The UNITE database for molecular identification of fungi – recent updates and future perspectives
Abarenkov, Kessy, Nilsson, R. Henrik, Larsson, Karl-Henrik, Alexander, Ian J., Eberhardt, Ursula, Erland, Susanne, Høiland, Klaus, Kjøller, Rasmus, Larsson, Ellen, Pennanen, Taina, Sen, Robin, Taylor, Andy F. S., Tedersoo, Leho, Ursing, Björn M., Vrålstad, Trude, Liimatainen, Kare, Peintner, Ursula, Kõljalg, Urmas
Published in The New phytologist (01.04.2010)
Published in The New phytologist (01.04.2010)
Get full text
Journal Article
Fungal community analysis by high-throughput sequencing of amplified markers – a user's guide
Lindahl, Björn D., Nilsson, R. Henrik, Tedersoo, Leho, Abarenkov, Kessy, Carlsen, Tor, Kjøller, Rasmus, Kõljalg, Urmas, Pennanen, Taina, Rosendahl, Søren, Stenlid, Jan, Kauserud, Håvard
Published in The New phytologist (01.07.2013)
Published in The New phytologist (01.07.2013)
Get full text
Journal Article
Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective
Nilsson, R Henrik, Ryberg, Martin, Kristiansson, Erik, Abarenkov, Kessy, Larsson, Karl-Henrik, Kõljalg, Urmas
Published in PloS one (20.12.2006)
Published in PloS one (20.12.2006)
Get full text
Journal Article
Unbiased probabilistic taxonomic classification for DNA barcoding
Somervuo, Panu, Koskela, Sonja, Pennanen, Juho, Henrik Nilsson, R, Ovaskainen, Otso
Published in Bioinformatics (Oxford, England) (01.10.2016)
Published in Bioinformatics (Oxford, England) (01.10.2016)
Get full text
Journal Article
Protax-fungi: a web-based tool for probabilistic taxonomic placement of fungal internal transcribed spacer sequences
Abarenkov, Kessy, Somervuo, Panu, Nilsson, R. Henrik, Kirk, Paul M., Huotari, Tea, Abrego, Nerea, Ovaskainen, Otso
Published in The New phytologist (01.10.2018)
Published in The New phytologist (01.10.2018)
Get full text
Journal Article
Unravelling soil fungal communities from different Mediterranean land-use backgrounds
Orgiazzi, Alberto, Lumini, Erica, Nilsson, R Henrik, Girlanda, Mariangela, Vizzini, Alfredo, Bonfante, Paola, Bianciotto, Valeria
Published in PloS one (20.04.2012)
Published in PloS one (20.04.2012)
Get full text
Journal Article
A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts
Nilsson, R. Henrik, Tedersoo, Leho, Ryberg, Martin, Kristiansson, Erik, Hartmann, Martin, Unterseher, Martin, Porter, Teresita M., Bengtsson-Palme, Johan, Walker, Donald M., Sousa, Filipe de, Gamper, Hannes Andres, Larsson, Ellen, Larsson, Karl-Henrik, Kõljalg, Urmas, Edgar, Robert C., Abarenkov, Kessy
Published in Microbes and Environments (2015)
Published in Microbes and Environments (2015)
Get full text
Journal Article
Novel soil-inhabiting clades fill gaps in the fungal tree of life
Tedersoo, Leho, Bahram, Mohammad, Puusepp, Rasmus, Nilsson, R Henrik, James, Timothy Y
Published in Microbiome (08.04.2017)
Published in Microbiome (08.04.2017)
Get full text
Journal Article
The Taxon Hypothesis Paradigm-On the Unambiguous Detection and Communication of Taxa
Kõljalg, Urmas, Nilsson, Henrik R, Schigel, Dmitry, Tedersoo, Leho, Larsson, Karl-Henrik, May, Tom W, Taylor, Andy F S, Jeppesen, Thomas Stjernegaard, Frøslev, Tobias Guldberg, Lindahl, Björn D, Põldmaa, Kadri, Saar, Irja, Suija, Ave, Savchenko, Anton, Yatsiuk, Iryna, Adojaan, Kristjan, Ivanov, Filipp, Piirmann, Timo, Pöhönen, Raivo, Zirk, Allan, Abarenkov, Kessy
Published in Microorganisms (Basel) (30.11.2020)
Published in Microorganisms (Basel) (30.11.2020)
Get full text
Journal Article
Microbiomes of the dust particles collected from the International Space Station and Spacecraft Assembly Facilities
Checinska, Aleksandra, Probst, Alexander J, Vaishampayan, Parag, White, James R, Kumar, Deepika, Stepanov, Victor G, Fox, George E, Nilsson, Henrik R, Pierson, Duane L, Perry, Jay, Venkateswaran, Kasthuri
Published in Microbiome (27.10.2015)
Published in Microbiome (27.10.2015)
Get full text
Journal Article
Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data
Bengtsson‐Palme, Johan, Ryberg, Martin, Hartmann, Martin, Branco, Sara, Wang, Zheng, Godhe, Anna, Wit, Pierre, Sánchez‐García, Marisol, Ebersberger, Ingo, Sousa, Filipe, Amend, Anthony, Jumpponen, Ari, Unterseher, Martin, Kristiansson, Erik, Abarenkov, Kessy, Bertrand, Yann J. K., Sanli, Kemal, Eriksson, K. Martin, Vik, Unni, Veldre, Vilmar, Nilsson, R. Henrik, Bunce, Michael
Published in Methods in ecology and evolution (01.10.2013)
Published in Methods in ecology and evolution (01.10.2013)
Get full text
Journal Article
Poorly known microbial taxa dominate the microbiome of permafrost thaw ponds
Wurzbacher, Christian, Nilsson, R Henrik, Rautio, Milla, Peura, Sari
Published in The ISME Journal (01.08.2017)
Published in The ISME Journal (01.08.2017)
Get full text
Journal Article
Assessing Biotic and Abiotic Interactions of Microorganisms in Amazonia through Co-Occurrence Networks and DNA Metabarcoding
Ritter, Camila Duarte, Forster, Dominik, Azevedo, Josue A. R., Antonelli, Alexandre, Nilsson, R. Henrik, Trujillo, Martha E., Dunthorn, Micah
Published in Microbial ecology (01.10.2021)
Published in Microbial ecology (01.10.2021)
Get full text
Journal Article
A subgroup of plant aquaporins facilitate the bi-directional diffusion of As(OH)3 and Sb(OH)3 across membranes
Bienert, Gerd P, Thorsen, Michael, Schüssler, Manuela D, Nilsson, Henrik R, Wagner, Annemarie, Tamás, Markus J, Jahn, Thomas P
Published in BMC biology (10.06.2008)
Published in BMC biology (10.06.2008)
Get full text
Journal Article
Nutrient enrichment increased species richness of leaf litter fungal assemblages in a tropical forest
Kerekes, Jennifer, Kaspari, Michael, Stevenson, Bradley, Nilsson, R. Henrik, Hartmann, Martin, Amend, Anthony, Bruns, Thomas D.
Published in Molecular ecology (01.05.2013)
Published in Molecular ecology (01.05.2013)
Get full text
Journal Article
Bacterial and fungal communities in a degraded ombrotrophic peatland undergoing natural and managed re-vegetation
Elliott, David R, Caporn, Simon J M, Nwaishi, Felix, Nilsson, R Henrik, Sen, Robin
Published in PloS one (13.05.2015)
Published in PloS one (13.05.2015)
Get full text
Journal Article