Predicting and elucidating the post-printing behavior of 3D printed cancer cells in hydrogel structures by integrating in-vitro and in-silico experiments
Mohammadrezaei, Dorsa, Moghimi, Nafiseh, Vandvajdi, Shadi, Powathil, Gibin, Hamis, Sara, Kohandel, Mohammad
Published in Scientific reports (21.01.2023)
Published in Scientific reports (21.01.2023)
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Journal Article
Targeting Cellular DNA Damage Responses in Cancer: An In Vitro-Calibrated Agent-Based Model Simulating Monolayer and Spheroid Treatment Responses to ATR-Inhibiting Drugs
Hamis, Sara, Yates, James, Chaplain, Mark A. J., Powathil, Gibin G.
Published in Bulletin of mathematical biology (01.10.2021)
Published in Bulletin of mathematical biology (01.10.2021)
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Journal Article
Combining hypoxia-activated prodrugs and radiotherapy in silico: Impact of treatment scheduling and the intra-tumoural oxygen landscape
Hamis, Sara, Kohandel, Mohammad, Dubois, Ludwig J, Yaromina, Ala, Lambin, Philippe, Powathil, Gibin G
Published in PLoS computational biology (01.08.2020)
Published in PLoS computational biology (01.08.2020)
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Journal Article
Quantifying ERK activity in response to inhibition of the BRAFV600E-MEK-ERK cascade using mathematical modelling
Hamis, Sara J., Kapelyukh, Yury, McLaren, Aileen, Henderson, Colin J., Roland Wolf, C., Chaplain, Mark A. J.
Published in British journal of cancer (23.11.2021)
Published in British journal of cancer (23.11.2021)
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Journal Article
Spatial cumulant models enable spatially informed treatment strategies and analysis of local interactions in cancer systems
Hamis, Sara, Somervuo, Panu, Ågren, J. Arvid, Tadele, Dagim Shiferaw, Kesseli, Juha, Scott, Jacob G., Nykter, Matti, Gerlee, Philip, Finkelshtein, Dmitri, Ovaskainen, Otso
Published in Journal of mathematical biology (2023)
Published in Journal of mathematical biology (2023)
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Journal Article
Reducing phenotype-structured PDE models of cancer evolution to systems of ODEs: a generalised moment dynamics approach
Villa, Chiara, Maini, Philip K, Browning, Alexander P, Jenner, Adrianne L, Hamis, Sara, Cassidy, Tyler
Year of Publication 03.06.2024
Year of Publication 03.06.2024
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Journal Article
Iterative community-driven development of a SARS-CoV-2 tissue simulator
Getz, Michael, Wang, Yafei, An, Gary, Asthana, Maansi, Becker, Andrew, Cockrell, Chase, Collier, Nicholson, Craig, Morgan, Davis, Courtney L, Faeder, James R, Ford Versypt, Ashlee N, Mapder, Tarunendu, Gianlupi, Juliano F, Glazier, James A, Hamis, Sara, Heiland, Randy, Hillen, Thomas, Hou, Dennis, Islam, Mohammad Aminul, Jenner, Adrianne L, Kurtoglu, Furkan, Larkin, Caroline I, Liu, Bing, Macfarlane, Fiona, Maygrundter, Pablo, Morel, Penelope A, Narayanan, Aarthi, Ozik, Jonathan, Pienaar, Elsje, Rangamani, Padmini, Saglam, Ali Sinan, Shoemaker, Jason Edward, Smith, Amber M, Weaver, Jordan J A, Macklin, Paul
Published in bioRxiv : the preprint server for biology (10.11.2021)
Published in bioRxiv : the preprint server for biology (10.11.2021)
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Journal Article
Spatial cumulant models enable spatially informed treatment strategies and analysis of local interactions in cancer systems
Hamis, Sara, Somervuo, Panu, Agren, J Arvid, Dagim Shiferaw Tadele, Kesseli, Juha, Scott, Jacob G, Nykter, Matti, Gerlee, Philip, Finkelshtein, Dmitri, Ovaskainen, Otso
Published in bioRxiv (08.05.2022)
Published in bioRxiv (08.05.2022)
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Paper
Rapid community-driven development of a SARS-CoV-2 tissue simulator
Getz, Michael, Wang, Yafei, An, Gary, Becker, Andrew, Cockrell, Chase, Nicholson Collier, Morgan, Craig, Davis, Courtney L, Faeder, James, Ashlee N Ford Versypt, Gianlupi, Juliano F, Glazier, James A, Hamis, Sara, Heiland, Randy, Hillen, Thomas, Hou, Dennis, Islam, Mohammad Aminul, Jenner, Adrianne, Kurtoglu, Furkan, Liu, Bing, Macfarlane, Fiona, Maygrundter, Pablo, Morel, Penelope, Narayanan, Aarthi, Ozik, Jonathan, Pienaar, Elsje, Rangamani, Padmini, Shoemaker, Jason E, Smith, Amber M, Macklin, Paul
Published in bioRxiv (29.07.2020)
Published in bioRxiv (29.07.2020)
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Paper