ilastik: interactive machine learning for (bio)image analysis
Berg, Stuart, Kutra, Dominik, Kroeger, Thorben, Straehle, Christoph N, Kausler, Bernhard X, Haubold, Carsten, Schiegg, Martin, Ales, Janez, Beier, Thorsten, Rudy, Markus, Eren, Kemal, Cervantes, Jaime I, Xu, Buote, Beuttenmueller, Fynn, Wolny, Adrian, Zhang, Chong, Koethe, Ullrich, Hamprecht, Fred A, Kreshuk, Anna
Published in Nature methods (01.12.2019)
Published in Nature methods (01.12.2019)
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Journal Article
A comparison of random forest and its Gini importance with standard chemometric methods for the feature selection and classification of spectral data
Menze, Bjoern H, Kelm, B Michael, Masuch, Ralf, Himmelreich, Uwe, Bachert, Peter, Petrich, Wolfgang, Hamprecht, Fred A
Published in BMC bioinformatics (10.07.2009)
Published in BMC bioinformatics (10.07.2009)
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Journal Article
Computer-aided diagnosis from weak supervision: A benchmarking study
Kandemir, Melih, Hamprecht, Fred A
Published in Computerized medical imaging and graphics (01.06.2015)
Published in Computerized medical imaging and graphics (01.06.2015)
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Journal Article
An objective comparison of cell-tracking algorithms
Ulman, Vladimír, Maška, Martin, Magnusson, Klas E G, Ronneberger, Olaf, Haubold, Carsten, Harder, Nathalie, Matula, Pavel, Matula, Petr, Svoboda, David, Radojevic, Miroslav, Smal, Ihor, Rohr, Karl, Jaldén, Joakim, Blau, Helen M, Dzyubachyk, Oleh, Lelieveldt, Boudewijn, Xiao, Pengdong, Li, Yuexiang, Cho, Siu-Yeung, Dufour, Alexandre C, Olivo-Marin, Jean-Christophe, Reyes-Aldasoro, Constantino C, Solis-Lemus, Jose A, Bensch, Robert, Brox, Thomas, Stegmaier, Johannes, Mikut, Ralf, Wolf, Steffen, Hamprecht, Fred A, Esteves, Tiago, Quelhas, Pedro, Demirel, Ömer, Malmström, Lars, Jug, Florian, Tomancak, Pavel, Meijering, Erik, Muñoz-Barrutia, Arrate, Kozubek, Michal, Ortiz-de-Solorzano, Carlos
Published in Nature methods (01.12.2017)
Published in Nature methods (01.12.2017)
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Journal Article
Imagining the future of bioimage analysis
Meijering, Erik, Carpenter, Anne E, Peng, Hanchuan, Hamprecht, Fred A, Olivo-Marin, Jean-Christophe
Published in Nature biotechnology (01.12.2016)
Published in Nature biotechnology (01.12.2016)
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Journal Article
Accurate and versatile 3D segmentation of plant tissues at cellular resolution
Wolny, Adrian, Cerrone, Lorenzo, Vijayan, Athul, Tofanelli, Rachele, Barro, Amaya Vilches, Louveaux, Marion, Wenzl, Christian, Strauss, Sören, Wilson-Sánchez, David, Lymbouridou, Rena, Steigleder, Susanne S, Pape, Constantin, Bailoni, Alberto, Duran-Nebreda, Salva, Bassel, George W, Lohmann, Jan U, Tsiantis, Miltos, Hamprecht, Fred A, Schneitz, Kay, Maizel, Alexis, Kreshuk, Anna
Published in eLife (29.07.2020)
Published in eLife (29.07.2020)
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Journal Article
End-to-End Learning of Decision Trees and Forests
Hehn, Thomas M., Kooij, Julian F. P., Hamprecht, Fred A.
Published in International journal of computer vision (01.04.2020)
Published in International journal of computer vision (01.04.2020)
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Journal Article
Seipin forms a flexible cage at lipid droplet formation sites
Arlt, Henning, Sui, Xuewu, Folger, Brayden, Adams, Carson, Chen, Xiao, Remme, Roman, Hamprecht, Fred A, DiMaio, Frank, Liao, Maofu, Goodman, Joel M, Farese, Jr, Robert V, Walther, Tobias C
Published in Nature structural & molecular biology (01.03.2022)
Published in Nature structural & molecular biology (01.03.2022)
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Journal Article
The Mutex Watershed and its Objective: Efficient, Parameter-Free Graph Partitioning
Wolf, Steffen, Bailoni, Alberto, Pape, Constantin, Rahaman, Nasim, Kreshuk, Anna, Kothe, Ullrich, Hamprecht, Fred A.
Published in IEEE transactions on pattern analysis and machine intelligence (01.10.2021)
Published in IEEE transactions on pattern analysis and machine intelligence (01.10.2021)
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Journal Article
Experimental and computational analyses reveal that environmental restrictions shape HIV-1 spread in 3D cultures
Imle, Andrea, Kumberger, Peter, Schnellbächer, Nikolas D, Fehr, Jana, Carrillo-Bustamante, Paola, Ales, Janez, Schmidt, Philip, Ritter, Christian, Godinez, William J, Müller, Barbara, Rohr, Karl, Hamprecht, Fred A, Schwarz, Ulrich S, Graw, Frederik, Fackler, Oliver T
Published in Nature communications (13.05.2019)
Published in Nature communications (13.05.2019)
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Journal Article
A digital 3D reference atlas reveals cellular growth patterns shaping the Arabidopsis ovule
Vijayan, Athul, Tofanelli, Rachele, Strauss, Sören, Cerrone, Lorenzo, Wolny, Adrian, Strohmeier, Joanna, Kreshuk, Anna, Hamprecht, Fred A, Smith, Richard S, Schneitz, Kay
Published in eLife (06.01.2021)
Published in eLife (06.01.2021)
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Journal Article
Multicut brings automated neurite segmentation closer to human performance
Beier, Thorsten, Pape, Constantin, Rahaman, Nasim, Prange, Timo, Berg, Stuart, Bock, Davi D, Cardona, Albert, Knott, Graham W, Plaza, Stephen M, Scheffer, Louis K, Koethe, Ullrich, Kreshuk, Anna, Hamprecht, Fred A
Published in Nature methods (01.02.2017)
Published in Nature methods (01.02.2017)
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Journal Article
Automated detection of synapses in serial section transmission electron microscopy image stacks
Kreshuk, Anna, Koethe, Ullrich, Pax, Elizabeth, Bock, Davi D, Hamprecht, Fred A
Published in PloS one (06.02.2014)
Published in PloS one (06.02.2014)
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Journal Article
Graphical model for joint segmentation and tracking of multiple dividing cells
Schiegg, Martin, Hanslovsky, Philipp, Haubold, Carsten, Koethe, Ullrich, Hufnagel, Lars, Hamprecht, Fred A
Published in Bioinformatics (15.03.2015)
Published in Bioinformatics (15.03.2015)
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Journal Article
A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems
Kappes, Jörg H., Andres, Bjoern, Hamprecht, Fred A., Schnörr, Christoph, Nowozin, Sebastian, Batra, Dhruv, Kim, Sungwoong, Kausler, Bernhard X., Kröger, Thorben, Lellmann, Jan, Komodakis, Nikos, Savchynskyy, Bogdan, Rother, Carsten
Published in International journal of computer vision (01.11.2015)
Published in International journal of computer vision (01.11.2015)
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Journal Article
Visualizing hierarchies in scRNA-seq data using a density tree-biased autoencoder
Garrido, Quentin, Damrich, Sebastian, Jäger, Alexander, Cerletti, Dario, Claassen, Manfred, Najman, Laurent, Hamprecht, Fred A
Published in Bioinformatics (24.06.2022)
Published in Bioinformatics (24.06.2022)
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Journal Article
Three-dimensional immersive virtual reality for studying cellular compartments in 3D models from EM preparations of neural tissues
Calì, Corrado, Baghabra, Jumana, Boges, Daniya J., Holst, Glendon R., Kreshuk, Anna, Hamprecht, Fred A., Srinivasan, Madhusudhanan, Lehväslaiho, Heikki, Magistretti, Pierre J.
Published in Journal of comparative neurology (1911) (01.01.2016)
Published in Journal of comparative neurology (1911) (01.01.2016)
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Journal Article
A deep learning-based toolkit for 3D nuclei segmentation and quantitative analysis in cellular and tissue context
Vijayan, Athul, Mody, Tejasvinee Atul, Yu, Qin, Wolny, Adrian, Cerrone, Lorenzo, Strauss, Soeren, Tsiantis, Miltos, Smith, Richard S., Hamprecht, Fred A., Kreshuk, Anna, Schneitz, Kay
Published in Development (Cambridge) (15.07.2024)
Published in Development (Cambridge) (15.07.2024)
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