Cellular Differentiation of Human Monocytes Is Regulated by Time-Dependent Interleukin-4 Signaling and the Transcriptional Regulator NCOR2
Sander, Jil, Schmidt, Susanne V., Cirovic, Branko, McGovern, Naomi, Papantonopoulou, Olympia, Hardt, Anna-Lena, Aschenbrenner, Anna C., Kreer, Christoph, Quast, Thomas, Xu, Alexander M., Schmidleithner, Lisa M., Theis, Heidi, Thi Huong, Lan Do, Sumatoh, Hermi Rizal Bin, Lauterbach, Mario A.R., Schulte-Schrepping, Jonas, Günther, Patrick, Xue, Jia, Baßler, Kevin, Ulas, Thomas, Klee, Kathrin, Katzmarski, Natalie, Herresthal, Stefanie, Krebs, Wolfgang, Martin, Bianca, Latz, Eicke, Händler, Kristian, Kraut, Michael, Kolanus, Waldemar, Beyer, Marc, Falk, Christine S., Wiegmann, Bettina, Burgdorf, Sven, Melosh, Nicholas A., Newell, Evan W., Ginhoux, Florent, Schlitzer, Andreas, Schultze, Joachim L.
Published in Immunity (Cambridge, Mass.) (19.12.2017)
Published in Immunity (Cambridge, Mass.) (19.12.2017)
Get full text
Journal Article
The Myeloid Cell Compartment-Cell by Cell
Bassler, Kevin, Schulte-Schrepping, Jonas, Warnat-Herresthal, Stefanie, Aschenbrenner, Anna C, Schultze, Joachim L
Published in Annual review of immunology (26.04.2019)
Published in Annual review of immunology (26.04.2019)
Get full text
Journal Article
CRELD1 modulates homeostasis of the immune system in mice and humans
Bonaguro, Lorenzo, Köhne, Maren, Schmidleithner, Lisa, Schulte-Schrepping, Jonas, Warnat-Herresthal, Stefanie, Horne, Arik, Kern, Paul, Günther, Patrick, Ter Horst, Rob, Jaeger, Martin, Rahmouni, Souad, Georges, Michel, Falk, Christine S, Li, Yang, Mass, Elvira, Beyer, Marc, Joosten, Leo A B, Netea, Mihai G, Ulas, Thomas, Schultze, Joachim L, Aschenbrenner, Anna C
Published in Nature immunology (01.12.2020)
Published in Nature immunology (01.12.2020)
Get full text
Journal Article
Web Resource
Scalable Prediction of Acute Myeloid Leukemia Using High-Dimensional Machine Learning and Blood Transcriptomics
Warnat-Herresthal, Stefanie, Perrakis, Konstantinos, Taschler, Bernd, Becker, Matthias, Baßler, Kevin, Beyer, Marc, Günther, Patrick, Schulte-Schrepping, Jonas, Seep, Lea, Klee, Kathrin, Ulas, Thomas, Haferlach, Torsten, Mukherjee, Sach, Schultze, Joachim L.
Published in iScience (24.01.2020)
Published in iScience (24.01.2020)
Get full text
Journal Article
Alveolar macrophages in early stage COPD show functional deviations with properties of impaired immune activation
Baßler, Kevin, Fujii, Wataru, Kapellos, Theodore S., Dudkin, Erika, Reusch, Nico, Horne, Ari, Reiz, Benedikt, Luecken, Malte D., Osei-Sarpong, Collins, Warnat-Herresthal, Stefanie, Bonaguro, Lorenzo, Schulte-Schrepping, Jonas, Wagner, Allon, Günther, Patrick, Pizarro, Carmen, Schreiber, Tina, Knoll, Rainer, Holsten, Lisa, Kröger, Charlotte, De Domenico, Elena, Becker, Matthias, Händler, Kristian, Wohnhaas, Christian T., Baumgartner, Florian, Köhler, Meike, Theis, Heidi, Kraut, Michael, Wadsworth, Marc H., Hughes, Travis K., Ferreira, Humberto J., Hinkley, Emily, Kaltheuner, Ines H., Geyer, Matthias, Thiele, Christoph, Shalek, Alex K., Feißt, Andreas, Thomas, Daniel, Dickten, Henning, Beyer, Marc, Baum, Patrick, Yosef, Nir, Aschenbrenner, Anna C., Ulas, Thomas, Hasenauer, Jan, Theis, Fabian J., Skowasch, Dirk, Schultze, Joachim L.
Published in Frontiers in immunology (28.07.2022)
Published in Frontiers in immunology (28.07.2022)
Get full text
Journal Article
Identification of drug candidates targeting monocyte reprogramming in people living with HIV
Knoll, Rainer, Bonaguro, Lorenzo, Dos Santos, Jéssica C, Warnat-Herresthal, Stefanie, Jacobs-Cleophas, Maartje C P, Blümel, Edda, Reusch, Nico, Horne, Arik, Herbert, Miriam, Nuesch-Germano, Melanie, Otten, Twan, van der Heijden, Wouter A, van de Wijer, Lisa, Shalek, Alex K, Händler, Kristian, Becker, Matthias, Beyer, Marc D, Netea, Mihai G, Joosten, Leo A B, van der Ven, Andre J A M, Schultze, Joachim L, Aschenbrenner, Anna C
Published in Frontiers in immunology (2023)
Published in Frontiers in immunology (2023)
Get full text
Journal Article
104: LONGITUDINAL SINGLE CELL TRANSCRIPTION PROFILING OF PERIPHERAL BLOOD DISENTANGLES SHARED AND BIOLOGIC-SPECIFIC PATTERNS OF EARLY REMISSION IN ACTIVE IBD PATIENTS
Bernardes, Joana P., Mishra, Neha, Schulte-Schrepping, Jonas, Herresthal, Stefanie, Tran, Florian, Aden, Konrad, Schultze, Joachim, Rosenstiel, Philip
Published in Gastroenterology (New York, N.Y. 1943) (01.05.2022)
Published in Gastroenterology (New York, N.Y. 1943) (01.05.2022)
Get full text
Journal Article
Inactivation of ceramide synthase 2 catalytic activity in mice affects transcription of genes involved in lipid metabolism and cell division
Bickert, Andreas, Kern, Paul, van Uelft, Martina, Herresthal, Stefanie, Ulas, Thomas, Gutbrod, Katharina, Breiden, Bernadette, Degen, Joachim, Sandhoff, Konrad, Schultze, Joachim L., Dörmann, Peter, Hartmann, Dieter, Bauer, Reinhard, Willecke, Klaus
Published in Biochimica et biophysica acta. Molecular and cell biology of lipids (01.07.2018)
Published in Biochimica et biophysica acta. Molecular and cell biology of lipids (01.07.2018)
Get full text
Journal Article
Longitudinal multi-omics analysis identifies early blood-based predictors of anti-TNF therapy response in inflammatory bowel disease
Mishra, Neha, Aden, Konrad, Blase, Johanna I, Baran, Nathan, Bordoni, Dora, Tran, Florian, Conrad, Claudio, Avalos, Diana, Jaeckel, Charlot, Scherer, Michael, Sarensen, Signe B, Overgaard, Silja H, Schulte, Berenice, Nikolaus, Susanna, Rey, Guillaume, Gasparoni, Gilles, Lyons, Paul A, Schultze, Joachim L, Walter, Jörn, Andersen, Vibeke, Banos, Aggelos, Bertsias, George, Beyer, Marc, Boumpas, Dimitrios, Finckh, Axel, Franke, Andre, Georges, Michel, Gu, Wei, Häsler, Robert, Jawhara, Mohamad, Kenyon, Amy, Kratsch, Christina, Krause, Roland, Lauc, Gordan, Mangino, Massimo, Natoli, Gioacchino, Ostaszewski, Marek, Pezer, Marija, Raes, Jeroen, Rahmouni, Souad, Ramos-Pamplona, Marilou, Reiz, Benedikt, Rosati, Elisa, Sanoudou, Despina, Satagopam, Venkata, Schneider, Reinhard, Schulte-Schrepping, Jonas, Sidiropoulos, Prodromos, Smith, Kenneth G. C, Spector, Timothy, Vandeputte, Doris, Vieira-Silva, Sara, Vojta, Aleksandar, Warnat-Herresthal, Stefanie, ZoldoÅ¡, Vlatka
Published in Genome medicine (24.09.2022)
Published in Genome medicine (24.09.2022)
Get full text
Journal Article
Web Resource
Machine learning models for outcome prediction in thrombectomy for large anterior vessel occlusion
Shirvani, Omid, Warnat-Herresthal, Stefanie, Savchuk, Ivan, Bode, Felix J, Nitsch, Louisa, Stösser, Sebastian, Ebrahimi, Taraneh, von Danwitz, Niklas, Asperger, Hannah, Layer, Julia, Meissner, Julius, Thielscher, Christian, Dorn, Franziska, Lehnen, Nils, Schultze, Joachim L, Petzold, Gabor C, Weller, Johannes M
Published in Annals of clinical and translational neurology (23.08.2024)
Published in Annals of clinical and translational neurology (23.08.2024)
Get full text
Journal Article
Mature neutrophils and a NF-κB-to-IFN transition determine the unifying disease recovery dynamics in COVID-19
Frishberg, Amit, Kooistra, Emma, Nuesch-Germano, Melanie, Pecht, Tal, Milman, Neta, Reusch, Nico, Warnat-Herresthal, Stefanie, Bruse, Niklas, Händler, Kristian, Theis, Heidi, Kraut, Michael, van Rijssen, Esther, van Cranenbroek, Bram, Koenen, Hans JPM, Heesakkers, Hidde, van den Boogaard, Mark, Zegers, Marieke, Pickkers, Peter, Becker, Matthias, Aschenbrenner, Anna C., Ulas, Thomas, Theis, Fabian J., Shen-Orr, Shai S., Schultze, Joachim L., Kox, Matthijs
Published in Cell Reports Medicine (21.06.2022)
Published in Cell Reports Medicine (21.06.2022)
Get full text
Journal Article
Web Resource
Accelerated Genomics Data Processing using Memory-Driven Computing
Becker, Matthias, Schultze, Hartmut, Ulas, Thomas, Singhal, Sharad, Schultze, Joachim L., Chabbi, Milind, Warnat-Herresthal, Stefanie, Worlikar, Umesh, Agrawal, Shobhit, Bhat, Jaydeep, Schulte-Schrepping, Jonas, Bassler, Kevin, Guenther, Patrick
Published in 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) (01.11.2019)
Published in 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) (01.11.2019)
Get full text
Conference Proceeding
Unveiling the Power of High-Dimensional Cytometry Data with cyCONDOR
Kroeger, Charlotte, Mueller, Sophie, Leidner, Jacqueline, Kroeber, Theresa, Warnat-Herresthal, Stefanie, Spintge, Jannis B, Zajac, Timo, Frolov, Aleksej, Carraro, Caterina, Puccio, Simone, Schultze, Joachim L, Pecht, Tal, Beyer, Marc D, Bonaguro, Lorenzo
Published in bioRxiv (03.03.2024)
Published in bioRxiv (03.03.2024)
Get full text
Paper
Memory-driven computing accelerates genomic data processing
Becker, Matthias, Chabbi, Milind, Warnat-Herresthal, Stefanie, Klee, Kathrin, Schulte-Schrepping, Jonas, Biernat, Pawel, Guenther, Patrick, Bassler, Kevin, Craig, Rocky, Schultze, Hartmut, Singhal, Sharad, Thomas, Ulas, Schultze, Joachim L
Published in bioRxiv (13.01.2019)
Published in bioRxiv (13.01.2019)
Get full text
Paper
Diagnostic value of blood gene expression-based classifiers as exemplified for acute myeloid leukemia
Warnat-Herresthal, Stefanie, Perrakis, Konstantinos, Taschler, Bernd, Becker, Matthias, Seep, Lea, Bassler, Kevin, Guenther, Patrick, Schulte-Schrepping, Jonas, Klee, Kathrin, Thomas, Ulas, Haferlach, Torsten, Mukherjee, Sach, Schultze, Joachim L
Published in bioRxiv (01.08.2018)
Published in bioRxiv (01.08.2018)
Get full text
Paper
Swarm Learning as a privacy-preserving machine learning approach for disease classification
Warnat-Herresthal, Stefanie, Schultze, Hartmut, Krishna Prasad Lingadahalli Shastry, Manamohan, Sathyanarayanan, Mukherjee, Saikat, Garg, Vishesh, Sarveswara, Ravi, Haendler, Kristian, Pickkers, Peter, N Ahmad Aziz, Ktena, Sofia, Siever, Christian, Kraut, Michael, Desai, Milind, Monet, Bruno, Saridaki, Maria, Charles Martin Siegel, Drews, Anna, Nuesch-Germano, Melanie, Theis, Heidi, Netea, Mihai G, Theis, Fabian J, Aschenbrenner, Anna C, Thomas, Ulas, Breteler, Monique Mb, Giamarellos-Bourboulis, Evangelos J, Kox, Matthijs, Becker, Matthias, Cheran, Sorin, Woodacre, Michael S, Eng Lim Goh, Schultze, Joachim L, German Covid-19 Omics Initiative (Decoi)
Published in bioRxiv (26.06.2020)
Published in bioRxiv (26.06.2020)
Get full text
Paper
Alterations of multiple alveolar macrophage states in chronic obstructive pulmonary disease
Bassler, Kevin, Fujii, Wataru, Kapellos, Theodore S, Horne, Arik, Reiz, Benedikt, Dudkin, Erika, Luecken, Malte, Reusch, Nico, Collins Osei-Sarpong, Warnat-Herresthal, Stefanie, Wagner, Allon, Bonaguro, Lorenzo, Guenther, Patrick, Pizarro, Carmen, Schreiber, Tina, Becker, Matthias, Haendler, Kristian, Wohnhaas, Christian T, Baumgartner, Florian, Koehler, Meike, Theis, Heidi, Kraut, Michael, Wadsworth, Mark H, Hughes, Travis K, Ferreira, Humberto J G, Schulte-Schrepping, Jonas, Hinkley, Emily, Kaltheuner, Ines H, Geyer, Matthias, Thiele, Christoph, Shalek, Alex K, Feisst, Andreas, Thomas, Daniel, Dickten, Henning, Beyer, Marc, Baum, Patrick, Nir Yosef, Aschenbrenner, Anna C, Thomas, Ulas, Hasenauer, Jan, Theis, Fabian J, Skowasch, Dirk, Schultze, Joachim L
Published in bioRxiv (30.05.2020)
Published in bioRxiv (30.05.2020)
Get full text
Paper
Cellular reprogramming of human monocytes is regulated by time-dependent IL4 signalling and NCOR2
Sander, Jil, Schmidt, Susanne V, Cirovic, Branko, Mcgovern, Naomi, Papantonopoulou, Olympia, Hardt, Anna-Lena, Aschenbrenner, Anna, Kreer, Christoph, Quast, Thomas, Xu, Alexander M, Schmidtleithner, Lisa M, Theis, Heidi, Thi Huong Lan Do, Hermi Rizal Bin Sumatoh, Mario Ar Lauterbach, Schulte-Schrepping, Jonas, Guenther, Patrick, Xue, Jia, Bassler, Kevin, Thomas, Ulas, Klee, Kathrin, Herresthal, Stefanie, Krebs, Wolfgang, Martin, Bianca, Latz, Eicke, Haendler, Kristian, Kraut, Michael, Kolanus, Waldemar, Beyer, Marc, Falk, Christine S, Wiegmann, Bettina, Burgdorf, Sven, Melosh, Nicholas A, Newell, Evan W, Ginhoux, Florent, Schlitzer, Andreas, Schultze, Joachim L
Published in bioRxiv (16.10.2017)
Published in bioRxiv (16.10.2017)
Get full text
Paper