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Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease
Norman, Jason M., Handley, Scott A., Baldridge, Megan T., Droit, Lindsay, Liu, Catherine Y., Keller, Brian C., Kambal, Amal, Monaco, Cynthia L., Zhao, Guoyan, Fleshner, Phillip, Stappenbeck, Thaddeus S., McGovern, Dermot P.B., Keshavarzian, Ali, Mutlu, Ece A., Sauk, Jenny, Gevers, Dirk, Xavier, Ramnik J., Wang, David, Parkes, Miles, Virgin, Herbert W.
Published in Cell (29.01.2015)
Published in Cell (29.01.2015)
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ApoE isoform– and microbiota-dependent progression of neurodegeneration in a mouse model of tauopathy
Seo, Dong-oh, O’Donnell, David, Jain, Nimansha, Ulrich, Jason D., Herz, Jasmin, Li, Yuhao, Lemieux, Mackenzie, Cheng, Jiye, Hu, Hao, Serrano, Javier R., Bao, Xin, Franke, Emily, Karlsson, Maria, Meier, Martin, Deng, Su, Desai, Chandani, Dodiya, Hemraj, Lelwala-Guruge, Janaki, Handley, Scott A., Kipnis, Jonathan, Sisodia, Sangram S., Gordon, Jeffrey I., Holtzman, David M.
Published in Science (American Association for the Advancement of Science) (13.01.2023)
Published in Science (American Association for the Advancement of Science) (13.01.2023)
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Altered Virome and Bacterial Microbiome in Human Immunodeficiency Virus-Associated Acquired Immunodeficiency Syndrome
Monaco, Cynthia L., Gootenberg, David B., Zhao, Guoyan, Handley, Scott A., Ghebremichael, Musie S., Lim, Efrem S., Lankowski, Alex, Baldridge, Megan T., Wilen, Craig B., Flagg, Meaghan, Norman, Jason M., Keller, Brian C., Luévano, Jesús Mario, Wang, David, Boum, Yap, Martin, Jeffrey N., Hunt, Peter W., Bangsberg, David R., Siedner, Mark J., Kwon, Douglas S., Virgin, Herbert W.
Published in Cell host & microbe (09.03.2016)
Published in Cell host & microbe (09.03.2016)
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Intercellular Mitochondria Transfer to Macrophages Regulates White Adipose Tissue Homeostasis and Is Impaired in Obesity
Brestoff, Jonathan R., Wilen, Craig B., Moley, John R., Li, Yongjia, Zou, Wei, Malvin, Nicole P., Rowen, Marina N., Saunders, Brian T., Ma, Hongming, Mack, Madison R., Hykes, Barry L., Balce, Dale R., Orvedahl, Anthony, Williams, Jesse W., Rohatgi, Nidhi, Wang, Xiaoyan, McAllaster, Michael R., Handley, Scott A., Kim, Brian S., Doench, John G., Zinselmeyer, Bernd H., Diamond, Michael S., Virgin, Herbert W., Gelman, Andrew E., Teitelbaum, Steven L.
Published in Cell metabolism (02.02.2021)
Published in Cell metabolism (02.02.2021)
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In vivo monoclonal antibody efficacy against SARS-CoV-2 variant strains
Chen, Rita E., Winkler, Emma S., Case, James Brett, Aziati, Ishmael D., Bricker, Traci L., Joshi, Astha, Darling, Tamarand L., Ying, Baoling, Errico, John M., Shrihari, Swathi, VanBlargan, Laura A., Xie, Xuping, Gilchuk, Pavlo, Zost, Seth J., Droit, Lindsay, Liu, Zhuoming, Stumpf, Spencer, Wang, David, Handley, Scott A., Stine, W. Blaine, Shi, Pei-Yong, Davis-Gardner, Meredith E., Suthar, Mehul S., Knight, Miguel Garcia, Andino, Raul, Chiu, Charles Y., Ellebedy, Ali H., Fremont, Daved H., Whelan, Sean P. J., Crowe, James E., Purcell, Lisa, Corti, Davide, Boon, Adrianus C. M., Diamond, Michael S.
Published in Nature (London) (05.08.2021)
Published in Nature (London) (05.08.2021)
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The Intestinal Microbiome Restricts Alphavirus Infection and Dissemination through a Bile Acid-Type I IFN Signaling Axis
Winkler, Emma S., Shrihari, Swathi, Hykes, Barry L., Handley, Scott A., Andhey, Prabhakar S., Huang, Yan-Jang S., Swain, Amanda, Droit, Lindsay, Chebrolu, Kranthi K., Mack, Matthias, Vanlandingham, Dana L., Thackray, Larissa B., Cella, Marina, Colonna, Marco, Artyomov, Maxim N., Stappenbeck, Thaddeus S., Diamond, Michael S.
Published in Cell (20.08.2020)
Published in Cell (20.08.2020)
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Resilience of S309 and AZD7442 monoclonal antibody treatments against infection by SARS-CoV-2 Omicron lineage strains
Case, James Brett, Mackin, Samantha, Errico, John M., Chong, Zhenlu, Madden, Emily A., Whitener, Bradley, Guarino, Barbara, Schmid, Michael A., Rosenthal, Kim, Ren, Kuishu, Dang, Ha V., Snell, Gyorgy, Jung, Ana, Droit, Lindsay, Handley, Scott A., Halfmann, Peter J., Kawaoka, Yoshihiro, Crowe, James E., Fremont, Daved H., Virgin, Herbert W., Loo, Yueh-Ming, Esser, Mark T., Purcell, Lisa A., Corti, Davide, Diamond, Michael S.
Published in Nature communications (02.07.2022)
Published in Nature communications (02.07.2022)
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Tropism for tuft cells determines immune promotion of norovirus pathogenesis
Wilen, Craig B., Lee, Sanghyun, Hsieh, Leon L., Orchard, Robert C., Desai, Chandni, Hykes, Barry L., McAllaster, Michael R., Balce, Dale R., Feehley, Taylor, Brestoff, Jonathan R., Hickey, Christina A., Yokoyama, Christine C., Wang, Ya-Ting, MacDuff, Donna A., Kreamalmayer, Darren, Howitt, Michael R., Neil, Jessica A., Cadwell, Ken, Allen, Paul M., Handley, Scott A., van Lookeren Campagne, Menno, Baldridge, Megan T., Virgin, Herbert W.
Published in Science (American Association for the Advancement of Science) (13.04.2018)
Published in Science (American Association for the Advancement of Science) (13.04.2018)
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Effect of Antibiotic-Mediated Microbiome Modulation on Rotavirus Vaccine Immunogenicity: A Human, Randomized-Control Proof-of-Concept Trial
Harris, Vanessa C., Haak, Bastiaan W., Handley, Scott A., Jiang, Baoming, Velasquez, Daniel E., Hykes, Barry L., Droit, Lindsay, Berbers, Guy A.M., Kemper, Elles Marleen, van Leeuwen, Ester M.M., Boele van Hensbroek, Michael, Wiersinga, Willem Joost
Published in Cell host & microbe (08.08.2018)
Published in Cell host & microbe (08.08.2018)
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Pathogenic Simian Immunodeficiency Virus Infection Is Associated with Expansion of the Enteric Virome
Handley, Scott A., Thackray, Larissa B., Zhao, Guoyan, Presti, Rachel, Miller, Andrew D., Droit, Lindsay, Abbink, Peter, Maxfield, Lori F., Kambal, Amal, Duan, Erning, Stanley, Kelly, Kramer, Joshua, Macri, Sheila C., Permar, Sallie R., Schmitz, Joern E., Mansfield, Keith, Brenchley, Jason M., Veazey, Ronald S., Stappenbeck, Thaddeus S., Wang, David, Barouch, Dan H., Virgin, Herbert W.
Published in Cell (12.10.2012)
Published in Cell (12.10.2012)
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Protective efficacy of adenovirus/protein vaccines against SIV challenges in rhesus monkeys
Barouch, Dan H., Alter, Galit, Broge, Thomas, Linde, Caitlyn, Ackerman, Margaret E., Brown, Eric P., Borducchi, Erica N., Smith, Kaitlin M., Nkolola, Joseph P., Liu, Jinyan, Shields, Jennifer, Parenteau, Lily, Whitney, James B., Abbink, Peter, Ng'ang'a, David M., Seaman, Michael S., Lavine, Christy L., Perry, James R., Li, Wenjun, Colantonio, Arnaud D., Lewis, Mark G., Chen, Bing, Wenschuh, Holger, Reimer, Ulf, Piatak, Michael, Lifson, Jeffrey D., Handley, Scott A., Virgin, Herbert W., Koutsoukos, Marguerite, Lorin, Clarisse, Voss, Gerald, Weijtens, Mo, Pau, Maria G., Schuitemaker, Hanneke
Published in Science (American Association for the Advancement of Science) (17.07.2015)
Published in Science (American Association for the Advancement of Science) (17.07.2015)
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Alterations in the oral microbiome in HIV-infected participants after antiretroviral therapy administration are influenced by immune status
Presti, Rachel M., Handley, Scott A., Droit, Lindsay, Ghannoum, Mahmoud, Jacobson, Mark, Shiboski, Caroline H., Webster-Cyriaque, Jennifer, Brown, Todd, Yin, Michael T., Overton, Edgar T.
Published in AIDS (London) (19.06.2018)
Published in AIDS (London) (19.06.2018)
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Discordant transmission of bacteria and viruses from mothers to babies at birth
Maqsood, Rabia, Rodgers, Rachel, Rodriguez, Cynthia, Handley, Scott A., Ndao, I. Malick, Tarr, Phillip I., Warner, Barbara B., Lim, Efrem S., Holtz, Lori R.
Published in Microbiome (10.12.2019)
Published in Microbiome (10.12.2019)
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Ten simple rules and a template for creating workflows-as-applications
Roach, Michael J., Pierce-Ward, N. Tessa, Suchecki, Radoslaw, Mallawaarachchi, Vijini, Papudeshi, Bhavya, Handley, Scott A., Brown, C. Titus, Watson-Haigh, Nathan S., Edwards, Robert A.
Published in PLoS computational biology (01.12.2022)
Published in PLoS computational biology (01.12.2022)
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Oral Antibiotic Treatment of Mice Exacerbates the Disease Severity of Multiple Flavivirus Infections
Thackray, Larissa B., Handley, Scott A., Gorman, Matthew J., Poddar, Subhajit, Bagadia, Prachi, Briseño, Carlos G., Theisen, Derek J., Tan, Qing, Hykes, Barry L., Lin, Hueylie, Lucas, Tiffany M., Desai, Chandni, Gordon, Jeffrey I., Murphy, Kenneth M., Virgin, Herbert W., Diamond, Michael S.
Published in Cell reports (Cambridge) (27.03.2018)
Published in Cell reports (Cambridge) (27.03.2018)
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SIV Infection-Mediated Changes in Gastrointestinal Bacterial Microbiome and Virome Are Associated with Immunodeficiency and Prevented by Vaccination
Handley, Scott A., Desai, Chandni, Zhao, Guoyan, Droit, Lindsay, Monaco, Cynthia L., Schroeder, Andrew C., Nkolola, Joseph P., Norman, Megan E., Miller, Andrew D., Wang, David, Barouch, Dan H., Virgin, Herbert W.
Published in Cell host & microbe (09.03.2016)
Published in Cell host & microbe (09.03.2016)
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HIV-associated gut microbial alterations are dependent on host and geographic context
Rocafort, Muntsa, Gootenberg, David B., Luévano, Jesús M., Paer, Jeffrey M., Hayward, Matthew R., Bramante, Juliet T., Ghebremichael, Musie S., Xu, Jiawu, Rogers, Zoe H., Munoz, Alexander R., Okello, Samson, Kim, June-Ho, Sentongo, Ruth, Wagubi, Robert, Lankowski, Alex, Maruapula, Segametsi, Zhao, Guoyan, Handley, Scott A., Mosepele, Mosepele, Siedner, Mark J., Kwon, Douglas S.
Published in Nature communications (05.02.2024)
Published in Nature communications (05.02.2024)
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