A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling
D'Amore, Rosalinda, Ijaz, Umer Zeeshan, Schirmer, Melanie, Kenny, John G, Gregory, Richard, Darby, Alistair C, Shakya, Migun, Podar, Mircea, Quince, Christopher, Hall, Neil
Published in BMC genomics (14.01.2016)
Published in BMC genomics (14.01.2016)
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Journal Article
The industrial melanism mutation in British peppered moths is a transposable element
Hof, Arjen E. van’t, Campagne, Pascal, Rigden, Daniel J., Yung, Carl J., Lingley, Jessica, Quail, Michael A., Hall, Neil, Darby, Alistair C., Saccheri, Ilik J.
Published in Nature (London) (02.06.2016)
Published in Nature (London) (02.06.2016)
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Journal Article
Accurate determination of microbial diversity from 454 pyrosequencing data
Quince, Christopher, Lanzén, Anders, Curtis, Thomas P, Davenport, Russell J, Hall, Neil, Head, Ian M, Read, L Fiona, Sloan, William T
Published in Nature methods (01.09.2009)
Published in Nature methods (01.09.2009)
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Journal Article
Application of next-generation sequencing technologies in virology
RADFORD, Alan D, CHAPMAN, David, DIXON, Linda, CHANTREY, Julian, DARBY, Alistair C, HALL, Neil
Published in Journal of general virology (01.09.2012)
Published in Journal of general virology (01.09.2012)
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Journal Article
Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes
Ilott, Nicholas E., Heward, James A., Roux, Benoit, Tsitsiou, Eleni, Fenwick, Peter S., Lenzi, Luca, Goodhead, Ian, Hertz-Fowler, Christiane, Heger, Andreas, Hall, Neil, Donnelly, Louise E., Sims, David, Lindsay, Mark A.
Published in Nature communications (09.06.2014)
Published in Nature communications (09.06.2014)
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Journal Article
Comparison of the human gastric microbiota in hypochlorhydric states arising as a result of Helicobacter pylori-induced atrophic gastritis, autoimmune atrophic gastritis and proton pump inhibitor use
Parsons, Bryony N, Ijaz, Umer Z, D'Amore, Rosalinda, Burkitt, Michael D, Eccles, Richard, Lenzi, Luca, Duckworth, Carrie A, Moore, Andrew R, Tiszlavicz, Laszlo, Varro, Andrea, Hall, Neil, Pritchard, D Mark
Published in PLoS pathogens (01.11.2017)
Published in PLoS pathogens (01.11.2017)
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Journal Article
Towards the human colorectal cancer microbiome
Marchesi, Julian R, Dutilh, Bas E, Hall, Neil, Peters, Wilbert H M, Roelofs, Rian, Boleij, Annemarie, Tjalsma, Harold
Published in PloS one (24.05.2011)
Published in PloS one (24.05.2011)
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Journal Article
Antagonistic coevolution accelerates molecular evolution
Brockhurst, Michael A, Paterson, Steve, Vogwill, Tom, Buckling, Angus, Benmayor, Rebecca, Spiers, Andrew J, Thomson, Nicholas R, Quail, Mike, Smith, Frances, Walker, Danielle, Libberton, Ben, Fenton, Andrew, Hall, Neil
Published in Nature (London) (11.03.2010)
Published in Nature (London) (11.03.2010)
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Journal Article
Analysis of the bread wheat genome using whole-genome shotgun sequencing
Brenchley, Rachel, Spannagl, Manuel, Pfeifer, Matthias, Barker, Gary L. A., D’Amore, Rosalinda, Allen, Alexandra M., McKenzie, Neil, Kramer, Melissa, Kerhornou, Arnaud, Bolser, Dan, Kay, Suzanne, Waite, Darren, Trick, Martin, Bancroft, Ian, Gu, Yong, Huo, Naxin, Luo, Ming-Cheng, Sehgal, Sunish, Gill, Bikram, Kianian, Sharyar, Anderson, Olin, Kersey, Paul, Dvorak, Jan, McCombie, W. Richard, Hall, Anthony, Mayer, Klaus F. X., Edwards, Keith J., Bevan, Michael W., Hall, Neil
Published in Nature (London) (29.11.2012)
Published in Nature (London) (29.11.2012)
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Journal Article
Analysis of the recombination landscape of hexaploid bread wheat reveals genes controlling recombination and gene conversion frequency
Gardiner, Laura-Jayne, Wingen, Luzie U, Bailey, Paul, Joynson, Ryan, Brabbs, Thomas, Wright, Jonathan, Higgins, James D, Hall, Neil, Griffiths, Simon, Clavijo, Bernardo J, Hall, Anthony
Published in Genome Biology (15.04.2019)
Published in Genome Biology (15.04.2019)
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Journal Article
Evolution of Salmonella enterica serotype Typhimurium driven by anthropogenic selection and niche adaptation
Bawn, Matt, Alikhan, Nabil-Fareed, Thilliez, Gaëtan, Kirkwood, Mark, Wheeler, Nicole E, Petrovska, Liljana, Dallman, Timothy J, Adriaenssens, Evelien M, Hall, Neil, Kingsley, Robert A
Published in PLoS genetics (08.06.2020)
Published in PLoS genetics (08.06.2020)
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Journal Article
A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes
Jordan, Katherine W, Wang, Shichen, Lun, Yanni, Gardiner, Laura-Jayne, MacLachlan, Ron, Hucl, Pierre, Wiebe, Krysta, Wong, Debbie, Forrest, Kerrie L, Sharpe, Andrew G, Sidebottom, Christine Hd, Hall, Neil, Toomajian, Christopher, Close, Timothy, Dubcovsky, Jorge, Akhunova, Alina, Talbert, Luther, Bansal, Urmil K, Bariana, Harbans S, Hayden, Matthew J, Pozniak, Curtis, Jeddeloh, Jeffrey A, Hall, Anthony, Akhunov, Eduard
Published in Genome Biology (26.02.2015)
Published in Genome Biology (26.02.2015)
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Journal Article
Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture
Gilroy, Rachel, Ravi, Anuradha, Getino, Maria, Pursley, Isabella, Horton, Daniel L, Alikhan, Nabil-Fareed, Baker, Dave, Gharbi, Karim, Hall, Neil, Watson, Mick, Adriaenssens, Evelien M, Foster-Nyarko, Ebenezer, Jarju, Sheikh, Secka, Arss, Antonio, Martin, Oren, Aharon, Chaudhuri, Roy R, La Ragione, Roberto, Hildebrand, Falk, Pallen, Mark J
Published in PeerJ (San Francisco, CA) (06.04.2021)
Published in PeerJ (San Francisco, CA) (06.04.2021)
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Identification of oligo-adenylated small RNAs in the parasite Entamoeba and a potential role for small RNA control
Zhang, Hanbang, Ehrenkaufer, Gretchen M, Hall, Neil, Singh, Upinder
Published in BMC genomics (09.12.2020)
Published in BMC genomics (09.12.2020)
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Journal Article
The genomic epidemiology of shigellosis in South Africa
Stenhouse, George E., Keddy, Karen H., Bengtsson, Rebecca J., Hall, Neil, Smith, Anthony M., Thomas, Juno, Iturriza-Gómara, Miren, Baker, Kate S.
Published in Nature communications (24.11.2023)
Published in Nature communications (24.11.2023)
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Journal Article
Brain and spinal stimulation therapies for phantom limb pain: a systematic review
Corbett, Mark, South, Emily, Harden, Melissa, Eldabe, Sam, Pereira, Erlick, Sedki, Imad, Hall, Neil, Woolacott, Nerys
Published in Health technology assessment (Winchester, England) (01.11.2018)
Published in Health technology assessment (Winchester, England) (01.11.2018)
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Journal Article
Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes
Richards, Thomas A, Soanes, Darren M, Jones, Meredith D. M, Vasieva, Olga, Leonard, Guy, Paszkiewicz, Konrad, Foster, Peter G, Hall, Neil, Talbot, Nicholas J
Published in Proceedings of the National Academy of Sciences - PNAS (13.09.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (13.09.2011)
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Journal Article
Hidden variation in polyploid wheat drives local adaptation
Gardiner, Laura-Jayne, Joynson, Ryan, Omony, Jimmy, Rusholme-Pilcher, Rachel, Olohan, Lisa, Lang, Daniel, Bai, Caihong, Hawkesford, Malcolm, Salt, David, Spannagl, Manuel, Mayer, Klaus F X, Kenny, John, Bevan, Michael, Hall, Neil, Hall, Anthony
Published in Genome research (01.09.2018)
Published in Genome research (01.09.2018)
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Journal Article
Dissecting the molecular diversity and commonality of bovine and human treponemes identifies key survival and adhesion mechanisms
Staton, Gareth J, Clegg, Simon R, Ainsworth, Stuart, Armstrong, Stuart, Carter, Stuart D, Radford, Alan D, Darby, Alistair, Wastling, Jonathan, Hall, Neil, Evans, Nicholas J
Published in PLoS pathogens (29.03.2021)
Published in PLoS pathogens (29.03.2021)
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