (01.06.2021)
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Journal Article
The UCSC Genome Browser database: 2021 update
Navarro Gonzalez, Jairo, Zweig, Ann S, Speir, Matthew L, Schmelter, Daniel, Rosenbloom, Kate R, Raney, Brian J, Powell, Conner C, Nassar, Luis R, Maulding, Nathan D, Lee, Christopher M, Lee, Brian T, Hinrichs, Angie S, Fyfe, Alastair C, Fernandes, Jason D, Diekhans, Mark, Clawson, Hiram, Casper, Jonathan, Benet-Pagès, Anna, Barber, Galt P, Haussler, David, Kuhn, Robert M, Haeussler, Maximilian, Kent, W James
Published in Nucleic Acids Research (08.01.2021)
Published in Nucleic Acids Research (08.01.2021)
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Web Resource
The UCSC Genome Browser database: 2023 update
Nassar, Luis R, Barber, Galt P, Benet-Pagès, Anna, Casper, Jonathan, Clawson, Hiram, Diekhans, Mark, Fischer, Clay, Gonzalez, Jairo Navarro, Hinrichs, Angie S, Lee, Brian T, Lee, Christopher M, Muthuraman, Pranav, Nguy, Beagan, Pereira, Tiana, Nejad, Parisa, Perez, Gerardo, Raney, Brian J, Schmelter, Daniel, Speir, Matthew L, Wick, Brittney D, Zweig, Ann S, Haussler, David, Kuhn, Robert M, Haeussler, Maximilian, Kent, W James
Published in Nucleic acids research (06.01.2023)
Published in Nucleic acids research (06.01.2023)
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Journal Article
The UCSC Genome Browser database: 2022 update
Lee, Brian T, Barber, Galt P, Benet-Pagès, Anna, Casper, Jonathan, Clawson, Hiram, Diekhans, Mark, Fischer, Clay, Gonzalez, Jairo Navarro, Hinrichs, Angie S, Lee, Christopher M, Muthuraman, Pranav, Nassar, Luis R, Nguy, Beagan, Pereira, Tiana, Perez, Gerardo, Raney, Brian J, Rosenbloom, Kate R, Schmelter, Daniel, Speir, Matthew L, Wick, Brittney D, Zweig, Ann S, Haussler, David, Kuhn, Robert M, Haeussler, Maximilian, Kent, W James
Published in Nucleic acids research (07.01.2022)
Published in Nucleic acids research (07.01.2022)
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Journal Article
BigWig and BigBed: enabling browsing of large distributed datasets
Kent, W. J., Zweig, A. S., Barber, G., Hinrichs, A. S., Karolchik, D.
Published in Bioinformatics (01.09.2010)
Published in Bioinformatics (01.09.2010)
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Journal Article
The UCSC Genome Browser database: 2018 update
Casper, Jonathan, Zweig, Ann S, Villarreal, Chris, Tyner, Cath, Speir, Matthew L, Rosenbloom, Kate R, Raney, Brian J, Lee, Christopher M, Lee, Brian T, Karolchik, Donna, Hinrichs, Angie S, Haeussler, Maximilian, Guruvadoo, Luvina, Navarro Gonzalez, Jairo, Gibson, David, Fiddes, Ian T, Eisenhart, Christopher, Diekhans, Mark, Clawson, Hiram, Barber, Galt P, Armstrong, Joel, Haussler, David, Kuhn, Robert M, Kent, W James
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Journal Article
Landscape of immunogenic tumor antigens in successful immunotherapy of virally induced epithelial cancer
Stevanović, Sanja, Pasetto, Anna, Helman, Sarah R., Gartner, Jared J., Prickett, Todd D., Howie, Bryan, Robins, Harlan S., Robbins, Paul F., Klebanoff, Christopher A., Rosenberg, Steven A., Hinrichs, Christian S.
Published in Science (American Association for the Advancement of Science) (14.04.2017)
Published in Science (American Association for the Advancement of Science) (14.04.2017)
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Journal Article
UCSC Genome Browser enters 20th year
Lee, Christopher M, Barber, Galt P, Casper, Jonathan, Clawson, Hiram, Diekhans, Mark, Gonzalez, Jairo Navarro, Hinrichs, Angie S, Lee, Brian T, Nassar, Luis R, Powell, Conner C, Raney, Brian J, Rosenbloom, Kate R, Schmelter, Daniel, Speir, Matthew L, Zweig, Ann S, Haussler, David, Haeussler, Maximilian, Kuhn, Robert M, Kent, W James
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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A Phase II Study of Tumor-infiltrating Lymphocyte Therapy for Human Papillomavirus-associated Epithelial Cancers
Stevanović, Sanja, Helman, Sarah R, Wunderlich, John R, Langhan, Michelle M, Doran, Stacey L, Kwong, Mei Li M, Somerville, Robert P T, Klebanoff, Christopher A, Kammula, Udai S, Sherry, Richard M, Yang, James C, Rosenberg, Steven A, Hinrichs, Christian S
Published in Clinical cancer research (01.03.2019)
Published in Clinical cancer research (01.03.2019)
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Journal Article
Stability of SARS-CoV-2 phylogenies
Turakhia, Yatish, De Maio, Nicola, Thornlow, Bryan, Gozashti, Landen, Lanfear, Robert, Walker, Conor R, Hinrichs, Angie S, Fernandes, Jason D, Borges, Rui, Slodkowicz, Greg, Weilguny, Lukas, Haussler, David, Goldman, Nick, Corbett-Detig, Russell
Published in PLoS genetics (18.11.2020)
Published in PLoS genetics (18.11.2020)
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The UCSC Genome Browser database: extensions and updates 2011
Dreszer, Timothy R., Karolchik, Donna, Zweig, Ann S., Hinrichs, Angie S., Raney, Brian J., Kuhn, Robert M., Meyer, Laurence R., Wong, Mathew, Sloan, Cricket A., Rosenbloom, Kate R., Roe, Greg, Rhead, Brooke, Pohl, Andy, Malladi, Venkat S., Li, Chin H., Learned, Katrina, Kirkup, Vanessa, Hsu, Fan, Harte, Rachel A., Guruvadoo, Luvina, Goldman, Mary, Giardine, Belinda M., Fujita, Pauline A., Diekhans, Mark, Cline, Melissa S., Clawson, Hiram, Barber, Galt P., Haussler, David, James Kent, W.
Published in Nucleic acids research (01.01.2012)
Published in Nucleic acids research (01.01.2012)
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Journal Article
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
Siepel, Adam, Bejerano, Gill, Pedersen, Jakob S, Hinrichs, Angie S, Hou, Minmei, Rosenbloom, Kate, Clawson, Hiram, Spieth, John, Hillier, Ladeana W, Richards, Stephen, Weinstock, George M, Wilson, Richard K, Gibbs, Richard A, Kent, W James, Miller, Webb, Haussler, David
Published in Genome research (01.08.2005)
Published in Genome research (01.08.2005)
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Tumor-specific Th17-polarized cells eradicate large established melanoma
Muranski, Pawel, Boni, Andrea, Antony, Paul A., Cassard, Lydie, Irvine, Kari R., Kaiser, Andrew, Paulos, Chrystal M., Palmer, Douglas C., Touloukian, Christopher E., Ptak, Krzysztof, Gattinoni, Luca, Wrzesinski, Claudia, Hinrichs, Christian S., Kerstann, Keith W., Feigenbaum, Lionel, Chan, Chi-Chao, Restifo, Nicholas P.
Published in Blood (15.07.2008)
Published in Blood (15.07.2008)
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UCSC Genome Browser database: update 2011
Fujita, Pauline A, Rhead, Brooke, Zweig, Ann S, Hinrichs, Angie S, Karolchik, Donna, Cline, Melissa S, Goldman, Mary, Barber, Galt P, Clawson, Hiram, Coelho, Antonio, Diekhans, Mark, Dreszer, Timothy R, Giardine, Belinda M, Harte, Rachel A, Hillman-Jackson, Jennifer, Hsu, Fan, Kirkup, Vanessa, Kuhn, Robert M, Learned, Katrina, Li, Chin H, Meyer, Laurence R, Pohl, Andy, Raney, Brian J, Rosenbloom, Kate R, Smith, Kayla E, Haussler, David, Kent, W. James
Published in Nucleic acids research (01.01.2011)
Published in Nucleic acids research (01.01.2011)
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Bintrafusp alfa, a bifunctional fusion protein targeting TGF-β and PD-L1, in patients with human papillomavirus-associated malignancies
Strauss, Julius, Gatti-Mays, Margaret E, Cho, Byoung Chul, Hill, Andrew, Salas, Sébastien, McClay, Edward, Redman, Jason M, Sater, Houssein A, Donahue, Renee N, Jochems, Caroline, Lamping, Elizabeth, Burmeister, Andrea, Marté, Jennifer L, Cordes, Lisa M, Bilusic, Marijo, Karzai, Fatima, Ojalvo, Laureen S, Jehl, Genevieve, Rolfe, P Alexander, Hinrichs, Christian S, Madan, Ravi A, Schlom, Jeffrey, Gulley, James L
Published in Journal for immunotherapy of cancer (15.12.2020)
Published in Journal for immunotherapy of cancer (15.12.2020)
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Journal Article
Adoptively transferred effector cells derived from naïve rather than central memory CD8⁺ T cells mediate superior antitumor immunity
Hinrichs, Christian S, Borman, Zachary A, Cassard, Lydie, Gattinoni, Luca, Spolski, Rosanne, Yu, Zhiya, Sanchez-Perez, Luis, Muranski, Pawel, Kern, Steven J, Logun, Carol, Palmer, Douglas C, Ji, Yun, Reger, Robert N, Leonard, Warren J, Danner, Robert L, Rosenberg, Steven A, Restifo, Nicholas P
Published in Proceedings of the National Academy of Sciences - PNAS (13.10.2009)
Published in Proceedings of the National Academy of Sciences - PNAS (13.10.2009)
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Journal Article
UCSC Genome Browser database: update 2010
Rhead, Brooke, Karolchik, Donna, Kuhn, Robert M, Hinrichs, Angie S, Zweig, Ann S, Fujita, Pauline A, Diekhans, Mark, Smith, Kayla E, Rosenbloom, Kate R, Raney, Brian J, Pohl, Andy, Pheasant, Michael, Meyer, Laurence R, Learned, Katrina, Hsu, Fan, Hillman-Jackson, Jennifer, Harte, Rachel A, Giardine, Belinda, Dreszer, Timothy R, Clawson, Hiram, Barber, Galt P, Haussler, David, Kent, W. James
Published in Nucleic acids research (01.01.2010)
Published in Nucleic acids research (01.01.2010)
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Clinical evaluation of the BioFire® Respiratory Panel 2.1 and detection of SARS-CoV-2
Creager, Hannah M., Cabrera, Barbara, Schnaubelt, Andy, Cox, Jesse L., Cushman-Vokoun, Allison M., Shakir, Salika M., Tardif, Keith D., Huang, Meei-Li, Jerome, Keith R., Greninger, Alexander L., Drobysheva, Daria, Spaulding, Usha, Rogatcheva, Margarita, Bourzac, Kevin M., Hinrichs, S.H., Broadhurst, M.J., Fey, P.D.
Published in Journal of clinical virology (01.08.2020)
Published in Journal of clinical virology (01.08.2020)
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Journal Article
The UCSC Genome Browser
Karolchik, Donna, Hinrichs, Angie S, Kent, W James
Published in Current protocols in bioinformatics (01.12.2012)
Published in Current protocols in bioinformatics (01.12.2012)
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GenArk: towards a million UCSC genome browsers
Clawson, Hiram, Lee, Brian T, Raney, Brian J, Barber, Galt P, Casper, Jonathan, Diekhans, Mark, Fischer, Clay, Gonzalez, Jairo Navarro, Hinrichs, Angie S, Lee, Christopher M, Nassar, Luis R, Perez, Gerardo, Wick, Brittney, Schmelter, Daniel, Speir, Matthew L, Armstrong, Joel, Zweig, Ann S, Kuhn, Robert M, Kirilenko, Bogdan M, Hiller, Michael, Haussler, David, Kent, W James, Haeussler, Maximilian
Published in Genome Biology (02.10.2023)
Published in Genome Biology (02.10.2023)
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