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Automated inference of Boolean models from molecular interaction maps using CaSQ
Aghamiri, Sara Sadat, Singh, Vidisha, Naldi, Aurélien, Helikar, Tomáš, Soliman, Sylvain, Niarakis, Anna
Published in Bioinformatics (15.08.2020)
Published in Bioinformatics (15.08.2020)
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Emergent decision-making in biological signal transduction networks
Helikar, Tomáš, Konvalina, John, Heidel, Jack, Rogers, Jim A
Published in Proceedings of the National Academy of Sciences - PNAS (12.02.2008)
Published in Proceedings of the National Academy of Sciences - PNAS (12.02.2008)
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Logical Modeling and Dynamical Analysis of Cellular Networks
Abou-Jaoudé, Wassim, Traynard, Pauline, Monteiro, Pedro T., Saez-Rodriguez, Julio, Helikar, Tomáš, Thieffry, Denis, Chaouiya, Claudine
Published in Frontiers in genetics (31.05.2016)
Published in Frontiers in genetics (31.05.2016)
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The Cell Collective: Toward an open and collaborative approach to systems biology
Helikar, Tomáš, Kowal, Bryan, McClenathan, Sean, Bruckner, Mitchell, Rowley, Thaine, Madrahimov, Alex, Wicks, Ben, Shrestha, Manish, Limbu, Kahani, Rogers, Jim A
Published in BMC systems biology (07.08.2012)
Published in BMC systems biology (07.08.2012)
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Integrative network analyses of transcriptomics data reveal potential drug targets for acute radiation syndrome
Moore, Robert, Puniya, Bhanwar Lal, Powers, Robert, Guda, Chittibabu, Bayles, Kenneth W., Berkowitz, David B., Helikar, Tomáš
Published in Scientific reports (10.03.2021)
Published in Scientific reports (10.03.2021)
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Identification of potential tissue-specific cancer biomarkers and development of cancer versus normal genomic classifiers
Mohammed, Akram, Biegert, Greyson, Adamec, Jiri, Helikar, Tomáš
Published in Oncotarget (17.10.2017)
Published in Oncotarget (17.10.2017)
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COMO: a pipeline for multi-omics data integration in metabolic modeling and drug discovery
Bessell, Brandt, Loecker, Josh, Zhao, Zhongyuan, Aghamiri, Sara Sadat, Mohanty, Sabyasachi, Amin, Rada, Helikar, Tomáš, Puniya, Bhanwar Lal
Published in Briefings in bioinformatics (22.09.2023)
Published in Briefings in bioinformatics (22.09.2023)
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A Review of Radiation-Induced Alterations of Multi-Omic Profiles, Radiation Injury Biomarkers, and Countermeasures
Shakyawar, Sushil K, Mishra, Nitish K, Vellichirammal, Neetha N, Cary, Lynnette, Helikar, Tomáš, Powers, Robert, Oberley-Deegan, Rebecca E, Berkowitz, David B, Bayles, Kenneth W, Singh, Vijay K, Guda, Chittibabu
Published in Radiation research (01.01.2023)
Published in Radiation research (01.01.2023)
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A Mechanistic Computational Model Reveals That Plasticity of CD4+ T Cell Differentiation Is a Function of Cytokine Composition and Dosage
Puniya, Bhanwar Lal, Todd, Robert G., Mohammed, Akram, Brown, Deborah M., Barberis, Matteo, Helikar, Tomáš
Published in Frontiers in physiology (02.08.2018)
Published in Frontiers in physiology (02.08.2018)
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A Comprehensive, Multi-Scale Dynamical Model of ErbB Receptor Signal Transduction in Human Mammary Epithelial Cells
Helikar, Tomáš, Kochi, Naomi, Kowal, Bryan, Dimri, Manjari, Naramura, Mayumi, Raja, Srikumar M., Band, Vimla, Band, Hamid, Rogers, Jim A.
Published in PloS one (18.04.2013)
Published in PloS one (18.04.2013)
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