Anatomical structures, cell types and biomarkers of the Human Reference Atlas
Börner, Katy, Teichmann, Sarah A., Quardokus, Ellen M., Gee, James C., Browne, Kristen, Osumi-Sutherland, David, Herr, Bruce W., Bueckle, Andreas, Paul, Hrishikesh, Haniffa, Muzlifah, Jardine, Laura, Bernard, Amy, Ding, Song-Lin, Miller, Jeremy A., Lin, Shin, Halushka, Marc K., Boppana, Avinash, Longacre, Teri A., Hickey, John, Lin, Yiing, Valerius, M. Todd, He, Yongqun, Pryhuber, Gloria, Sun, Xin, Jorgensen, Marda, Radtke, Andrea J., Wasserfall, Clive, Ginty, Fiona, Ho, Jonhan, Sunshine, Joel, Beuschel, Rebecca T., Brusko, Maigan, Lee, Sujin, Malhotra, Rajeev, Jain, Sanjay, Weber, Griffin
Published in Nature cell biology (01.11.2021)
Published in Nature cell biology (01.11.2021)
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Journal Article
Viv: multiscale visualization of high-resolution multiplexed bioimaging data on the web
Manz, Trevor, Gold, Ilan, Patterson, Nathan Heath, McCallum, Chuck, Keller, Mark S., Herr, Bruce W., Börner, Katy, Spraggins, Jeffrey M., Gehlenborg, Nils
Published in Nature methods (01.05.2022)
Published in Nature methods (01.05.2022)
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Journal Article
Database of NIH grants using machine-learned categories and graphical clustering
Talley, Edmund M, Newman, David, Mimno, David, Herr, Bruce W, Wallach, Hanna M, Burns, Gully A P C, Leenders, A G Miriam, McCallum, Andrew
Published in Nature methods (01.06.2011)
Published in Nature methods (01.06.2011)
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Journal Article
Anatomical structures, cell types, and biomarkers of the healthy human blood vasculature
Boppana, Avinash, Lee, Sujin, Malhotra, Rajeev, Halushka, Marc, Gustilo, Katherine S, Quardokus, Ellen M., Herr, Bruce W., Börner, Katy, Weber, Griffin M.
Published in Scientific data (19.07.2023)
Published in Scientific data (19.07.2023)
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Journal Article
Introducing the open biomedical map of science
Ginda, Michael, Herr, 2nd, Bruce W, Börner, Katy
Published in Frontiers in research metrics and analytics (2023)
Published in Frontiers in research metrics and analytics (2023)
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Journal Article
Specimen, biological structure, and spatial ontologies in support of a Human Reference Atlas
Herr, Bruce W., Hardi, Josef, Quardokus, Ellen M., Bueckle, Andreas, Chen, Lu, Wang, Fusheng, Caron, Anita R., Osumi-Sutherland, David, Musen, Mark A., Börner, Katy
Published in Scientific data (27.03.2023)
Published in Scientific data (27.03.2023)
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Journal Article
A biomedical open knowledge network harnesses the power of AI to understand deep human biology
Baranzini, Sergio E., Börner, Katy, Morris, John, Nelson, Charlotte A., Soman, Karthik, Schleimer, Erica, Keiser, Michael, Musen, Mark, Pearce, Roger, Reza, Tahsin, Smith, Brett, Herr, Bruce W., Oskotsky, Boris, Rizk‐Jackson, Angela, Rankin, Katherine P., Sanders, Stephan J., Bove, Riley, Rose, Peter W., Israni, Sharat, Huang, Sui
Published in The AI magazine (2022)
Published in The AI magazine (2022)
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Journal Article
Tissue registration and exploration user interfaces in support of a human reference atlas
Börner, Katy, Bueckle, Andreas, Herr, Bruce W., Cross, Leonard E., Quardokus, Ellen M., Record, Elizabeth G., Ju, Yingnan, Silverstein, Jonathan C., Browne, Kristen M., Jain, Sanjay, Wasserfall, Clive H., Jorgensen, Marda L., Spraggins, Jeffrey M., Patterson, N. Heath, Weber, Griffin M.
Published in Communications biology (13.12.2022)
Published in Communications biology (13.12.2022)
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Journal Article
" Then and Now ," Mapping the 25 Year Evolution and Impact of North American Vascular Biology Organization Science Through Publications of its Founding and Current Members
Galis, Zorina S, Herr, 2nd, Bruce W, Daptardar, Santoshmurti S, Sydykanova, Medina, Börner, Katy
Published in Frontiers in research metrics and analytics (2020)
Published in Frontiers in research metrics and analytics (2020)
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Journal Article
Functional Tissue Units in the Human Reference Atlas
Bidanta, Supriya, Börner, Katy, Herr, 2nd, Bruce W, Nagy, Marcell, Gustilo, Katherine S, Bajema, Rachel, Maier, Libby, Molontay, Roland, Weber, Griffin
Published in bioRxiv : the preprint server for biology (26.10.2023)
Published in bioRxiv : the preprint server for biology (26.10.2023)
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Journal Article
Designing Highly Flexible and Usable Cyberinfrastructures for Convergence
HERR, BRUCE W., HUANG, WEIXIA, PENUMARTHY, SHASHIKANT, BÖRNER, KATY
Published in Annals of the New York Academy of Sciences (01.12.2006)
Published in Annals of the New York Academy of Sciences (01.12.2006)
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Journal Article
Anatomical Structures, Cell Types, and Biomarkers Tables Plus 3D Reference Organs in Support of a Human Reference Atlas
Börner, Katy, Teichmann, Sarah A., Quardokus, Ellen M., Gee, James, Browne, Kristen, Osumi-Sutherland, David, Herr, Bruce W., Bueckle, Andreas, Paul, Hrishikesh, Haniffa, Muzlifah A., Jardine, Laura, Bernard, Amy, Ding, Song-Lin, Miller, Jeremy A., Lin, Shin, Halushka, Marc, Boppana, Avinash, Longacre, Teri A., Hickey, John, Lin, Yiing, Valerius, M. Todd, He, Yongqun, Pryhuber, Gloria, Sun, Xin, Jorgensen, Marda, Radtke, Andrea J., Wasserfall, Clive, Ginty, Fiona, Ho, Jonhan, Sunshine, Joel, Beuschel, Rebecca T., Brusko, Maigan, Lee, Sujin, Malhotra, Rajeev, Jain, Sanjay, Weber, Griffin
Published in Nature cell biology (01.11.2021)
Published in Nature cell biology (01.11.2021)
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Journal Article
A Topic Map of NIH Grants 2007
Bruce W. Herr, Gully A. P. C. Burns, David Newman, Edmund Talley
Published in Atlas of Knowledge (20.03.2015)
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Published in Atlas of Knowledge (20.03.2015)
Book Chapter
Movies and Actors: Mapping the Internet Movie Database
Herr, B.W., Weimao Ke, Hardy, E., Borner, K.
Published in 2007 11th International Conference Information Visualization (IV '07) (01.07.2007)
Published in 2007 11th International Conference Information Visualization (IV '07) (01.07.2007)
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Conference Proceeding
Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas Construction and Usage
Börner, Katy, Blood, Philip D, Silverstein, Jonathan C, Ruffalo, Matthew, Satija, Rahul, Teichmann, Sarah A, Pryhuber, Gloria, Misra, Ravi S, Purkerson, Jeffrey, Fan, Jean, Hickey, John W, Molla, Gesmira, Xu, Chuan, Zhang, Yun, Weber, Griffin, Jain, Yashvardhan, Qaurooni, Danial, Kong, Yongxin, Bueckle, Andreas, Herr, Bruce W
Published in bioRxiv (14.08.2024)
Published in bioRxiv (14.08.2024)
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Journal Article
Ontology-based modeling, integration, and analysis of heterogeneous clinical, pathological, and molecular kidney data for precision medicine
He, Yongqun Oliver, Barisoni, Laura, Rosenberg, Avi Z, Robinson, Peter N, Diehl, Alexander D, Chen, Yichao, Phuong, Jimmy P, Hansen, Jens, Herr, Bruce W, Börner, Katy, Schaub, Jennifer, Bonevich, Nikki, Arnous, Ghida, Boddapati, Saketh, Zheng, Jie, Alakwaa, Fadhl, Sarder, Pinaki, Duncan, William D, Liang, Chen, Valerius, M Todd, Jain, Sanjay, Iyengar, Ravi, Himmelfarb, Jonathan, Kretzler, Matthias
Published in bioRxiv (04.08.2024)
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Published in bioRxiv (04.08.2024)
Journal Article
The NIH Visual Browser: An Interactive Visualization of Biomedical Research
Herr, Bruce William, Talley, Edmund M., Burns, Gully A.P.C., Newman, David, LaRowe, Gavin
Published in 2009 13th International Conference Information Visualisation (01.07.2009)
Published in 2009 13th International Conference Information Visualisation (01.07.2009)
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Conference Proceeding
113 Years of Physical Review: Using Flow Maps to Show Temporal and Topical Citation Patterns
Herr, B.W., Duhon, R.J., Borner, K., Hardy, E.F., Penumarthy, S.
Published in 2008 12th International Conference Information Visualisation (01.07.2008)
Published in 2008 12th International Conference Information Visualisation (01.07.2008)
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Conference Proceeding
myAURA: Personalized health library for epilepsy management via knowledge graph sparsification and visualization
Correia, Rion Brattig, Rozum, Jordan C, Cross, Leonard, Felag, Jack, Gallant, Michael, Guo, Ziqi, Herr, Bruce W, Aehong Min, Rocha, Deborah Stungis, Wang, Xuan, Börner, Katy, Miller, Wendy, Rocha, Luis M
Published in arXiv.org (10.05.2024)
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Published in arXiv.org (10.05.2024)
Paper