Integrated genomic analyses reveal frequent TERT aberrations in acral melanoma
Liang, Winnie S, Hendricks, William, Kiefer, Jeffrey, Schmidt, Jessica, Sekar, Shobana, Carpten, John, Craig, David W, Adkins, Jonathan, Cuyugan, Lori, Manojlovic, Zarko, Halperin, Rebecca F, Helland, Adrienne, Nasser, Sara, Legendre, Christophe, Hurley, Laurence H, Sivaprakasam, Karthigayini, Johnson, Douglas B, Crandall, Holly, Busam, Klaus J, Zismann, Victoria, Deluca, Valerie, Lee, Jeeyun, Sekulic, Aleksandar, Ariyan, Charlotte E, Sosman, Jeffrey, Trent, Jeffrey
Published in Genome research (01.04.2017)
Published in Genome research (01.04.2017)
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The interplay of mutagenesis and ecDNA shapes urothelial cancer evolution
Nguyen, Duy D, Hooper, William F, Liu, Weisi, Chu, Timothy R, Geiger, Heather, Shelton, Jennifer M, Shah, Minita, Goldstein, Zoe R, Winterkorn, Lara, Helland, Adrienne, Sigouros, Michael, Manohar, Jyothi, Moyer, Jenna, Al Assaad, Majd, Semaan, Alissa, Cohen, Sandra, Madorsky Rowdo, Florencia, Wilkes, David, Osman, Mohamed, Singh, Rahul R, Sboner, Andrea, Valentine, Henkel L, Abbosh, Phillip, Tagawa, Scott T, Nanus, David M, Nauseef, Jones T, Sternberg, Cora N, Molina, Ana M, Scherr, Douglas, Inghirami, Giorgio, Mosquera, Juan Miguel, Elemento, Olivier, Robine, Nicolas, Faltas, Bishoy M
Published in Nature (London) (09.10.2024)
Published in Nature (London) (09.10.2024)
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High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation
Gustafson, Jonas A, Gibson, Sophia B, Damaraju, Nikhita, Zalusky, Miranda Pg, Hoekzema, Kendra, Twesigomwe, David, Yang, Lei, Snead, Anthony A, Richmond, Phillip A, De Coster, Wouter, Olson, Nathan D, Guarracino, Andrea, Li, Qiuhui, Miller, Angela L, Goffena, Joy, Anderson, Zachery B, Storz, Sophie Hr, Ward, Sydney A, Sinha, Maisha, Gonzaga-Jauregui, Claudia, Clarke, Wayne E, Basile, Anna O, Corvelo, Andre, Reeves, Catherine E, Helland, Adrienne, Musunuri, Rajeeva Lochan, Revsine, Mahler, Patterson, Karynne E, Paschal, Cate, Zakarian, Christina, Goodwin, Sara, Jensen, Tanner D, Robb, Esther, McCombie, W Richard, Sedlazeck, Fritz J, Zook, Justin M, Montgomery, Stephen B, Garrison, Erik, Kolmogorov, Mikhail, Schatz, Michael C, McLaughlin, Jr, Richard N, Dashnow, Harriet, Zody, Michael C, Loose, Matthew, Jain, Miten, Eichler, Evan E, Miller, Danny E
Published in Genome research (02.10.2024)
Published in Genome research (02.10.2024)
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Abstract LB-176: Identification of mutations in histone modification genes in Hodgkin lymphoma
Liang, Winnie S., Salhia, Bodour, Helland, Adrienne, Sekar, Shobana, Garrido-Laguna, Ignacio, Fanale, Michelle, Oki, Yasuhiro, Westin, Jason R., Davis, R. Eric, Meric-Bernstam, Funda, Janku, Filip
Published in Cancer research (Chicago, Ill.) (01.08.2015)
Published in Cancer research (Chicago, Ill.) (01.08.2015)
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Identification of therapeutic targets in chordoma through comprehensive genomic and transcriptomic analyses
Liang, Winnie S, Dardis, Christopher, Helland, Adrienne, Sekar, Shobana, Adkins, Jonathan, Cuyugan, Lori, Enriquez, Daniel, Byron, Sara, Little, Andrew S
Published in Cold Spring Harbor molecular case studies (01.12.2018)
Published in Cold Spring Harbor molecular case studies (01.12.2018)
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Abstract 3389: Integrated genomic analyses reveal frequent TERT aberrations in acral melanoma
Liang, Winnie S., Hendricks, William, Kiefer, Jeffrey, Schmidt, Jessica, Sekar, Shobana, Carpten, John, Craig, David W., Adkins, Jonathan, Cuyugan, Lori, Manojlovic, Zarko, Halperin, Rebecca F., Helland, Adrienne, Nasser, Sara, Legendre, Christophe, Hurley, Laurence H., Sivaprakasam, Karthigayini, Johnson, Douglas B., Crandall, Holly, Busam, Klaus J., Zismann, Victoria, Luca, Valerie De, Lee, Jeeyun, Sekulic, Aleksandar, Ariyan, Charlotte E., Sosman, Jeffrey, Trent, Jeffrey
Published in Cancer research (Chicago, Ill.) (01.07.2017)
Published in Cancer research (Chicago, Ill.) (01.07.2017)
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Abstract 5709: Whole genome error-corrected sequencing for sensitive circulating tumor DNA cancer monitoring
Cheng, Alexandre P., Widman, Adam J., Arora, Anushri, Rusinek, Itai, Hooper, William F., Murray, Rebecca, Halmos, Daniel, Langanay, Theophile, Inghirami, Giorgio, Germer, Soren, Marton, Melissa, Helland, Adrienne, Furatero, Rob, McClintock, Jaime, Winterkorn, Lara, Steinsnyder, Zoe, Wang, Yohyoh, Rajagopalan, Srinivas, Alimohamed, Asrar I., Malbari, Murtaza S., Saxena, Ashish, Callahan, Margaret K., Frederick, Dennie T., Spain, Lavinia, Jaimovich, Ariel, Lipson, Doron, Turajlic, Samra, Zody, Michael C., Altorki, Nasser K., Wolchok, Jedd D., Postow, Michael A., Robine, Nicolas, Boland, Genevieve, Landau, Dan A.
Published in Cancer research (Chicago, Ill.) (04.04.2023)
Published in Cancer research (Chicago, Ill.) (04.04.2023)
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Identification of Initiating Trunk Mutations and Distinct Molecular Subtypes: An Interim Analysis of the Mmrf Commpass Study
Keats, Jonathan J, Speyer, Gil, Christophe, Legendre, Austin, Christofferson, Stephenson, Kristi, Kurdoglu, Ahmet, Russell, Megan, Jessica, Aldrich, Lori, Cuyugan, Adkins, Jonathan, McDonald, Jackie, Helland, Adrienne, Blanski, Alex, Hodges, Meghan, Rohrer, Dan, Jagannath, Sundar, Siegel, David, Vij, Ravi, Orloff, Gregory, Zimmerman, Todd, Niesvizky, Ruben, Liles, Darla, Fay, Joseph W., Wolf, Jeffrey L., Rifkin, Robert M., Gutierrez, Norma C, Toups, Jen, Derome, Mary, Liang, Winnie, Kim, Seunchan, Auclair, Daniel, Kidd, Pamela G., Jewell, Scott, Carpten, John David, Lonial, Sagar
Published in Blood (03.12.2015)
Published in Blood (03.12.2015)
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Interim Analysis of the Mmrf Commpass Trial: Identification of Novel Rearrangements Potentially Associated with Disease Initiation and Progression
Lonial, Sagar, Yellapantula, Venkata D, Liang, Winnie, Kurdoglu, Ahmet, Aldrich, Jessica, Legendre, Christophe M., Stephenson, Kristi, Adkins, Jonathan, McDonald, Jackie, Helland, Adrienne, Russell, Megan, Christofferson, Austin, Cuyugan, Lori, Rohrer, Dan, Blanski, Alex, Hodges, Meghan, CoMMpass Network, Mmrf, Derome, Mary, Auclair, Daniel, Kidd, Pamela G., Jewell, Scott, Craig, David, Carpten, John, Keats, Jonathan J.
Published in Blood (06.12.2014)
Published in Blood (06.12.2014)
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DeepSomatic: Accurate somatic small variant discovery for multiple sequencing technologies
Park, Jimin, Cook, Daniel E, Chang, Pi-Chuan, Kolesnikov, Alexey, Brambrink, Lucas, Mier, Juan Carlos, Gardner, Joshua, McNulty, Brandy, Sacco, Samuel, Keskus, Ayse, Bryant, Asher, Ahmad, Tanveer, Shetty, Jyoti, Zhao, Yongmei, Tran, Bao, Narzisi, Giuseppe, Helland, Adrienne, Yoo, Byunggil, Pushel, Irina, Lansdon, Lisa A, Bi, Chengpeng, Walter, Adam, Gibson, Margaret, Pastinen, Tomi, Farooqi, Midhat S, Robine, Nicolas, Miga, Karen H, Carroll, Andrew, Kolmogorov, Mikhail, Paten, Benedict, Shafin, Kishwar
Published in bioRxiv (19.08.2024)
Published in bioRxiv (19.08.2024)
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Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads
Keskus, Ayse, Bryant, Asher, Ahmad, Tanveer, Yoo, Byunggil, Aganezov, Sergey, Goretsky, Anton, Donmez, Ataberk, Lansdon, Lisa A, Rodriguez, Isabel, Park, Jimin, Liu, Yuelin, Cui, Xiwen, Gardner, Joshua, McNulty, Brandy, Sacco, Samuel, Shetty, Jyoti, Zhao, Yongmei, Tran, Bao, Narzisi, Giuseppe, Helland, Adrienne, Cook, Daniel E, Chang, Pi-Chuan, Kolesnikov, Alexey, Carroll, Andrew, Molloy, Erin K, Pushel, Irina, Guest, Erin, Pastinen, Tomi, Shafin, Kishwar, Miga, Karen H, Malikic, Salem, Day, Chi-Ping, Robine, Nicolas, Sahinalp, Cenk, Dean, Michael, Farooqi, Midhat S, Paten, Benedict, Kolmogorov, Mikhail
Published in medRxiv : the preprint server for health sciences (26.03.2024)
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Published in medRxiv : the preprint server for health sciences (26.03.2024)
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Nanopore sequencing of 1000 Genomes Project samples to build a comprehensive catalog of human genetic variation
Gustafson, Jonas A, Gibson, Sophia B, Damaraju, Nikhita, Zalusky, Miranda Pg, Hoekzema, Kendra, Twesigomwe, David, Yang, Lei, Snead, Anthony A, Richmond, Phillip A, De Coster, Wouter, Olson, Nathan D, Guarracino, Andrea, Li, Qiuhui, Miller, Angela L, Goffena, Joy, Anderson, Zachery, Storz, Sophie Hr, Ward, Sydney A, Sinha, Maisha, Gonzaga-Jauregui, Claudia, Clarke, Wayne E, Basile, Anna O, Corvelo, André, Reeves, Catherine, Helland, Adrienne, Musunuri, Rajeeva Lochan, Revsine, Mahler, Patterson, Karynne E, Paschal, Cate R, Zakarian, Christina, Goodwin, Sara, Jensen, Tanner D, Robb, Esther, McCombie, W Richard, Sedlazeck, Fritz J, Zook, Justin M, Montgomery, Stephen B, Garrison, Erik, Kolmogorov, Mikhail, Schatz, Michael C, McLaughlin, Jr, Richard N, Dashnow, Harriet, Zody, Michael C, Loose, Matt, Jain, Miten, Eichler, Evan E, Miller, Danny E
Published in medRxiv : the preprint server for health sciences (07.03.2024)
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Published in medRxiv : the preprint server for health sciences (07.03.2024)
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