by Larremore, Daniel B, Wilder, Bryan, Lester, Evan, Shehata, Soraya, Burke, James M, Hay, James A, Tambe, Milind, Mina, Michael J, Parker, Roy
Published in Science Advances (01.01.2021)

by Menezes, Arthur, Takahashi, Saki, Routledge, Isobel, Metcalf, C Jessica E, Graham, Andrea L, Hay, James A
Published in PLoS computational biology (01.08.2023)

by Gostic, Katelyn M, McGough, Lauren, Baskerville, Edward B, Abbott, Sam, Joshi, Keya, Tedijanto, Christine, Kahn, Rebecca, Niehus, Rene, Hay, James A, De Salazar, Pablo M, Hellewell, Joel, Meakin, Sophie, Munday, James D, Bosse, Nikos I, Sherrat, Katharine, Thompson, Robin N, White, Laura F, Huisman, Jana S, Scire, Jérémie, Bonhoeffer, Sebastian, Stadler, Tanja, Wallinga, Jacco, Funk, Sebastian, Lipsitch, Marc, Cobey, Sarah
Published in PLoS computational biology (10.12.2020)

by Hay, James A, Kissler, Stephen M, Fauver, Joseph R, Mack, Christina, Tai, Caroline G, Samant, Radhika M, Connolly, Sarah, Anderson, Deverick J, Khullar, Gaurav, MacKay, Matthew, Patel, Miral, Kelly, Shannan, Manhertz, April, Eiter, Isaac, Salgado, Daisy, Baker, Tim, Howard, Ben, Dudley, Joel T, Mason, Christopher E, Nair, Manoj, Huang, Yaoxing, DiFiori, John, Ho, David D, Grubaugh, Nathan D, Grad, Yonatan H
Published in eLife (16.11.2022)

by Kissler, Stephen M., Hay, James A., Fauver, Joseph R., Mack, Christina, Tai, Caroline G., Anderson, Deverick J., Ho, David D., Grubaugh, Nathan D., Grad, Yonatan H.
Published in Nature communications (05.10.2023)

by Menkir, Tigist F., Chin, Taylor, Hay, James A., Surface, Erik D., De Salazar, Pablo M., Buckee, Caroline O., Watts, Alexander, Khan, Kamran, Sherbo, Ryan, Yan, Ada W. C., Mina, Michael J., Lipsitch, Marc, Niehus, Rene
Published in Nature communications (12.01.2021)

by Hay, James A, Laurie, Karen, White, Michael, Riley, Steven
Published in PLoS computational biology (01.08.2019)

by Hay, James A, Nouvellet, Pierre, Donnelly, Christl A, Riley, Steven
Published in PLoS neglected tropical diseases (01.12.2018)

by Yang, Bingyi, Lessler, Justin, Zhu, Huachen, Jiang, Chao Qiang, Read, Jonathan M, Hay, James A, Kwok, Kin On, Shen, Ruiyin, Guan, Yi, Riley, Steven, Cummings, Derek A T
Published in PLoS pathogens (01.07.2020)

by De Salazar, Pablo M, Lu, Fred, Hay, James A, Gómez-Barroso, Diana, Fernández-Navarro, Pablo, Martínez, Elena V, Astray-Mochales, Jenaro, Amillategui, Rocío, García-Fulgueiras, Ana, Chirlaque, Maria D, Sánchez-Migallón, Alonso, Larrauri, Amparo, Sierra, María J, Lipsitch, Marc, Simón, Fernando, Santillana, Mauricio, Hernán, Miguel A
Published in PLoS computational biology (01.03.2022)

by Hay, James A, Minter, Amanda, Ainslie, Kylie E C, Lessler, Justin, Yang, Bingyi, Cummings, Derek A T, Kucharski, Adam J, Riley, Steven
Published in PLoS computational biology (01.05.2020)

by Yang, Bingyi, García-Carreras, Bernardo, Lessler, Justin, Read, Jonathan M, Zhu, Huachen, Metcalf, C Jessica E, Hay, James A, Kwok, Kin O, Shen, Ruiyun, Jiang, Chao Q, Guan, Yi, Riley, Steven, Cummings, Derek A
Published in eLife (02.12.2022)

by Gostic, Katelyn M, McGough, Lauren, Baskerville, Edward B, Abbott, Sam, Joshi, Keya, Tedijanto, Christine, Kahn, Rebecca, Niehus, Rene, Hay, James A, De Salazar, Pablo M, Hellewell, Joel, Meakin, Sophie, Munday, James D, Bosse, Nikos I, Sherrat, Katharine, Thompson, Robin N, White, Laura F, Huisman, Jana S, Scire, Jérémie, Bonhoeffer, Sebastian, Stadler, Tanja, Wallinga, Jacco, Funk, Sebastian, Lipsitch, Marc, Cobey, Sarah
Published in PLoS computational biology (01.12.2021)

by Hay, James A, Kennedy-Shaffer, Lee, Kanjilal, Sanjat, Lennon, Niall J, Gabriel, Stacey B, Lipsitch, Marc, Mina, Michael J
Published in Science (16.07.2021)

by Cleary, Brian, Hay, James A, Blumenstiel, Brendan, Harden, Maegan, Cipicchio, Michelle, Bezney, Jon, Simonton, Brooke, Hong, David, Senghore, Madikay, Sesay, Abdul K, Gabriel, Stacey, Regev, Aviv, Mina, Michael J
Published in Science Translational Medicine (14.04.2021)

by Hay, James A., Hellewell, Joel, Qiu, Xueting
Published in European journal of epidemiology (01.07.2021)

by Holmdahl, Inga, Kahn, Rebecca, Hay, James A, Buckee, Caroline O, Mina, Michael J
Published in JAMA network open (03.05.2021)

by Minter, Amanda, Hoschler, Katja, Jagne, Ya Jankey, Sallah, Hadijatou, Armitage, Edwin, Lindsey, Benjamin, Hay, James A, Riley, Steven, de Silva, Thushan I, Kucharski, Adam J
Published in The Journal of infectious diseases (16.05.2022)

by Lipsitch, Marc, Bassett, Mary T, Brownstein, John S, Elliott, Paul, Eyre, David, Grabowski, M Kate, Hay, James A, Johansson, Michael A, Kissler, Stephen M, Larremore, Daniel B, Layden, Jennifer E, Lessler, Justin, Lynfield, Ruth, MacCannell, Duncan, Madoff, Lawrence C, Metcalf, C Jessica E, Meyers, Lauren A, Ofori, Sylvia K, Quinn, Celia, Bento, Ana I, Reich, Nicholas G, Riley, Steven, Rosenfeld, Roni, Samore, Matthew H, Sampath, Rangarajan, Slayton, Rachel B, Swerdlow, David L, Truelove, Shaun, Varma, Jay K, Grad, Yonatan H
Published in Frontiers in public health (15.07.2024)

by McCabe, Ruth, Whittaker, Charles, Sheppard, Richard J, Abdelmagid, Nada, Ahmed, Aljaile, Alabdeen, Israa Zain, Brazeau, Nicholas F, Ahmed Abd Elhameed, Abd Elhameed, Bin-Ghouth, Abdulla Salem, Hamlet, Arran, AbuKoura, Rahaf, Barnsley, Gregory, Hay, James A, Alhaffar, Mervat, Koum Besson, Emilie, Saje, Semira Mitiku, Sisay, Binyam Girma, Gebreyesus, Seifu Hagos, Sikamo, Adane Petros, Worku, Aschalew, Ahmed, Yakob Seman, Mariam, Damen Haile, Sisay, Mitike Molla, Checchi, Francesco, Dahab, Maysoon, Endris, Bilal Shikur, Ghani, Azra C, Walker, Patrick G T, Donnelly, Christl A, Watson, Oliver J
Published in Science advances (09.06.2023)