IBEX: A versatile multiplex optical imaging approach for deep phenotyping and spatial analysis of cells in complex tissues
Radtke, Andrea J, Kandov, Evelyn, Lowekamp, Bradley, Speranza, Emily, Chu, Colin J, Gola, Anita, Thakur, Nishant, Shih, Rochelle, Yao, Li, Yaniv, Ziv Rafael, Beuschel, Rebecca T, Kabat, Juraj, Croteau, Joshua, Davis, Jeremy, Hernandez, Jonathan M, Germain, Ronald N
Published in Proceedings of the National Academy of Sciences - PNAS (29.12.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (29.12.2020)
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Multiregional single-cell dissection of tumor and immune cells reveals stable lock-and-key features in liver cancer
Ma, Lichun, Heinrich, Sophia, Wang, Limin, Keggenhoff, Friederike L., Khatib, Subreen, Forgues, Marshonna, Kelly, Michael, Hewitt, Stephen M., Saif, Areeba, Hernandez, Jonathan M., Mabry, Donna, Kloeckner, Roman, Greten, Tim F., Chaisaingmongkol, Jittiporn, Ruchirawat, Mathuros, Marquardt, Jens U., Wang, Xin Wei
Published in Nature communications (07.12.2022)
Published in Nature communications (07.12.2022)
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Quantitative Measures of Visceral Adiposity and Body Mass Index in Predicting Rectal Cancer Outcomes after Neoadjuvant Chemoradiation
Clark, Whalen, MD, Siegel, Erin M., PhD, Chen, Y. Ann, PhD, Zhao, Xiuhua, MS, Parsons, Colin M., MD, Hernandez, Jonathan M., MD, Weber, Jill, MPH, Thareja, Shalini, BA, Choi, Junsung, MD, Shibata, David, MD, FACS
Published in Journal of the American College of Surgeons (01.06.2013)
Published in Journal of the American College of Surgeons (01.06.2013)
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Patient demographics, clinicopathologic features, and outcomes in wild-type gastrointestinal stromal tumor: a national cohort analysis
Khan, Tahsin M., Verbus, Emily A., Rossi, Alexander J., Hernandez, Jonathan M., Davis, Jeremy L., Coakley, Brian A., Blakely, Andrew M.
Published in Scientific reports (06.04.2022)
Published in Scientific reports (06.04.2022)
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Characterization of alveolar soft part sarcoma using a large national database
Hagerty, Brendan L., Aversa, John, Diggs, Laurence P., Dominguez, Dana A., Ayabe, Reed I., Blakely, Andrew M., Davis, Jeremy L., Luu, Carrie, Hernandez, Jonathan M.
Published in Surgery (01.11.2020)
Published in Surgery (01.11.2020)
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Multivisceral Resection for Locally Advanced Gastric Cancer
Aversa, John G., Diggs, Laurence P., Hagerty, Brendan L., Dominguez, Dana A., Ituarte, Philip H. G., Hernandez, Jonathan M., Davis, Jeremy L., Blakely, Andrew M.
Published in Journal of gastrointestinal surgery (01.03.2021)
Published in Journal of gastrointestinal surgery (01.03.2021)
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Laparoendoscopic single site cholecystectomy: the first 100 patients
Hernandez, Jonathan M, Morton, Connor A, Ross, Sharona, Albrink, Michael, Rosemurgy, Alexander S
Published in The American surgeon (01.08.2009)
Published in The American surgeon (01.08.2009)
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Genome-wide profiling of transcription factor activity in primary liver cancer using single-cell ATAC sequencing
Craig, Amanda J., Silveira, Maruhen A. Datsch, Ma, Lichun, Revsine, Mahler, Wang, Limin, Heinrich, Sophia, Rae, Zachary, Ruchinskas, Allison, Dadkhah, Kimia, Do, Whitney, Behrens, Shay, Mehrabadi, Farid R., Dominguez, Dana A., Forgues, Marshonna, Budhu, Anuradha, Chaisaingmongkol, Jittiporn, Hernandez, Jonathan M., Davis, Jeremy L., Tran, Bao, Marquardt, Jens U., Ruchirawat, Mathuros, Kelly, Michael, Greten, Tim F., Wang, Xin W.
Published in Cell reports (Cambridge) (28.11.2023)
Published in Cell reports (Cambridge) (28.11.2023)
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Phase I/II study of PexaVec in combination with immune checkpoint inhibition in refractory metastatic colorectal cancer
Monge, Cecilia, Xie, Changqing, Myojin, Yuta, Coffman, Kelley, Hrones, Donna Mabry, Wang, Sophie, Hernandez, Jonathan M, Wood, Bradford J, Levy, Elliot B, Juburi, Israa, Hewitt, Stephen M, Kleiner, David E, Steinberg, Seth M, Figg, William D, Redd, Bernadette, Homan, Philip, Cam, Maggie, Ruf, Benjamin, Duffy, Austin G, Greten, Tim F
Published in Journal for immunotherapy of cancer (01.02.2023)
Published in Journal for immunotherapy of cancer (01.02.2023)
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Extrahepatic biliary neuroendocrine tumors: A national cancer database analysis
Dominguez, Dana A, Eade, Alyssa V, Aversa, John G, Hagerty, Brendan L, Blakely, Andrew M, Davis, Jeremy L, Melstrom, Laleh G, Hernandez, Jonathan M
Published in Heliyon (15.08.2024)
Published in Heliyon (15.08.2024)
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Complementary Strand MicroRNAs Mediate Acquisition of Metastatic Potential in Colonic Adenocarcinoma
Chen, Dung-Tsa, Hernandez, Jonathan M., Shibata, David, McCarthy, Susan M., Humphries, Leigh Ann, Clark, Whalen, Elahi, Abul, Gruidl, Mike, Coppola, Domenico, Yeatman, Timothy
Published in Journal of gastrointestinal surgery (01.05.2012)
Published in Journal of gastrointestinal surgery (01.05.2012)
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Protocol for isolation of signet ring cells from human gastric mucosa
Samaranayake, Sarah G., Gamble, Lauren A., Bowden, Cassidy, Green, Benjamin L., Gallanis, Amber F., Akbulut, Dilara, Shah, Niharika, Hernandez, Jonathan M., Davis, Jeremy L.
Published in STAR protocols (15.12.2023)
Published in STAR protocols (15.12.2023)
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Expression of the Antiapoptotic Protein Survivin in Colon Cancer
Hernandez, Jonathan M, Farma, Jeffrey M, Coppola, Domenico, Hakam, Ardeshir, Fulp, William J, Chen, Dung-Tsa, Siegel, Erin M, Yeatman, Timothy J, Shibata, David
Published in Clinical colorectal cancer (01.09.2011)
Published in Clinical colorectal cancer (01.09.2011)
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Patients' perceptions of laparoendoscopic single-site surgery: the cosmetic effect
Golkar, Farhaad C., M.D, Ross, Sharona B., M.D, Sperry, Steffanie, M.A, Vice, Michelle, Luberice, Kenneth, B.S, Donn, Natalie, B.S, Morton, Connor, B.S, Hernandez, Jonathan M., M.D, Rosemurgy, Alexander S., M.D
Published in The American journal of surgery (01.11.2012)
Published in The American journal of surgery (01.11.2012)
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DNA methylation profiling across the spectrum of HPV-associated anal squamous neoplasia
Hernandez, Jonathan M, Siegel, Erin M, Riggs, Bridget, Eschrich, Steven, Elahi, Abul, Qu, Xiaotao, Ajidahun, Abidemi, Berglund, Anders, Coppola, Domenico, Grady, William M, Giuliano, Anna R, Shibata, David
Published in PloS one (30.11.2012)
Published in PloS one (30.11.2012)
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Commensal-driven immune zonation of the liver promotes host defence
Gola, Anita, Dorrington, Michael G., Speranza, Emily, Sala, Claudia, Shih, Rochelle M., Radtke, Andrea J., Wong, Harikesh S., Baptista, Antonio P., Hernandez, Jonathan M., Castellani, Gastone, Fraser, Iain D. C., Germain, Ronald N.
Published in Nature (London) (07.01.2021)
Published in Nature (London) (07.01.2021)
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Metabolomic and BH3 profiling of esophageal cancers: novel assessment methods for precision therapy
Taylor Ripley, R, Surman, Deborah R, Diggs, Laurence P, Trepel, Jane B, Lee, Min-Jung, Ryan, Jeremy, Davis, Jeremy L, Steinberg, Seth M, Hernandez, Jonathan M, Hoang, Choung, Kenney, Cara M, Bond, Colleen D, Kunst, Tricia F, Letai, Anthony, Schrump, David S
Published in BMC gastroenterology (22.06.2018)
Published in BMC gastroenterology (22.06.2018)
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Single-cell atlas of tumor cell evolution in response to therapy in hepatocellular carcinoma and intrahepatic cholangiocarcinoma
Ma, Lichun, Wang, Limin, Khatib, Subreen A., Chang, Ching-Wen, Heinrich, Sophia, Dominguez, Dana A., Forgues, Marshonna, Candia, Julián, Hernandez, Maria O., Kelly, Michael, Zhao, Yongmei, Tran, Bao, Hernandez, Jonathan M., Davis, Jeremy L., Kleiner, David E., Wood, Bradford J., Greten, Tim F., Wang, Xin Wei
Published in Journal of hepatology (01.12.2021)
Published in Journal of hepatology (01.12.2021)
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Outcomes after transjugular intrahepatic portosystemic stent shunt: a “bridge” to nowhere
Toomey, Paul G., M.D, Ross, Sharona B., M.D, Golkar, Farhaad C., M.D, Hernandez, Jonathan M., M.D, Clark, Whalen C., M.D, Luberice, Kenneth, B.S, Alsina, Angel E., M.D, Rosemurgy, Alexander S., M.D
Published in The American journal of surgery (01.04.2013)
Published in The American journal of surgery (01.04.2013)
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