Facilitating bioinformatics reproducibility with QIIME 2 Provenance Replay
Keefe, Christopher R, Dillon, Matthew R, Gehret, Elizabeth, Herman, Chloe, Jewell, Mary, Wood, Colin V, Bolyen, Evan, Caporaso, J Gregory
Published in PLoS computational biology (01.11.2023)
Published in PLoS computational biology (01.11.2023)
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Journal Article
Environmental and structural factors associated with bacterial diversity in household dust across the Arizona-Sonora border
Benton, Lauren D, Lopez-Galvez, Nicolas, Herman, Chloe, Caporaso, J. Gregory, Cope, Emily K, Rosales, Cecilia, Gameros, Mercedes, Lothrop, Nathan, Martínez, Fernando D, Wright, Anne L, Carr, Tara F, Beamer, Paloma I
Published in Scientific reports (04.06.2024)
Published in Scientific reports (04.06.2024)
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Journal Article
Oligofructose improves small intestinal lipid-sensing mechanisms via alterations to the small intestinal microbiota
Weninger, Savanna N, Herman, Chloe, Meyer, Rachel K, Beauchemin, Eve T, Kangath, Archana, Lane, Adelina I, Martinez, Taylor M, Hasneen, Tahia, Jaramillo, Sierra A, Lindsey, Jason, Vedantam, Gayatri, Cai, Haijiang, Cope, Emily K, Caporaso, J Gregory, Duca, Frank A
Published in Microbiome (02.08.2023)
Published in Microbiome (02.08.2023)
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Journal Article
Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops
Dillon, Matthew R, Bolyen, Evan, Adamov, Anja, Belk, Aeriel, Borsom, Emily, Burcham, Zachary, Debelius, Justine W, Deel, Heather, Emmons, Alex, Estaki, Mehrbod, Herman, Chloe, Keefe, Christopher R, Morton, Jamie T, Oliveira, Renato R. M, Sanchez, Andrew, Simard, Anthony, Vázquez-Baeza, Yoshiki, Ziemski, Michal, Miwa, Hazuki E, Kerere, Terry A, Coote, Carline, Bonneau, Richard, Knight, Rob, Oliveira, Guilherme, Gopalasingam, Piraveen, Kaehler, Benjamin D, Cope, Emily K, Metcalf, Jessica L, Robeson II, Michael S, Bokulich, Nicholas A, Caporaso, J. Gregory
Published in PLoS computational biology (24.06.2021)
Published in PLoS computational biology (24.06.2021)
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Journal Article
Abstract PR005: Patients with endometrial cancer and benign gynecologic conditions exhibit unique vaginal and rectal microbiomes
Jimenez, Nicole R., Herman, Chloe, Laniewski, Pawel, Cope, Emily K., Mourad, Jamal, Mahnert, Nichole, Chase, Dana M., Caporaso, J. G., Herbst-Kralovetz, Melissa M.
Published in Clinical cancer research (01.03.2024)
Published in Clinical cancer research (01.03.2024)
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Journal Article
Predicting Neurodegenerative Disease Using Prepathology Gut Microbiota Composition: a Longitudinal Study in Mice Modeling Alzheimer's Disease Pathologies
Borsom, Emily M, Conn, Kathryn, Keefe, Christopher R, Herman, Chloe, Orsini, Gabrielle M, Hirsch, Allyson H, Palma Avila, Melanie, Testo, George, Jaramillo, Sierra A, Bolyen, Evan, Lee, Keehoon, Caporaso, J Gregory, Cope, Emily K
Published in Microbiology spectrum (06.03.2023)
Published in Microbiology spectrum (06.03.2023)
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Journal Article
Cohort-based learning for microbiome research community standards
Kelliher, Julia M, Rudolph, Marisa, Vangay, Pajau, Abbas, Arwa, Borton, Mikayla A, Davenport, Emily R, Davenport, Karen W, Erazo, Natalia G, Herman, Chloe, Karstens, Lisa, Kocurek, Brandon, Lutz, Holly L, Myers, Kevin S, Ockert, Ingrid, Rodriguez, Francisca E, Santistevan, Camille, Saunders, Jaclyn K, Smith, Montana L, Vogtmann, Emily, Windsor, Amanda, Wood-Charlson, Elisha M, Woodley, Lou, Eloe-Fadrosh, Emiley A
Published in Nature microbiology (01.05.2023)
Published in Nature microbiology (01.05.2023)
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Journal Article
Facilitating bootstrapped and rarefaction-based microbiome diversity analysis with q2-boots
Raspet, Isaiah, Gehret, Elizabeth, Herman, Chloe, Meilander, Jeff, Manley, Andrew, Simard, Anthony, Bolyen, Evan, Caporaso, J Gregory
Published in arXiv.org (10.08.2024)
Published in arXiv.org (10.08.2024)
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Journal Article
Environmental and Structural Factors Associated with Bacterial Diversity in Household Dust Across the Arizona-Sonora Border
Benton, Lauren, Lopez-Galvez, Nicolas, Herman, Chloe, Caporaso, Greg, Cope, Emily, Rosales, Cecilia, Gameros, Mercedes, Lothrop, Nathan, Martínez, Fernando, Wright, Anne, Carr, Tara, Beamer, Paloma
Published in Research square (29.09.2023)
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Published in Research square (29.09.2023)
Journal Article
Facilitating Bioinformatics Reproducibility
Keefe, Christopher R, Dillon, Matthew R, Herman, Chloe, Jewell, Mary, Wood, Colin V, Bolyen, Evan, Caporaso, J Gregory
Published in arXiv.org (18.05.2023)
Published in arXiv.org (18.05.2023)
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Journal Article
Assessing Engraftment Following Fecal Microbiota Transplant
Herman, Chloe, Barker, Bridget M, Bartelli, Thais F, Chandra, Vidhi, Krajmalnik-Brown, Rosa, Jewell, Mary, Li, Le, Liao, Chen, McAllister, Florencia, Nirmalkar, Khemlal, Xavier, Joao B, Caporaso, J Gregory
Published in arXiv.org (10.04.2024)
Published in arXiv.org (10.04.2024)
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Paper
Journal Article
Assessing Engraftment Following Fecal Microbiota Transplant
Herman, Chloe, Barker, Bridget M, Bartelli, Thais F, Chandra, Vidhi, Krajmalnik-Brown, Rosa, Jewell, Mary, Li, Le, Liao, Chen, McAllister, Florencia, Nirmalkar, Khemlal, Xavier, Joao B, Gregory Caporaso, J
Published in ArXiv.org (10.04.2024)
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Published in ArXiv.org (10.04.2024)
Journal Article
Assessing Engraftment Following Fecal Microbiota Transplant
Herman, Chloe, Barker, Bridget M, Bartelli, Thais F, Chandra, Vidhi, Krajmalnik-Brown, Rosa, Jewell, Mary, Li, Le, Liao, Chen, McAllister, Florencia, Nirmalkar, Khemlal, Xavier, Joao B, Gregory Caporaso, J
Published in ArXiv (10.04.2024)
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Published in ArXiv (10.04.2024)
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