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Published in Nature communications (18.05.2020)
Published in Nature communications (18.05.2020)
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Evaluation of alcohol-free mouthwash for studies of the oral microbiome
Yano, Yukiko, Vogtmann, Emily, Shreves, Alaina H, Weinstein, Stephanie J, Black, Amanda, Diaz-Mayoral, Norma, Wan, Yunhu, Zhou, Weiyin, Hua, Xing, Dagnall, Casey L, Hutchinson, Amy, Jones, Kristine, Hicks, Belynda D, Wyatt, Kathleen, Brotzman, Michelle, Gerlanc, Nicole, Huang, Wen-Yi, Albert, Paul S, Wentzensen, Nicolas, Abnet, Christian C
Published in PloS one (27.04.2023)
Published in PloS one (27.04.2023)
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Whole genome sequencing of skull-base chordoma reveals genomic alterations associated with recurrence and chordoma-specific survival
Bai, Jiwei, Shi, Jianxin, Li, Chuzhong, Wang, Shuai, Zhang, Tongwu, Hua, Xing, Zhu, Bin, Koka, Hela, Wu, Ho-Hsiang, Song, Lei, Wang, Difei, Wang, Mingyi, Zhou, Weiyin, Ballew, Bari J., Zhu, Bin, Hicks, Belynda, Mirabello, Lisa, Parry, Dilys M., Zhai, Yixuan, Li, Mingxuan, Du, Jiang, Wang, Junmei, Zhang, Shuheng, Liu, Qian, Zhao, Peng, Gui, Songbai, Goldstein, Alisa M., Zhang, Yazhuo, Yang, Xiaohong R.
Published in Nature communications (03.02.2021)
Published in Nature communications (03.02.2021)
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The Oral Microbiome and Lung Cancer Risk: An Analysis of 3 Prospective Cohort Studies
Vogtmann, Emily, Hua, Xing, Yu, Guoqin, Purandare, Vaishnavi, Hullings, Autumn G, Shao, Dantong, Wan, Yunhu, Li, Shilan, Dagnall, Casey L, Jones, Kristine, Hicks, Belynda D, Hutchinson, Amy, Caporaso, J Gregory, Wheeler, William, Sandler, Dale P, Beane Freeman, Laura E, Liao, Linda M, Huang, Wen-Yi, Freedman, Neal D, Caporaso, Neil E, Sinha, Rashmi, Gail, Mitchell H, Shi, Jianxin, Abnet, Christian C
Published in JNCI : Journal of the National Cancer Institute (14.11.2022)
Published in JNCI : Journal of the National Cancer Institute (14.11.2022)
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Radiation-related genomic profile of papillary thyroid carcinoma after the Chernobyl accident
Morton, Lindsay M, Karyadi, Danielle M, Stewart, Chip, Bogdanova, Tetiana I, Dawson, Eric T, Steinberg, Mia K, Dai, Jieqiong, Hartley, Stephen W, Schonfeld, Sara J, Sampson, Joshua N, Maruvka, Yosef E, Kapoor, Vidushi, Ramsden, Dale A, Carvajal-Garcia, Juan, Perou, Charles M, Parker, Joel S, Krznaric, Marko, Yeager, Meredith, Boland, Joseph F, Hutchinson, Amy, Hicks, Belynda D, Dagnall, Casey L, Gastier-Foster, Julie M, Bowen, Jay, Lee, Olivia, Machiela, Mitchell J, Cahoon, Elizabeth K, Brenner, Alina V, Mabuchi, Kiyohiko, Drozdovitch, Vladimir, Masiuk, Sergii, Chepurny, Mykola, Zurnadzhy, Liudmyla Yu, Hatch, Maureen, Berrington de Gonzalez, Amy, Thomas, Gerry A, Tronko, Mykola D, Getz, Gad, Chanock, Stephen J
Published in Science (American Association for the Advancement of Science) (14.05.2021)
Published in Science (American Association for the Advancement of Science) (14.05.2021)
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SomaticCombiner: improving the performance of somatic variant calling based on evaluation tests and a consensus approach
Wang, Mingyi, Luo, Wen, Jones, Kristine, Bian, Xiaopeng, Williams, Russell, Higson, Herbert, Wu, Dongjing, Hicks, Belynda, Yeager, Meredith, Zhu, Bin
Published in Scientific reports (30.07.2020)
Published in Scientific reports (30.07.2020)
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Somatic Genomics and Clinical Features of Lung Adenocarcinoma: A Retrospective Study
Shi, Jianxin, Hua, Xing, Zhu, Bin, Ravichandran, Sarangan, Wang, Mingyi, Nguyen, Cu, Brodie, Seth A, Palleschi, Alessandro, Alloisio, Marco, Pariscenti, Gianluca, Jones, Kristine, Zhou, Weiyin, Bouk, Aaron J, Boland, Joseph, Hicks, Belynda, Risch, Adam, Bennett, Hunter, Luke, Brian T, Song, Lei, Duan, Jubao, Liu, Pengyuan, Kohno, Takashi, Chen, Qingrong, Meerzaman, Daoud, Marconett, Crystal, Laird-Offringa, Ite, Mills, Ian, Caporaso, Neil E, Gail, Mitchell H, Pesatori, Angela C, Consonni, Dario, Bertazzi, Pier Alberto, Chanock, Stephen J, Landi, Maria Teresa
Published in PLoS medicine (06.12.2016)
Published in PLoS medicine (06.12.2016)
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Novel and known ribosomal causes of Diamond-Blackfan anaemia identified through comprehensive genomic characterisation
Mirabello, Lisa, Khincha, Payal P, Ellis, Steven R, Giri, Neelam, Brodie, Seth, Chandrasekharappa, Settara C, Donovan, Frank X, Zhou, Weiyin, Hicks, Belynda D, Boland, Joseph F, Yeager, Meredith, Jones, Kristine, Zhu, Bin, Wang, Mingyi, Alter, Blanche P, Savage, Sharon A
Published in Journal of medical genetics (01.06.2017)
Published in Journal of medical genetics (01.06.2017)
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Genome‐wide association study identifies the GLDC/IL33 locus associated with survival of osteosarcoma patients
Koster, Roelof, Panagiotou, Orestis A., Wheeler, William A., Karlins, Eric, Gastier‐Foster, Julie M., Caminada de Toledo, Silvia Regina, Petrilli, Antonio S., Flanagan, Adrienne M., Tirabosco, Roberto, Andrulis, Irene L., Wunder, Jay S., Gokgoz, Nalan, Patiño‐Garcia, Ana, Lecanda, Fernando, Serra, Massimo, Hattinger, Claudia, Picci, Piero, Scotlandi, Katia, Thomas, David M., Ballinger, Mandy L., Gorlick, Richard, Barkauskas, Donald A., Spector, Logan G., Tucker, Margaret, Belynda, D. Hicks, Yeager, Meredith, Hoover, Robert N., Wacholder, Sholom, Chanock, Stephen J., Savage, Sharon A., Mirabello, Lisa
Published in International journal of cancer (15.04.2018)
Published in International journal of cancer (15.04.2018)
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Comparing the performance of selected variant callers using synthetic data and genome segmentation
Bian, Xiaopeng, Zhu, Bin, Wang, Mingyi, Hu, Ying, Chen, Qingrong, Nguyen, Cu, Hicks, Belynda, Meerzaman, Daoud
Published in BMC bioinformatics (19.11.2018)
Published in BMC bioinformatics (19.11.2018)
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Hoyeraal-Hreidarsson syndrome caused by a germline mutation in the TEL patch of the telomere protein TPP1
Kocak, Hande, Ballew, Bari J, Bisht, Kamlesh, Eggebeen, Rebecca, Hicks, Belynda D, Suman, Shalabh, O'Neil, Adri, Giri, Neelam, Maillard, Ivan, Alter, Blanche P, Keegan, Catherine E, Nandakumar, Jayakrishnan, Savage, Sharon A
Published in Genes & development (01.10.2014)
Published in Genes & development (01.10.2014)
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Frequency of Pathogenic Germline Variants in Cancer-Susceptibility Genes in Patients With Osteosarcoma
Mirabello, Lisa, Zhu, Bin, Koster, Roelof, Karlins, Eric, Dean, Michael, Yeager, Meredith, Gianferante, Matthew, Spector, Logan G, Morton, Lindsay M, Karyadi, Danielle, Robison, Leslie L, Armstrong, Gregory T, Bhatia, Smita, Song, Lei, Pankratz, Nathan, Pinheiro, Maisa, Gastier-Foster, Julie M, Gorlick, Richard, de Toledo, Silvia Regina Caminada, Petrilli, Antonio S, Patino-Garcia, Ana, Lecanda, Fernando, Gutierrez-Jimeno, Miriam, Serra, Massimo, Hattinger, Claudia, Picci, Piero, Scotlandi, Katia, Flanagan, Adrienne M, Tirabosco, Roberto, Amary, Maria Fernanda, Kurucu, Nilgün, Ilhan, Inci Ergurhan, Ballinger, Mandy L, Thomas, David M, Barkauskas, Donald A, Mejia-Baltodano, Gerardo, Valverde, Patricia, Hicks, Belynda D, Zhu, Bin, Wang, Mingyi, Hutchinson, Amy A, Tucker, Margaret, Sampson, Joshua, Landi, Maria T, Freedman, Neal D, Gapstur, Susan, Carter, Brian, Hoover, Robert N, Chanock, Stephen J, Savage, Sharon A
Published in JAMA oncology (01.05.2020)
Published in JAMA oncology (01.05.2020)
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The genomic and epigenomic evolutionary history of papillary renal cell carcinomas
Zhu, Bin, Poeta, Maria Luana, Costantini, Manuela, Zhang, Tongwu, Shi, Jianxin, Sentinelli, Steno, Zhao, Wei, Pompeo, Vincenzo, Cardelli, Maurizio, Alexandrov, Boian S., Otlu, Burcak, Hua, Xing, Jones, Kristine, Brodie, Seth, Dabrowska, Malgorzata Ewa, Toro, Jorge R., Yeager, Meredith, Wang, Mingyi, Hicks, Belynda, Alexandrov, Ludmil B., Brown, Kevin M., Wedge, David C., Chanock, Stephen, Fazio, Vito Michele, Gallucci, Michele, Landi, Maria Teresa
Published in Nature communications (18.06.2020)
Published in Nature communications (18.06.2020)
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Effect of pre-analytic variables on the reproducibility of qPCR relative telomere length measurement
Dagnall, Casey L, Hicks, Belynda, Teshome, Kedest, Hutchinson, Amy A, Gadalla, Shahinaz M, Khincha, Payal P, Yeager, Meredith, Savage, Sharon A
Published in PloS one (08.09.2017)
Published in PloS one (08.09.2017)
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The oral microbiome and breast cancer and nonmalignant breast disease, and its relationship with the fecal microbiome in the Ghana Breast Health Study
Wu, Zeni, Byrd, Doratha A., Wan, Yunhu, Ansong, Daniel, Clegg‐Lamptey, Joe‐Nat, Wiafe‐Addai, Beatrice, Edusei, Lawrence, Adjei, Ernest, Titiloye, Nicholas, Dedey, Florence, Aitpillah, Francis, Oppong, Joseph, Vanderpuye, Verna, Osei‐Bonsu, Ernest, Dagnall, Casey L., Jones, Kristine, Hutchinson, Amy, Hicks, Belynda D., Ahearn, Thomas U., Shi, Jianxin, Knight, Rob, Biritwum, Richard, Yarney, Joel, Wiafe, Seth, Awuah, Baffour, Nyarko, Kofi, Figueroa, Jonine D., Sinha, Rashmi, Garcia‐Closas, Montserrat, Brinton, Louise A., Vogtmann, Emily
Published in International journal of cancer (15.10.2022)
Published in International journal of cancer (15.10.2022)
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Oral microbiome and risk of incident head and neck cancer: A nested case-control study
Wu, Zeni, Han, Yongli, Wan, Yunhu, Hua, Xing, Chill, Samantha S., Teshome, Kedest, Zhou, Weiyin, Liu, Jia, Wu, Dongjing, Hutchinson, Amy, Jones, Kristine, Dagnall, Casey L., Hicks, Belynda D., Liao, Linda, Hallen-Adams, Heather, Shi, Jianxin, Abnet, Christian C., Sinha, Rashmi, Chaturvedi, Anil, Vogtmann, Emily
Published in Oral oncology (01.02.2023)
Published in Oral oncology (01.02.2023)
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Endemic Burkitt Lymphoma in second-degree relatives in Northern Uganda: in-depth genome-wide analysis suggests clues about genetic susceptibility
Gouveia, Mateus H., Otim, Isaac, Ogwang, Martin D., Wang, Mingyi, Zhu, Bin, Cole, Nathan, Luo, Wen, Hicks, Belynda, Jones, Kristine, Oehl-Huber, Kathrin, Ayers, Leona W., Pittaluga, Stefania, Legason, Ismail D., Nabalende, Hadijah, Kerchan, Patrick, Kinyera, Tobias, Kawira, Esther, Brubaker, Glen, Levin, Arthur G., Guertler, Lutz, Kim, Jung, Stewart, Douglas R., Adde, Melissa, Magrath, Ian, Bergen, Andrew W., Reynolds, Steven J., Yeager, Meredith, Bhatia, Kishor, Adeyemo, Adebowale A., Prokunina-Olsson, Ludmila, Dean, Michael, Shriner, Daniel, Rotimi, Charles N., Chanock, Stephen, Siebert, Reiner, Mbulaiteye, Sam M.
Published in Leukemia (01.04.2021)
Published in Leukemia (01.04.2021)
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Whole-exome sequencing and functional studies identify RPS29 as a novel gene mutated in multicase Diamond-Blackfan anemia families
Mirabello, Lisa, Macari, Elizabeth R., Jessop, Lea, Ellis, Steven R., Myers, Timothy, Giri, Neelam, Taylor, Alison M., McGrath, Katherine E., Humphries, Jessica M., Ballew, Bari J., Yeager, Meredith, Boland, Joseph F., He, Ji, Hicks, Belynda D., Burdett, Laurie, Alter, Blanche P., Zon, Leonard, Savage, Sharon A.
Published in Blood (03.07.2014)
Published in Blood (03.07.2014)
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Immune gene expression profiling reveals heterogeneity in luminal breast tumors
Zhu, Bin, Tse, Lap Ah, Wang, Difei, Koka, Hela, Zhang, Tongwu, Abubakar, Mustapha, Lee, Priscilla, Wang, Feng, Wu, Cherry, Tsang, Koon Ho, Chan, Wing-Cheong, Law, Sze Hong, Li, Mengjie, Li, Wentao, Wu, Suyang, Liu, Zhiguang, Huang, Bixia, Zhang, Han, Tang, Eric, Kan, Zhengyan, Lee, Soohyeon, Park, Yeon Hee, Nam, Seok Jin, Wang, Mingyi, Sun, Xuezheng, Jones, Kristine, Zhu, Bin, Hutchinson, Amy, Hicks, Belynda, Prokunina-Olsson, Ludmila, Shi, Jianxin, Garcia-Closas, Montserrat, Chanock, Stephen, Yang, Xiaohong R
Published in Breast cancer research : BCR (19.12.2019)
Published in Breast cancer research : BCR (19.12.2019)
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High-throughput single nucleotide polymorphism genotyping using nanofluidic Dynamic Arrays
Wang, Jun, Lin, Min, Crenshaw, Andrew, Hutchinson, Amy, Hicks, Belynda, Yeager, Meredith, Berndt, Sonja, Huang, Wen-Yi, Hayes, Richard B, Chanock, Stephen J, Jones, Robert C, Ramakrishnan, Ramesh
Published in BMC genomics (28.11.2009)
Published in BMC genomics (28.11.2009)
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