Tara Oceans: towards global ocean ecosystems biology
Sunagawa, Shinichi, Acinas, Silvia G., Bork, Peer, Bowler, Chris, Eveillard, Damien, Gorsky, Gabriel, Guidi, Lionel, Iudicone, Daniele, Karsenti, Eric, Lombard, Fabien, Ogata, Hiroyuki, Pesant, Stephane, Sullivan, Matthew B., Wincker, Patrick, de Vargas, Colomban
Published in Nature reviews. Microbiology (01.08.2020)
Published in Nature reviews. Microbiology (01.08.2020)
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Microbial abundance, activity and population genomic profiling with mOTUs2
Milanese, Alessio, Mende, Daniel R, Paoli, Lucas, Salazar, Guillem, Ruscheweyh, Hans-Joachim, Cuenca, Miguelangel, Hingamp, Pascal, Alves, Renato, Costea, Paul I, Coelho, Luis Pedro, Schmidt, Thomas S. B., Almeida, Alexandre, Mitchell, Alex L, Finn, Robert D., Huerta-Cepas, Jaime, Bork, Peer, Zeller, Georg, Sunagawa, Shinichi
Published in Nature communications (04.03.2019)
Published in Nature communications (04.03.2019)
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Linking Virus Genomes with Host Taxonomy
Mihara, Tomoko, Nishimura, Yosuke, Shimizu, Yugo, Nishiyama, Hiroki, Yoshikawa, Genki, Uehara, Hideya, Hingamp, Pascal, Goto, Susumu, Ogata, Hiroyuki
Published in Viruses (01.03.2016)
Published in Viruses (01.03.2016)
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The Ocean Gene Atlas: exploring the biogeography of plankton genes online
Villar, Emilie, Vannier, Thomas, Vernette, Caroline, Lescot, Magali, Cuenca, Miguelangel, Alexandre, Aurélien, Bachelerie, Paul, Rosnet, Thomas, Pelletier, Eric, Sunagawa, Shinichi, Hingamp, Pascal
Published in Nucleic acids research (02.07.2018)
Published in Nucleic acids research (02.07.2018)
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Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities
Logares, Ramiro, Sunagawa, Shinichi, Salazar, Guillem, Cornejo‐Castillo, Francisco M, Ferrera, Isabel, Sarmento, Hugo, Hingamp, Pascal, Ogata, Hiroyuki, Vargas, Colomban, Lima‐Mendez, Gipsi, Raes, Jeroen, Poulain, Julie, Jaillon, Olivier, Wincker, Patrick, Kandels‐Lewis, Stefanie, Karsenti, Eric, Bork, Peer, Acinas, Silvia G
Published in Environmental microbiology (01.09.2014)
Published in Environmental microbiology (01.09.2014)
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QDD version 3.1: a user‐friendly computer program for microsatellite selection and primer design revisited: experimental validation of variables determining genotyping success rate
Meglécz, Emese, Pech, Nicolas, Gilles, André, Dubut, Vincent, Hingamp, Pascal, Trilles, Aurélie, Grenier, Rémi, Martin, Jean‐François
Published in Molecular ecology resources (01.11.2014)
Published in Molecular ecology resources (01.11.2014)
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Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes
Hingamp, Pascal, Grimsley, Nigel, Acinas, Silvia G, Clerissi, Camille, Subirana, Lucie, Poulain, Julie, Ferrera, Isabel, Sarmento, Hugo, Villar, Emilie, Lima-Mendez, Gipsi, Faust, Karoline, Sunagawa, Shinichi, Claverie, Jean-Michel, Moreau, Hervé, Desdevises, Yves, Bork, Peer, Raes, Jeroen, de Vargas, Colomban, Karsenti, Eric, Kandels-Lewis, Stefanie, Jaillon, Olivier, Not, Fabrice, Pesant, Stéphane, Wincker, Patrick, Ogata, Hiroyuki
Published in The ISME Journal (01.09.2013)
Published in The ISME Journal (01.09.2013)
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Open science resources for the discovery and analysis of Tara Oceans data
Pesant, Stéphane, Not, Fabrice, Picheral, Marc, Kandels-Lewis, Stefanie, Le Bescot, Noan, Gorsky, Gabriel, Iudicone, Daniele, Karsenti, Eric, Speich, Sabrina, Troublé, Romain, Dimier, Céline, Searson, Sarah
Published in Scientific data (26.05.2015)
Published in Scientific data (26.05.2015)
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Environmental Viral Genomes Shed New Light on Virus-Host Interactions in the Ocean
Nishimura, Yosuke, Watai, Hiroyasu, Honda, Takashi, Mihara, Tomoko, Omae, Kimiho, Roux, Simon, Blanc-Mathieu, Romain, Yamamoto, Keigo, Hingamp, Pascal, Sako, Yoshihiko, Sullivan, Matthew B, Goto, Susumu, Ogata, Hiroyuki, Yoshida, Takashi
Published in mSphere (01.03.2017)
Published in mSphere (01.03.2017)
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Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan
Yoshida, Takashi, Nishimura, Yosuke, Watai, Hiroyasu, Haruki, Nana, Morimoto, Daichi, Kaneko, Hiroto, Honda, Takashi, Yamamoto, Keigo, Hingamp, Pascal, Sako, Yoshihiko, Goto, Susumu, Ogata, Hiroyuki
Published in The ISME Journal (01.05.2018)
Published in The ISME Journal (01.05.2018)
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Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton
Cornejo-Castillo, Francisco M., Cabello, Ana M., Salazar, Guillem, Sánchez-Baracaldo, Patricia, Lima-Mendez, Gipsi, Hingamp, Pascal, Alberti, Adriana, Sunagawa, Shinichi, Bork, Peer, de Vargas, Colomban, Raes, Jeroen, Bowler, Chris, Wincker, Patrick, Zehr, Jonathan P., Gasol, Josep M., Massana, Ramon, Acinas, Silvia G.
Published in Nature communications (22.03.2016)
Published in Nature communications (22.03.2016)
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Degenerate PCR Primers to Reveal the Diversity of Giant Viruses in Coastal Waters
Li, Yanze, Hingamp, Pascal, Watai, Hiroyasu, Endo, Hisashi, Yoshida, Takashi, Ogata, Hiroyuki
Published in Viruses (13.09.2018)
Published in Viruses (13.09.2018)
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mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus
Legendre, Matthieu, Audic, Stéphane, Poirot, Olivier, Hingamp, Pascal, Seltzer, Virginie, Byrne, Deborah, Lartigue, Audrey, Lescot, Magali, Bernadac, Alain, Poulain, Julie, Abergel, Chantal, Claverie, Jean-Michel
Published in Genome research (01.05.2010)
Published in Genome research (01.05.2010)
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Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean
Royo-Llonch, Marta, Sánchez, Pablo, Ruiz-González, Clara, Salazar, Guillem, Pedrós-Alió, Carlos, Sebastián, Marta, Labadie, Karine, Paoli, Lucas, M. Ibarbalz, Federico, Zinger, Lucie, Churcheward, Benjamin, Chaffron, Samuel, Eveillard, Damien, Karsenti, Eric, Sunagawa, Shinichi, Wincker, Patrick, Karp-Boss, Lee, Bowler, Chris, Acinas, Silvia G.
Published in Nature microbiology (01.12.2021)
Published in Nature microbiology (01.12.2021)
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Minimum information about a microarray experiment (MIAME)-toward standards for microarray data
Gaasterland, Terry, Taylor, Ronald, Glenisson, Patrick, Ball, Catherine A, Kim, Irene F, Robinson, Alan, Stoeckert, Chris, Matese, John C, Parkinson, Helen, Sarkans, Ugis, Vingron, Martin, Brazma, Alvis, Sherlock, Gavin, Vilo, Jaak, Stewart, Jason, Ansorge, Wilhelm, Markowitz, Victor, Quackenbush, John, Hingamp, Pascal, Holstege, Frank C.P, Spellman, Paul, Aach, John, Schulze-Kremer, Steffen, Causton, Helen C
Published in Nature genetics (01.12.2001)
Published in Nature genetics (01.12.2001)
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Author Correction: Macroscale patterns of oceanic zooplankton composition and size structure
Brandão, Manoela C., Benedetti, Fabio, Martini, Séverine, Soviadan, Yawouvi Dodji, Irisson, Jean-Olivier, Romagnan, Jean-Baptiste, Elineau, Amanda, Desnos, Corinne, Jalabert, Laëtitia, Freire, Andrea S., Picheral, Marc, Guidi, Lionel, Gorsky, Gabriel, Bowler, Chris, Karp-Boss, Lee, Henry, Nicolas, de Vargas, Colomban, Sullivan, Matthew B., Stemmann, Lars, Lombard, Fabien
Published in Scientific reports (06.10.2021)
Published in Scientific reports (06.10.2021)
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Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages
Lescot, Magali, Hingamp, Pascal, Kojima, Kenji K, Villar, Emilie, Romac, Sarah, Veluchamy, Alaguraj, Boccara, Martine, Jaillon, Olivier, Iudicone, Daniele, Bowler, Chris, Wincker, Patrick, Claverie, Jean-Michel, Ogata, Hiroyuki
Published in The ISME Journal (01.05.2016)
Published in The ISME Journal (01.05.2016)
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Predicting global distributions of eukaryotic plankton communities from satellite data
Kaneko, Hiroto, Endo, Hisashi, Henry, Nicolas, Berney, Cédric, Mahé, Frédéric, Poulain, Julie, Labadie, Karine, Beluche, Odette, El Hourany, Roy, Acinas, Silvia G, Babin, Marcel, Bork, Peer, Bowler, Chris, Cochrane, Guy, de Vargas, Colomban, Gorsky, Gabriel, Guidi, Lionel, Grimsley, Nigel, Hingamp, Pascal, Iudicone, Daniele, Jaillon, Olivier, Kandels, Stefanie, Karsenti, Eric, Not, Fabrice, Poulton, Nicole, Pesant, Stéphane, Sardet, Christian, Speich, Sabrina, Stemmann, Lars, Sullivan, Matthew B, Sunagawa, Shinichi, Chaffron, Samuel, Wincker, Patrick, Nakamura, Ryosuke, Karp-Boss, Lee, Boss, Emmanuel, Bowler, Chris, de Vargas, Colomban, Tomii, Kentaro, Ogata, Hiroyuki
Published in ISME Communications (22.09.2023)
Published in ISME Communications (22.09.2023)
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Deep sequencing of amplified Prasinovirus and host green algal genes from an Indian Ocean transect reveals interacting trophic dependencies and new genotypes
Clerissi, Camille, Desdevises, Yves, Romac, Sarah, Audic, Stéphane, Vargas, Colomban, Acinas, Silvia G, Casotti, Raffaella, Poulain, Julie, Wincker, Patrick, Hingamp, Pascal, Ogata, Hiroyuki, Grimsley, Nigel
Published in Environmental microbiology reports (01.12.2015)
Published in Environmental microbiology reports (01.12.2015)
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