The impact of site-specific digital histology signatures on deep learning model accuracy and bias
Howard, Frederick M, Dolezal, James, Kochanny, Sara, Schulte, Jefree, Chen, Heather, Heij, Lara, Huo, Dezheng, Nanda, Rita, Olopade, Olufunmilayo I, Kather, Jakob N, Cipriani, Nicole, Grossman, Robert L, Pearson, Alexander T
Published in Nature communications (20.07.2021)
Published in Nature communications (20.07.2021)
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Clinical-Grade Detection of Microsatellite Instability in Colorectal Tumors by Deep Learning
Echle, Amelie, Grabsch, Heike Irmgard, Quirke, Philip, van den Brandt, Piet A., West, Nicholas P., Hutchins, Gordon G.A., Heij, Lara R., Tan, Xiuxiang, Richman, Susan D., Krause, Jeremias, Alwers, Elizabeth, Jenniskens, Josien, Offermans, Kelly, Gray, Richard, Brenner, Hermann, Chang-Claude, Jenny, Trautwein, Christian, Pearson, Alexander T., Boor, Peter, Luedde, Tom, Gaisa, Nadine Therese, Hoffmeister, Michael, Kather, Jakob Nikolas
Published in Gastroenterology (New York, N.Y. 1943) (01.10.2020)
Published in Gastroenterology (New York, N.Y. 1943) (01.10.2020)
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Nerve fibers in the tumor microenvironment in neurotropic cancer-pancreatic cancer and cholangiocarcinoma
Tan, Xiuxiang, Sivakumar, Shivan, Bednarsch, Jan, Wiltberger, Georg, Kather, Jakob Nikolas, Niehues, Jan, de Vos-Geelen, Judith, Valkenburg-van Iersel, Liselot, Kintsler, Svetlana, Roeth, Anjali, Hao, Guangshan, Lang, Sven, Coolsen, Mariëlle E, den Dulk, Marcel, Aberle, Merel R, Koolen, Jarne, Gaisa, Nadine T, Olde Damink, Steven W M, Neumann, Ulf P, Heij, Lara R
Published in Oncogene (04.02.2021)
Published in Oncogene (04.02.2021)
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Deep learning identifies inflamed fat as a risk factor for lymph node metastasis in early colorectal cancer
Brockmoeller, Scarlet, Echle, Amelie, Ghaffari Laleh, Narmin, Eiholm, Susanne, Malmstrøm, Marie Louise, Plato Kuhlmann, Tine, Levic, Katarina, Grabsch, Heike Irmgard, West, Nicholas P, Saldanha, Oliver Lester, Kouvidi, Katerina, Bono, Aurora, Heij, Lara R, Brinker, Titus J, Gögenür, Ismayil, Quirke, Philip, Kather, Jakob Nikolas
Published in The Journal of pathology (01.03.2022)
Published in The Journal of pathology (01.03.2022)
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Weakly supervised annotation‐free cancer detection and prediction of genotype in routine histopathology
Schrammen, Peter Leonard, Ghaffari Laleh, Narmin, Echle, Amelie, Truhn, Daniel, Schulz, Volkmar, Brinker, Titus J, Brenner, Hermann, Chang‐Claude, Jenny, Alwers, Elizabeth, Brobeil, Alexander, Kloor, Matthias, Heij, Lara R, Jäger, Dirk, Trautwein, Christian, Grabsch, Heike I, Quirke, Philip, West, Nicholas P, Hoffmeister, Michael, Kather, Jakob Nikolas
Published in The Journal of pathology (01.01.2022)
Published in The Journal of pathology (01.01.2022)
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The prognostic value of neutrophil-to-lymphocyte ratio in cholangiocarcinoma: a systematic review and meta-analysis
Liu, Dong, Heij, Lara R, Czigany, Zoltan, Dahl, Edgar, Dulk, Marcel den, Lang, Sven A, Ulmer, Tom F, Neumann, Ulf P, Bednarsch, Jan
Published in Scientific reports (25.07.2022)
Published in Scientific reports (25.07.2022)
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Bacterial bile duct colonization in perihilar cholangiocarcinoma and its clinical significance
Bednarsch, Jan, Czigany, Zoltan, Heij, Lara Rosaline, Luedde, Tom, van Dam, Ronald, Lang, Sven Arke, Ulmer, Tom Florian, Hornef, Mathias Walter, Neumann, Ulf Peter
Published in Scientific reports (03.02.2021)
Published in Scientific reports (03.02.2021)
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Various myosteatosis selection criteria and their value in the assessment of short- and long-term outcomes following liver transplantation
Meister, Franziska Alexandra, Bednarsch, Jan, Amygdalos, Iakovos, Boecker, Joerg, Strnad, Pavel, Bruners, Philipp, Lang, Sven Arke, Ulmer, Tom Florian, Heij, Lara, Santana, Daniel Antonio Morales, Liu, Wen-Jia, Lurje, Georg, Neumann, Ulf Peter, Czigany, Zoltan
Published in Scientific reports (28.06.2021)
Published in Scientific reports (28.06.2021)
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Chorioamnionitis induces hepatic inflammation and time-dependent changes of the enterohepatic circulation in the ovine fetus
Heymans, Cathelijne, den Dulk, Marcel, Lenaerts, Kaatje, Heij, Lara R, de Lange, Ilse H, Hadfoune, Mhamed, van Heugten, Chantal, Kramer, Boris W, Jobe, Alan H, Saito, Masatoshi, Kemp, Matthew W, Wolfs, Tim G A M, van Gemert, Wim G
Published in Scientific reports (14.05.2021)
Published in Scientific reports (14.05.2021)
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Tumor ratio of unsaturated to saturated sulfatide species is associated with disease-free survival in intrahepatic cholangiocarcinoma
Huizing, Lennart, Chen, Lin, Roeth, Anjali A., Heij, Lara R., Flinders, Bryn, Bouwense, Stefan A. W., Balluff, Benjamin, Neumann, Ulf P., Heeren, Ron M. A., Olde Damink, Steven W. M., Vreeken, Rob J., Schaap, Frank G.
Published in Cellular oncology (Dordrecht) (01.06.2023)
Published in Cellular oncology (Dordrecht) (01.06.2023)
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Deep learning-based phenotyping reclassifies combined hepatocellular-cholangiocarcinoma
Calderaro, Julien, Ghaffari Laleh, Narmin, Zeng, Qinghe, Maille, Pascale, Favre, Loetitia, Pujals, Anaïs, Klein, Christophe, Bazille, Céline, Heij, Lara R, Uguen, Arnaud, Luedde, Tom, Di Tommaso, Luca, Beaufrère, Aurélie, Chatain, Augustin, Gastineau, Delphine, Nguyen, Cong Trung, Nguyen-Canh, Hiep, Thi, Khuyen Nguyen, Gnemmi, Viviane, Graham, Rondell P, Charlotte, Frédéric, Wendum, Dominique, Vij, Mukul, Allende, Daniela S, Aucejo, Federico, Diaz, Alba, Rivière, Benjamin, Herrero, Astrid, Evert, Katja, Calvisi, Diego Francesco, Augustin, Jérémy, Leow, Wei Qiang, Leung, Howard Ho Wai, Boleslawski, Emmanuel, Rela, Mohamed, François, Arnaud, Cha, Anthony Wing-Hung, Forner, Alejandro, Reig, Maria, Allaire, Manon, Scatton, Olivier, Chatelain, Denis, Boulagnon-Rombi, Camille, Sturm, Nathalie, Menahem, Benjamin, Frouin, Eric, Tougeron, David, Tournigand, Christophe, Kempf, Emmanuelle, Kim, Haeryoung, Ningarhari, Massih, Michalak-Provost, Sophie, Gopal, Purva, Brustia, Raffaele, Vibert, Eric, Schulze, Kornelius, Rüther, Darius F, Weidemann, Sören A, Rhaiem, Rami, Pawlotsky, Jean-Michel, Zhang, Xuchen, Luciani, Alain, Mulé, Sébastien, Laurent, Alexis, Amaddeo, Giuliana, Regnault, Hélène, De Martin, Eleonora, Sempoux, Christine, Navale, Pooja, Westerhoff, Maria, Lo, Regina Cheuk-Lam, Bednarsch, Jan, Gouw, Annette, Guettier, Catherine, Lequoy, Marie, Harada, Kenichi, Sripongpun, Pimsiri, Wetwittayaklang, Poowadon, Loménie, Nicolas, Tantipisit, Jarukit, Kaewdech, Apichat, Shen, Jeanne, Paradis, Valérie, Caruso, Stefano, Kather, Jakob Nikolas
Published in Nature communications (14.12.2023)
Published in Nature communications (14.12.2023)
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Osteopenia is associated with inferior survival in patients undergoing partial hepatectomy for hepatocellular carcinoma
Meister, Franziska Alexandra, Verhoeven, Suekran, Mantas, Anna, Liu, Wen-Jia, Jiang, Decan, Heij, Lara, Heise, Daniel, Bruners, Philipp, Lang, Sven Arke, Ulmer, Tom Florian, Neumann, Ulf Peter, Bednarsch, Jan, Czigany, Zoltan
Published in Scientific reports (31.10.2022)
Published in Scientific reports (31.10.2022)
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The Value of Platelet-to-Lymphocyte Ratio as a Prognostic Marker in Cholangiocarcinoma: A Systematic Review and Meta-Analysis
Liu, Dong, Czigany, Zoltan, Heij, Lara R, Bouwense, Stefan A W, van Dam, Ronald, Lang, Sven A, Ulmer, Tom F, Neumann, Ulf P, Bednarsch, Jan
Published in Cancers (16.01.2022)
Published in Cancers (16.01.2022)
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Increased risk of esophageal squamous cell carcinoma in patients with squamous dysplasia: a nationwide cohort study in the Netherlands
van Tilburg, Laurelle, Spaander, Manon C W, Bruno, Marco J, Oudijk, Lindsey, Heij, Lara R, Doukas, Michail, Koch, Arjun D
Published in Diseases of the esophagus (30.11.2023)
Published in Diseases of the esophagus (30.11.2023)
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Perioperative rifaximin is not associated with enhanced functional and volumetric recovery after major liver resection
Bednarsch, Jan, Czigany, Zoltan, Loosen, Sven H., Heij, Lara, Ruckgaber, Lorenz, Maes, Henning, Krause, Jan-Pit, Reen, Matthias, Toteva, Beata, Vosdellen, Theresa, Bruners, Philipp, Lang, Sven Arke, Ulmer, Tom Florian, Roderburg, Christoph, Luedde, Tom, Neumann, Ulf Peter
Published in Scientific reports (09.09.2021)
Published in Scientific reports (09.09.2021)
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Predicting Mutational Status of Driver and Suppressor Genes Directly from Histopathology With Deep Learning: A Systematic Study Across 23 Solid Tumor Types
Loeffler, Chiara Maria Lavinia, Gaisa, Nadine T, Muti, Hannah Sophie, van Treeck, Marko, Echle, Amelie, Ghaffari Laleh, Narmin, Trautwein, Christian, Heij, Lara R, Grabsch, Heike I, Ortiz Bruechle, Nadina, Kather, Jakob Nikolas
Published in Frontiers in genetics (16.02.2022)
Published in Frontiers in genetics (16.02.2022)
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Deletion of mTOR in liver epithelial cells enhances hepatic metastasis of colon cancer
Jiao, Long, Eickhoff, Roman, Egners, Antje, Jumpertz, Sandra, Roth, Johanna, Erdem, Merve, Kroh, Andreas, Duimel, Hans, López‐Iglesias, Carmen, Caro, Pilar, Heij, Lara R, Schmeding, Maximilian, Meierhofer, David, Neumann, Ulf P, Cramer, Thorsten
Published in The Journal of pathology (01.11.2021)
Published in The Journal of pathology (01.11.2021)
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Uncovering Novel Roles of miR-122 in the Pathophysiology of the Liver: Potential Interaction with NRF1 and E2F4 Signaling
Paluschinski, Martha, Schira-Heinen, Jessica, Pellegrino, Rossella, Heij, Lara R, Bednarsch, Jan, Neumann, Ulf P, Longerich, Thomas, Stuehler, Kai, Luedde, Tom, Castoldi, Mirco
Published in Cancers (01.08.2023)
Published in Cancers (01.08.2023)
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The tumor immune microenvironment in resected treatment-naive pancreatic cancer patients with long-term survival
van Eijck, Casper W.F., Ju, Jie, van ’t Land, Freek R., Verheij, Maaike, Li, Yunlei, Stubbs, Andrew, Doukas, Michael, Lila, Karishma, Heij, Lara R., Wiltberger, Georg, Alonso, Lola, Malats, Núria, Groot Koerkamp, Bas, Vietsch, Eveline E., van Eijck, Casper H.J.
Published in Pancreatology : official journal of the International Association of Pancreatology (IAP) ... [et al.] (22.08.2024)
Published in Pancreatology : official journal of the International Association of Pancreatology (IAP) ... [et al.] (22.08.2024)
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