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Gadd, Samantha, Huff, Vicki, Walz, Amy L, Ooms, Ariadne H A G, Armstrong, Amy E, Gerhard, Daniela S, Smith, Malcolm A, Auvil, Jaime M Guidry, Meerzaman, Daoud, Chen, Qing-Rong, Hsu, Chih Hao, Yan, Chunhua, Nguyen, Cu, Hu, Ying, Hermida, Leandro C, Davidsen, Tanja, Gesuwan, Patee, Ma, Yussanne, Zong, Zusheng, Mungall, Andrew J, Moore, Richard A, Marra, Marco A, Dome, Jeffrey S, Mullighan, Charles G, Ma, Jing, Wheeler, David A, Hampton, Oliver A, Ross, Nicole, Gastier-Foster, Julie M, Arold, Stefan T, Perlman, Elizabeth J
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Published in Nature genetics (01.10.2017)
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Genomic analysis of hepatoblastoma identifies distinct molecular and prognostic subgroups
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Mutually exclusive recurrent somatic mutations in MAP2K1 and BRAF support a central role for ERK activation in LCH pathogenesis
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Alternative genetic mechanisms of BRAF activation in Langerhans cell histiocytosis
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Recurrent DGCR8, DROSHA, and SIX Homeodomain Mutations in Favorable Histology Wilms Tumors
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Published in Cancer cell (09.02.2015)
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Recurrent internal tandem duplications of BCOR in clear cell sarcoma of the kidney
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Published in Nature communications (17.11.2015)
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DACH1 mutation frequency in endometrial cancer is associated with high tumor mutation burden
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Whole-Exome sequencing analysis identified TMSB10/TRABD2A locus to be associated with carfilzomib-related cardiotoxicity among patients with multiple myeloma
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Published in Oncotarget (11.07.2017)
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SVachra: a tool to identify genomic structural variation in mate pair sequencing data containing inward and outward facing reads
Hampton, Oliver A, English, Adam C, Wang, Mark, Salerno, William J, Liu, Yue, Muzny, Donna M, Han, Yi, Wheeler, David A, Worley, Kim C, Lupski, James R, Gibbs, Richard A
Published in BMC genomics (03.10.2017)
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Non-malignant respiratory epithelial cells preferentially proliferate from resected non-small cell lung cancer specimens cultured under conditionally reprogrammed conditions
Gao, Boning, Huang, Chunxian, Kernstine, Kemp, Pelekanou, Vasiliki, Kluger, Yuval, Jiang, Tingting, Peters-Hall, Jennifer R, Coquelin, Melissa, Girard, Luc, Zhang, Wei, Huffman, Kenneth, Oliver, Dwight, Kinose, Fumi, Haura, Eric, Teer, Jamie K, Rix, Uwe, Le, Anh T, Aisner, Dara L, Varella-Garcia, Marileila, Doebele, Robert C, Covington, Kyle R, Hampton, Oliver A, Doddapaneni, Harsha V, Jayaseelan, Joy C, Hu, Jianhong, Wheeler, David A, Shay, Jerry W, Rimm, David L, Gazdar, Adi, Minna, John D
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Published in Oncotarget (14.02.2017)
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Plasma cell dependence on histone/protein deacetylase 11 reveals a therapeutic target in multiple myeloma
Mostofa, Agm, Distler, Allison, Meads, Mark B, Sahakian, Eva, Powers, John J, Achille, Alexandra, Noyes, David, Wright, Gabriela, Fang, Bin, Izumi, Victoria, Koomen, John, Rampakrishnan, Rupal, Nguyen, Tuan P, De Avila, Gabriel, Silva, Ariosto S, Sudalagunta, Praneeth, Canevarolo, Rafael Renatino, Siqueira Silva, Maria D Coelho, Alugubelli, Raghunandan Reddy, Dai, Hongyue A, Kulkarni, Amit, Dalton, William S, Hampton, Oliver A, Welsh, Eric A, Teer, Jamie K, Tungesvik, Alexandre, Wright, Kenneth L, Pinilla-Ibarz, Javier, Sotomayor, Eduardo M, Shain, Kenneth H, Brayer, Jason
Published in JCI insight (22.12.2021)
Published in JCI insight (22.12.2021)
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Rise and fall of subclones from diagnosis to relapse in pediatric B-acute lymphoblastic leukaemia
Ma, Xiaotu, Edmonson, Michael, Yergeau, Donald, Muzny, Donna M., Hampton, Oliver A., Rusch, Michael, Song, Guangchun, Easton, John, Harvey, Richard C., Wheeler, David A., Ma, Jing, Doddapaneni, HarshaVardhan, Vadodaria, Bhavin, Wu, Gang, Nagahawatte, Panduka, Carroll, William L., Chen, I-Ming, Gastier-Foster, Julie M., Relling, Mary V., Smith, Malcolm A., Devidas, Meenakshi, Auvil, Jaime M. Guidry, Downing, James R., Loh, Mignon L., Willman, Cheryl L., Gerhard, Daniela S., Mullighan, Charles G., Hunger, Stephen P., Zhang, Jinghui
Published in Nature communications (19.03.2015)
Published in Nature communications (19.03.2015)
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Significance of TP53 Mutation in Wilms Tumors with Diffuse Anaplasia: A Report from the Children's Oncology Group
Ooms, Ariadne H A G, Gadd, Samantha, Gerhard, Daniela S, Smith, Malcolm A, Guidry Auvil, Jaime M, Meerzaman, Daoud, Chen, Qing-Rong, Hsu, Chih Hao, Yan, Chunhua, Nguyen, Cu, Hu, Ying, Ma, Yussanne, Zong, Zusheng, Mungall, Andrew J, Moore, Richard A, Marra, Marco A, Huff, Vicki, Dome, Jeffrey S, Chi, Yueh-Yun, Tian, Jing, Geller, James I, Mullighan, Charles G, Ma, Jing, Wheeler, David A, Hampton, Oliver A, Walz, Amy L, van den Heuvel-Eibrink, Marry M, de Krijger, Ronald R, Ross, Nicole, Gastier-Foster, Julie M, Perlman, Elizabeth J
Published in Clinical cancer research (15.11.2016)
Published in Clinical cancer research (15.11.2016)
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Novel patient-derived xenograft and cell line models for therapeutic testing of pediatric liver cancer
Bissig-Choisat, Beatrice, Kettlun-Leyton, Claudia, Legras, Xavier D, Zorman, Barry, Barzi, Mercedes, Chen, Leon L, Amin, Mansi D, Huang, Yung-Hsin, Pautler, Robia G, Hampton, Oliver A, Prakash, Masand M, Yang, Diane, Borowiak, Malgorzata, Muzny, Donna, Doddapaneni, Harsha Vardhan, Hu, Jianhong, Shi, Yan, Gaber, M. Waleed, Hicks, M. John, Thompson, Patrick A, Lu, Yiling, Mills, Gordon B, Finegold, Milton, Goss, John A, Parsons, D. Williams, Vasudevan, Sanjeev A, Sumazin, Pavel, López-Terrada, Dolores, Bissig, Karl-Dimiter
Published in Journal of hepatology (01.08.2016)
Published in Journal of hepatology (01.08.2016)
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Metabolic Changes Are Associated with Melphalan Resistance in Multiple Myeloma
Koomen, David C, Meads, Mark B, Magaletti, Dario M, Guingab-Cagmat, Joy D, Oliveira, Paula S, Fang, Bin, Liu, Min, Welsh, Eric A, Meke, Laurel E, Jiang, Zhijie, Hampton, Oliver A, Tungesvik, Alexandre, De Avila, Gabriel, Alugubelli, Raghunandan Reddy, Nishihori, Taiga, Silva, Ariosto S, Eschrich, Steven A, Garrett, Timothy J, Koomen, John M, Shain, Kenneth H
Published in Journal of proteome research (04.06.2021)
Published in Journal of proteome research (04.06.2021)
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Ampullary Cancers Harbor ELF3 Tumor Suppressor Gene Mutations and Exhibit Frequent WNT Dysregulation
Gingras, Marie-Claude, Covington, Kyle R., Chang, David K., Donehower, Lawrence A., Gill, Anthony J., Ittmann, Michael M., Creighton, Chad J., Johns, Amber L., Shinbrot, Eve, Dewal, Ninad, Fisher, William E., Pilarsky, Christian, Grützmann, Robert, Overman, Michael J., Jamieson, Nigel B., Van Buren, George, Drummond, Jennifer, Walker, Kimberly, Hampton, Oliver A., Xi, Liu, Muzny, Donna M., Doddapaneni, Harsha, Lee, Sandra L., Bellair, Michelle, Hu, Jianhong, Han, Yi, Dinh, Huyen H., Dahdouli, Mike, Samra, Jaswinder S., Bailey, Peter, Waddell, Nicola, Pearson, John V., Harliwong, Ivon, Wang, Huamin, Aust, Daniela, Oien, Karin A., Hruban, Ralph H., Hodges, Sally E., McElhany, Amy, Saengboonmee, Charupong, Duthie, Fraser R., Grimmond, Sean M., Biankin, Andrew V., Wheeler, David A., Gibbs, Richard A.
Published in Cell reports (Cambridge) (02.02.2016)
Published in Cell reports (Cambridge) (02.02.2016)
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MLLT1 YEATS domain mutations in clinically distinctive Favourable Histology Wilms tumours
Perlman, Elizabeth J., Gadd, Samantha, Arold, Stefan T., Radhakrishnan, Anand, Gerhard, Daniela S., Jennings, Lawrence, Huff, Vicki, Guidry Auvil, Jaime M., Davidsen, Tanja M., Dome, Jeffrey S., Meerzaman, Daoud, Hsu, Chih Hao, Nguyen, Cu, Anderson, James, Ma, Yussanne, Mungall, Andrew J., Moore, Richard A., Marra, Marco A., Mullighan, Charles G., Ma, Jing, Wheeler, David A., Hampton, Oliver A., Gastier-Foster, Julie M., Ross, Nicole, Smith, Malcolm A.
Published in Nature communications (04.12.2015)
Published in Nature communications (04.12.2015)
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