Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry
Collins, Ben C., Hunter, Christie L., Liu, Yansheng, Schilling, Birgit, Rosenberger, George, Bader, Samuel L., Chan, Daniel W., Gibson, Bradford W., Gingras, Anne-Claude, Held, Jason M., Hirayama-Kurogi, Mio, Hou, Guixue, Krisp, Christoph, Larsen, Brett, Lin, Liang, Liu, Siqi, Molloy, Mark P., Moritz, Robert L., Ohtsuki, Sumio, Schlapbach, Ralph, Selevsek, Nathalie, Thomas, Stefani N., Tzeng, Shin-Cheng, Zhang, Hui, Aebersold, Ruedi
Published in Nature communications (21.08.2017)
Published in Nature communications (21.08.2017)
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Label-free quantitative proteomics of the lysine acetylome in mitochondria identifies substrates of SIRT3 in metabolic pathways
Rardin, Matthew J., Newman, John C., Held, Jason M., Cusack, Michael P., Sorensen, Dylan J., Li, Biao, Schilling, Birgit, Mooney, Sean D., Kahn, C. Ronald, Verdin, Eric, Gibson, Bradford W.
Published in Proceedings of the National Academy of Sciences - PNAS (16.04.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (16.04.2013)
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ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
Mooradian, Arshag D, van der Post, Sjoerd, Naegle, Kristen M, Held, Jason M
Published in PLoS computational biology (01.03.2020)
Published in PLoS computational biology (01.03.2020)
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Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma
Rudnick, Paul A, Niles, Richard K, Vega-Montoto, Lorenzo J, Mani, D R, Abbatiello, Susan E, Tegeler, Tony J, Tempst, Paul, Gibson, Bradford W, Cusack, Michael P, Buck, Charles, Hall, Steven C, Neubert, Thomas A, Mesri, Mehdi, Tabb, David L, Johansen, Eric B, Ransohoff, David, Addona, Terri A, Bunk, David M, Hiltke, Tara, Zhao, Lei, Schilling, Birgit, Regnier, Fred E, Rodriguez, Henry, Liebler, Daniel C, Wahlander, Åsa, Ham, Amy-Joan L, Dodder, Nathan G, Spiegelman, Clifford H, Carr, Steven A, Li, Jing, Allen, Simon, Variyath, Asokan M, Waldemarson, Sofia, Smith, Derek, Jackson, Angela, Borchers, Christoph H, Anderson, N Leigh, Wang, Mu, Keshishian, Hasmik, Fisher, Susan J, Held, Jason M, Pulsipher, Trenton C, Blackman, Ronald K, Skates, Steven J, Whiteaker, Jeffrey R, Zimmerman, Lisa J, Cardasis, Helene L, Kinsinger, Christopher R, Paulovich, Amanda G
Published in Nature biotechnology (01.07.2009)
Published in Nature biotechnology (01.07.2009)
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Spatial and temporal alterations in protein structure by EGF regulate cryptic cysteine oxidation
Behring, Jessica B, van der Post, Sjoerd, Mooradian, Arshag D, Egan, Matthew J, Zimmerman, Maxwell I, Clements, Jenna L, Bowman, Gregory R, Held, Jason M
Published in Science signaling (21.01.2020)
Published in Science signaling (21.01.2020)
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The TRIM4 E3 ubiquitin ligase degrades TPL2 and is modulated by oncogenic KRAS
Bansod, Sapana, Dodhiawala, Paarth B., Geng, Yutong, Bulle, Ashenafi, Liu, Peng, Li, Lin, Townsend, Reid, Grierson, Patrick M., Held, Jason M., Adhikari, Hema, Lim, Kian-Huat
Published in Cell reports (Cambridge) (24.09.2024)
Published in Cell reports (Cambridge) (24.09.2024)
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Multiplexed, Scheduled, High-Resolution Parallel Reaction Monitoring on a Full Scan QqTOF Instrument with Integrated Data-Dependent and Targeted Mass Spectrometric Workflows
Schilling, Birgit, MacLean, Brendan, Held, Jason M, Sahu, Alexandria K, Rardin, Matthew J, Sorensen, Dylan J, Peters, Theodore, Wolfe, Alan J, Hunter, Christie L, MacCoss, Michael J, Gibson, Bradford W
Published in Analytical chemistry (Washington) (20.10.2015)
Published in Analytical chemistry (Washington) (20.10.2015)
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Large-Scale Interlaboratory Study to Develop, Analytically Validate and Apply Highly Multiplexed, Quantitative Peptide Assays to Measure Cancer-Relevant Proteins in Plasma
Abbatiello, Susan E., Schilling, Birgit, Mani, D.R., Zimmerman, Lisa J., Hall, Steven C., MacLean, Brendan, Albertolle, Matthew, Allen, Simon, Burgess, Michael, Cusack, Michael P., Gosh, Mousumi, Hedrick, Victoria, Held, Jason M., Inerowicz, H. Dorota, Jackson, Angela, Keshishian, Hasmik, Kinsinger, Christopher R., Lyssand, John, Makowski, Lee, Mesri, Mehdi, Rodriguez, Henry, Rudnick, Paul, Sadowski, Pawel, Sedransk, Nell, Shaddox, Kent, Skates, Stephen J., Kuhn, Eric, Smith, Derek, Whiteaker, Jeffery R., Whitwell, Corbin, Zhang, Shucha, Borchers, Christoph H., Fisher, Susan J., Gibson, Bradford W., Liebler, Daniel C., MacCoss, Michael J., Neubert, Thomas A., Paulovich, Amanda G., Regnier, Fred E., Tempst, Paul, Carr, Steven A.
Published in Molecular & cellular proteomics (01.09.2015)
Published in Molecular & cellular proteomics (01.09.2015)
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Combined KRAS-MAPK pathway inhibitors and HER2-directed drug conjugate is efficacious in pancreatic cancer
Bulle, Ashenafi, Liu, Peng, Seehra, Kuljeet, Bansod, Sapana, Chen, Yali, Zahra, Kiran, Somani, Vikas, Khawar, Iftikhar Ali, Chen, Hung-Po, Dodhiawala, Paarth B., Li, Lin, Geng, Yutong, Mo, Chia-Kuei, Mahsl, Jay, Ding, Li, Govindan, Ramaswamy, Davies, Sherri, Mudd, Jacqueline, Hawkins, William G., Fields, Ryan C., DeNardo, David G., Knoerzer, Deborah, Held, Jason M., Grierson, Patrick M., Wang-Gillam, Andrea, Ruzinova, Marianna B., Lim, Kian-Huat
Published in Nature communications (20.03.2024)
Published in Nature communications (20.03.2024)
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ErbB2 trafficking and degradation associated with K48 and K63 polyubiquitination
Marx, Corina, Held, Jason M, Gibson, Bradford W, Benz, Christopher C
Published in Cancer research (Chicago, Ill.) (01.05.2010)
Published in Cancer research (Chicago, Ill.) (01.05.2010)
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Epigenetic regulation during cancer transitions across 11 tumour types
Terekhanova, Nadezhda V., Karpova, Alla, Liang, Wen-Wei, Strzalkowski, Alexander, Chen, Siqi, Li, Yize, Southard-Smith, Austin N., Iglesia, Michael D., Wendl, Michael C., Jayasinghe, Reyka G., Liu, Jingxian, Song, Yizhe, Cao, Song, Houston, Andrew, Liu, Xiuting, Wyczalkowski, Matthew A., Lu, Rita Jui-Hsien, Caravan, Wagma, Shinkle, Andrew, Naser Al Deen, Nataly, Herndon, John M., Mudd, Jacqueline, Ma, Cong, Sarkar, Hirak, Sato, Kazuhito, Ibrahim, Omar M., Mo, Chia-Kuei, Chasnoff, Sara E., Porta-Pardo, Eduard, Held, Jason M., Pachynski, Russell, Schwarz, Julie K., Gillanders, William E., Kim, Albert H., Vij, Ravi, DiPersio, John F., Puram, Sidharth V., Chheda, Milan G., Fuh, Katherine C., DeNardo, David G., Fields, Ryan C., Chen, Feng, Raphael, Benjamin J., Ding, Li
Published in Nature (London) (09.11.2023)
Published in Nature (London) (09.11.2023)
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Proteogenomic integration reveals therapeutic targets in breast cancer xenografts
Huang, Kuan-lin, Li, Shunqiang, Mertins, Philipp, Cao, Song, Gunawardena, Harsha P., Ruggles, Kelly V., Mani, D. R., Clauser, Karl R., Tanioka, Maki, Usary, Jerry, Kavuri, Shyam M., Xie, Ling, Yoon, Christopher, Qiao, Jana W, Wrobel, John, Wyczalkowski, Matthew A., Erdmann-Gilmore, Petra, Snider, Jacqueline E., Hoog, Jeremy, Singh, Purba, Niu, Beifang, Guo, Zhanfang, Sun, Sam Qiancheng, Sanati, Souzan, Kawaler, Emily, Wang, Xuya, Scott, Adam, Ye, Kai, McLellan, Michael D., Wendl, Michael C., Malovannaya, Anna, Held, Jason M., Gillette, Michael A., Fenyö, David, Kinsinger, Christopher R., Mesri, Mehdi, Rodriguez, Henry, Davies, Sherri R., Perou, Charles M., Ma, Cynthia, Reid Townsend, R., Chen, Xian, Carr, Steven A., Ellis, Matthew J., Ding, Li
Published in Nature communications (28.03.2017)
Published in Nature communications (28.03.2017)
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Malic Enzyme 1 Absence in Synovial Sarcoma Shifts Antioxidant System Dependence and Increases Sensitivity to Ferroptosis Induction with ACXT-3102
Brashears, Caitlyn B, Prudner, Bethany C, Rathore, Richa, Caldwell, Katharine E, Dehner, Carina A, Buchanan, Jane L, Lange, Sara E S, Poulin, Neal, Sehn, Jennifer K, Roszik, Jason, Spitzer, Dirk, Jones, Kevin B, O'Keefe, Regis, Nielsen, Torsten O, Taylor, Eric B, Held, Jason M, Hawkins, William, Van Tine, Brian A
Published in Clinical cancer research (15.08.2022)
Published in Clinical cancer research (15.08.2022)
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Proteins in Tumor-Derived Plasma Extracellular Vesicles Indicate Tumor Origin
Barlin, Meltem, Erdmann-Gilmore, Petra, Mudd, Jacqueline L., Zhang, Qiang, Seymour, Robert W., Guo, Zhanfang, Miessner, Julia R., Goedegebuure, S. Peter, Bi, Ye, Osorio, Omar A., Alexander-Brett, Jennifer, Li, Shunqiang, Ma, Cynthia X., Fields, Ryan C., Townsend, R. Reid, Held, Jason M.
Published in Molecular & cellular proteomics (01.01.2023)
Published in Molecular & cellular proteomics (01.01.2023)
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Mass Spectrometry-Based Proteomics Reveals Potential Roles of NEK9 and MAP2K4 in Resistance to PI3K Inhibition in Triple-Negative Breast Cancers
Mundt, Filip, Rajput, Sandeep, Li, Shunqiang, Ruggles, Kelly V, Mooradian, Arshag D, Mertins, Philipp, Gillette, Michael A, Krug, Karsten, Guo, Zhanfang, Hoog, Jeremy, Erdmann-Gilmore, Petra, Primeau, Tina, Huang, Shixia, Edwards, Dean P, Wang, Xiaowei, Wang, Xuya, Kawaler, Emily, Mani, D R, Clauser, Karl R, Gao, Feng, Luo, Jingqin, Davies, Sherri R, Johnson, Gary L, Huang, Kuan-Lin, Yoon, Christopher J, Ding, Li, Fenyö, David, Ellis, Matthew J, Townsend, R Reid, Held, Jason M, Carr, Steven A, Ma, Cynthia X
Published in Cancer research (Chicago, Ill.) (15.05.2018)
Published in Cancer research (Chicago, Ill.) (15.05.2018)
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N-acylethanolamine signalling mediates the effect of diet on lifespan in Caenorhabditis elegans
Lucanic, Mark, Held, Jason M., Vantipalli, Maithili C., Klang, Ida M., Graham, Jill B., Gibson, Bradford W., Lithgow, Gordon J., Gill, Matthew S.
Published in Nature (London) (12.05.2011)
Published in Nature (London) (12.05.2011)
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