Assessing Nanopore Sequencing for Clinical Diagnostics: a Comparison of Next-Generation Sequencing (NGS) Methods for Mycobacterium tuberculosis
Smith, Carol, Halse, Tanya A, Shea, Joseph, Modestil, Herns, Fowler, Randal C, Musser, Kimberlee A, Escuyer, Vincent, Lapierre, Pascal
Published in Journal of clinical microbiology (17.12.2020)
Published in Journal of clinical microbiology (17.12.2020)
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Journal Article
Bordetella pertussis Strain Lacking Pertactin and Pertussis Toxin
Williams, Margaret M, Sen, Kathryn, Weigand, Michael R, Skoff, Tami H, Cunningham, Victoria A, Halse, Tanya A, Tondella, M Lucia
Published in Emerging infectious diseases (01.02.2016)
Published in Emerging infectious diseases (01.02.2016)
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Journal Article
Characterization of Mycobacterium salfingeri sp. nov.: A novel nontuberculous mycobacteria isolated from a human wound infection
Musser, Emily, Smith, Carol, Halse, Tanya A., Kohlerschmidt, Donna, Rourke, Amy, Fiero, Alexandra, Musser, Kimberlee A., Escuyer, Vincent, Lapierre, Pascal
Published in Frontiers in microbiology (10.10.2022)
Published in Frontiers in microbiology (10.10.2022)
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Journal Article
Novel Mycobacterium tuberculosis Complex Genotype Related to M. caprae
Shea, Joseph, Smith, Carol, Halse, Tanya A, Kohlerschmidt, Donna, Rourke, Amy K, Musser, Kimberlee A, Escuyer, Vincent, Lapierre, Pascal
Published in Emerging infectious diseases (01.07.2022)
Published in Emerging infectious diseases (01.07.2022)
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Journal Article
Mycobacterium orygis Lymphadenitis in New York, USA
Marcos, Luis A, Spitzer, Eric D, Mahapatra, Rahul, Ma, Yupo, Halse, Tanya A, Shea, Joseph, Isabelle, Michelle, Lapierre, Pascal, Escuyer, Vincent E
Published in Emerging infectious diseases (01.10.2017)
Published in Emerging infectious diseases (01.10.2017)
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Journal Article
Neonatal Conjunctivitis Caused by Neisseria meningitidis US Urethritis Clade, New York, USA, August 2017
Kretz, Cecilia B, Bergeron, Genevieve, Aldrich, Margaret, Bloch, Danielle, Del Rosso, Paula E, Halse, Tanya A, Ostrowsky, Belinda, Liu, Qinghuan, Gonzalez, Edimarlyn, Omoregie, Enoma, Chicaiza, Ludwin, Zayas, Greicy, Tha, Bun, Liang, Angela, Wang, Jade C, Levi, Michael, Hughes, Scott, Musser, Kimberlee A, Weiss, Don, Rakeman, Jennifer L
Published in Emerging infectious diseases (01.05.2019)
Published in Emerging infectious diseases (01.05.2019)
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Journal Article
Direct detection of drug-resistant Mycobacterium tuberculosis using targeted next generation sequencing
Murphy, Shannon G, Smith, Carol, Lapierre, Pascal, Shea, Joseph, Patel, Kruthikaben, Halse, Tanya A, Dickinson, Michelle, Escuyer, Vincent, Rowlinson, Marie Claire, Musser, Kimberlee A
Published in Frontiers in public health (29.06.2023)
Published in Frontiers in public health (29.06.2023)
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Journal Article
Combined Real-Time PCR and rpoB Gene Pyrosequencing for Rapid Identification of Mycobacterium tuberculosis and Determination of Rifampin Resistance Directly in Clinical Specimens
Halse, Tanya A, Edwards, Justine, Cunningham, Phyllis L, Wolfgang, William J, Dumas, Nellie B, Escuyer, Vincent E, Musser, Kimberlee A
Published in Journal of Clinical Microbiology (01.04.2010)
Published in Journal of Clinical Microbiology (01.04.2010)
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Journal Article
Postmortem diagnosis of invasive meningococcal disease
Ridpath, Alison D, Halse, Tanya A, Musser, Kimberlee A, Wroblewski, Danielle, Paddock, Christopher D, Shieh, Wun-Ju, Pasquale-Styles, Melissa, Scordi-Bello, Irini, Del Rosso, Paula E, Weiss, Don
Published in Emerging infectious diseases (01.03.2014)
Published in Emerging infectious diseases (01.03.2014)
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Journal Article
Rapid Molecular Characterization of Clostridium difficile and Assessment of Populations of C. difficile in Stool Specimens
Wroblewski, Danielle, Hannett, George E, Bopp, Dianna J, Dumyati, Ghinwa K, Halse, Tanya A, Dumas, Nellie B, Musser, Kimberlee A
Published in Journal of Clinical Microbiology (01.07.2009)
Published in Journal of Clinical Microbiology (01.07.2009)
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Journal Article
Comprehensive Whole-Genome Sequencing and Reporting of Drug Resistance Profiles on Clinical Cases of Mycobacterium tuberculosis in New York State
Shea, Joseph, Halse, Tanya A, Lapierre, Pascal, Shudt, Matthew, Kohlerschmidt, Donna, Van Roey, Patrick, Limberger, Ronald, Taylor, Jill, Escuyer, Vincent, Musser, Kimberlee A
Published in Journal of clinical microbiology (01.06.2017)
Published in Journal of clinical microbiology (01.06.2017)
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Journal Article
Epidemiologic Investigation and Targeted Vaccination Initiative in Response to an Outbreak of Meningococcal Disease among Illicit Drug Users in Brooklyn, New York
Weiss, Don, Stern, Eric J., Zimmerman, Christopher, Bregman, Brooke, Yeung, Alice, Das, Debjani, Dentinger, Catherine M., Marx, Melissa A., Kornblum, John, Lee, Lillian, Halse, Tanya A., Mayer, Leonard W., Hatcher, Cynthia P., Theodore, M. Jordan, Schmink, Susanna, Harcourt, Brian H., Zucker, Jane R., Layton, Marci, Clark, Thomas A.
Published in Clinical infectious diseases (01.04.2009)
Published in Clinical infectious diseases (01.04.2009)
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Journal Article
Low-Level Rifampin Resistance and rpoB Mutations in Mycobacterium tuberculosis: an Analysis of Whole-Genome Sequencing and Drug Susceptibility Test Data in New York
Shea, Joseph, Halse, Tanya A, Kohlerschmidt, Donna, Lapierre, Pascal, Modestil, Herns A, Kearns, Cheryl H, Dworkin, Felicia F, Rakeman, Jennifer L, Escuyer, Vincent, Musser, Kimberlee A
Published in Journal of clinical microbiology (19.03.2021)
Published in Journal of clinical microbiology (19.03.2021)
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Journal Article
Lymphogranuloma Venereum: An Increasingly Common Anorectal Infection Among Men Who Have Sex With Men Attending New York City Sexual Health Clinics
Pathela, Preeti, Jamison, Kelly, Kornblum, John, Quinlan, Tammy, Halse, Tanya A, Schillinger, Julia A
Published in Sexually transmitted diseases (01.02.2019)
Published in Sexually transmitted diseases (01.02.2019)
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Journal Article
Whole-Genome Single-Nucleotide Polymorphism (SNP) Analysis Applied Directly to Stool for Genotyping Shiga Toxin-Producing Escherichia coli: an Advanced Molecular Detection Method for Foodborne Disease Surveillance and Outbreak Tracking
Singh, Navjot, Lapierre, Pascal, Quinlan, Tammy M, Halse, Tanya A, Wirth, Samantha, Dickinson, Michelle C, Lasek-Nesselquist, Erica, Musser, Kimberlee A
Published in Journal of clinical microbiology (01.07.2019)
Published in Journal of clinical microbiology (01.07.2019)
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Journal Article
Sex Difference in Meningococcal Disease Mortality, New York City, 2008-2016
Bloch, Danielle, Murray, Kenya, Peterson, Eric, Ngai, Stephanie, Rubinstein, Inessa, Halse, Tanya A, Ezeoke, Ifeoma, Miller, Laura, Arakaki, Lola, Ramautar, Arianne, Antwi, Mike, Del Rosso, Paula, Dorsinville, Marie, Clark, Sandhya, Halbrook, Megan, Kennedy, Joseph, Braunstein, Sarah, Weiss, Don
Published in Clinical infectious diseases (16.08.2018)
Published in Clinical infectious diseases (16.08.2018)
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Journal Article
Mycobacterium tuberculosis complex whole-genome sequencing in New York State: Implementation of a reduced phenotypic drug susceptibility testing algorithm
Shea, Joseph, Halse, Tanya A., Modestil, Herns, Kearns, Cheryl, Fowler, Randal C., Da Costa-Carter, Cherry-Ann, Siemetzki-Kapoor, Ulrike, Leisner, Melissa, Lapierre, Pascal, Kohlerschmidt, Donna, Rowlinson, Marie-Claire, Escuyer, Vincent, Musser, Kimberlee A.
Published in Tuberculosis (Edinburgh, Scotland) (01.09.2023)
Published in Tuberculosis (Edinburgh, Scotland) (01.09.2023)
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Journal Article
Detection of Borrelia miyamotoi and other tick-borne pathogens in human clinical specimens and Ixodes scapularis ticks in New York State, 2012-2015
Wroblewski, Danielle, Gebhardt, Linda, Prusinski, Melissa A, Meehan, Lisa J, Halse, Tanya A, Musser, Kimberlee A
Published in Ticks and tick-borne diseases (01.03.2017)
Published in Ticks and tick-borne diseases (01.03.2017)
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