FlyWire: online community for whole-brain connectomics
Dorkenwald, Sven, McKellar, Claire E., Macrina, Thomas, Kemnitz, Nico, Lee, Kisuk, Lu, Ran, Wu, Jingpeng, Popovych, Sergiy, Mitchell, Eric, Nehoran, Barak, Jia, Zhen, Bae, J. Alexander, Mu, Shang, Ih, Dodam, Castro, Manuel, Ogedengbe, Oluwaseun, Halageri, Akhilesh, Kuehner, Kai, Sterling, Amy R., Ashwood, Zoe, Zung, Jonathan, Brittain, Derrick, Collman, Forrest, Schneider-Mizell, Casey, Jordan, Chris, Silversmith, William, Baker, Christa, Deutsch, David, Encarnacion-Rivera, Lucas, Kumar, Sandeep, Burke, Austin, Bland, Doug, Gager, Jay, Hebditch, James, Koolman, Selden, Moore, Merlin, Morejohn, Sarah, Silverman, Ben, Willie, Kyle, Willie, Ryan, Yu, Szi-chieh, Murthy, Mala, Seung, H. Sebastian
Published in Nature methods (01.01.2022)
Published in Nature methods (01.01.2022)
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Journal Article
The neural basis for a persistent internal state in Drosophila females
Deutsch, David, Pacheco, Diego, Encarnacion-Rivera, Lucas, Pereira, Talmo, Fathy, Ramie, Clemens, Jan, Girardin, Cyrille, Calhoun, Adam, Ireland, Elise, Burke, Austin, Dorkenwald, Sven, McKellar, Claire, Macrina, Thomas, Lu, Ran, Lee, Kisuk, Kemnitz, Nico, Ih, Dodam, Castro, Manuel, Halageri, Akhilesh, Jordan, Chris, Silversmith, William, Wu, Jingpeng, Seung, H Sebastian, Murthy, Mala
Published in eLife (23.11.2020)
Published in eLife (23.11.2020)
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Journal Article
Connectomic reconstruction of a female Drosophila ventral nerve cord
Azevedo, Anthony, Lesser, Ellen, Phelps, Jasper S., Mark, Brandon, Elabbady, Leila, Kuroda, Sumiya, Sustar, Anne, Moussa, Anthony, Khandelwal, Avinash, Dallmann, Chris J., Agrawal, Sweta, Lee, Su-Yee J., Pratt, Brandon, Cook, Andrew, Skutt-Kakaria, Kyobi, Gerhard, Stephan, Lu, Ran, Kemnitz, Nico, Lee, Kisuk, Halageri, Akhilesh, Castro, Manuel, Ih, Dodam, Gager, Jay, Tammam, Marwan, Dorkenwald, Sven, Collman, Forrest, Schneider-Mizell, Casey, Brittain, Derrick, Jordan, Chris S., Dickinson, Michael, Pacureanu, Alexandra, Seung, H. Sebastian, Macrina, Thomas, Lee, Wei-Chung Allen, Tuthill, John C.
Published in Nature (London) (11.07.2024)
Published in Nature (London) (11.07.2024)
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Synaptic architecture of leg and wing premotor control networks in Drosophila
Lesser, Ellen, Azevedo, Anthony W., Phelps, Jasper S., Elabbady, Leila, Cook, Andrew, Syed, Durafshan Sakeena, Mark, Brandon, Kuroda, Sumiya, Sustar, Anne, Moussa, Anthony, Dallmann, Chris J., Agrawal, Sweta, Lee, Su-Yee J., Pratt, Brandon, Skutt-Kakaria, Kyobi, Gerhard, Stephan, Lu, Ran, Kemnitz, Nico, Lee, Kisuk, Halageri, Akhilesh, Castro, Manuel, Ih, Dodam, Gager, Jay, Tammam, Marwan, Dorkenwald, Sven, Collman, Forrest, Schneider-Mizell, Casey, Brittain, Derrick, Jordan, Chris S., Macrina, Thomas, Dickinson, Michael, Lee, Wei-Chung Allen, Tuthill, John C.
Published in Nature (London) (11.07.2024)
Published in Nature (London) (11.07.2024)
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Journal Article
Synaptic architecture of leg and wing premotor control networks in Drosophila
Lesser, Ellen, Azevedo, Anthony W, Phelps, Jasper S, Elabbady, Leila, Cook, Andrew, Sakeena Syed, Durafshan, Mark, Brandon, Kuroda, Sumiya, Sustar, Anne, Moussa, Anthony, Dallmann, Chris J, Agrawal, Sweta, Lee, Su-Yee J, Pratt, Brandon, Skutt-Kakaria, Kyobi, Gerhard, Stephan, Lu, Ran, Kemnitz, Nico, Lee, Kisuk, Halageri, Akhilesh, Castro, Manuel, Ih, Dodam, Gager, Jay, Tammam, Marwan, Dorkenwald, Sven, Collman, Forrest, Schneider-Mizell, Casey, Brittain, Derrick, Jordan, Chris S, Macrina, Thomas, Dickinson, Michael, Lee, Wei-Chung Allen, Tuthill, John C
Published in bioRxiv (28.04.2024)
Published in bioRxiv (28.04.2024)
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Functional connectomics reveals general wiring rule in mouse visual cortex
Ding, Zhuokun, Fahey, Paul G, Papadopoulos, Stelios, Wang, Eric Y, Celii, Brendan, Papadopoulos, Christos, Chang, Andersen, Kunin, Alexander B, Tran, Dat, Fu, Jiakun, Ding, Zhiwei, Patel, Saumil, Ntanavara, Lydia, Froebe, Rachel, Ponder, Kayla, Muhammad, Taliah, Bae, J Alexander, Bodor, Agnes L, Brittain, Derrick, Buchanan, JoAnn, Bumbarger, Daniel J, Castro, Manuel A, Cobos, Erick, Dorkenwald, Sven, Elabbady, Leila, Halageri, Akhilesh, Jia, Zhen, Jordan, Chris, Kapner, Dan, Kemnitz, Nico, Kinn, Sam, Lee, Kisuk, Li, Kai, Lu, Ran, Macrina, Thomas, Mahalingam, Gayathri, Mitchell, Eric, Mondal, Shanka Subhra, Mu, Shang, Nehoran, Barak, Popovych, Sergiy, Schneider-Mizell, Casey M, Silversmith, William, Takeno, Marc, Torres, Russel, Turner, Nicholas L, Wong, William, Wu, Jingpeng, Yin, Wenjing, Yu, Szi-Chieh, Yatsenko, Dimitri, Froudarakis, Emmanouil, Sinz, Fabian, Josić, Krešimir, Rosenbaum, Robert, Seung, H Sebastian, Collman, Forrest, da Costa, Nuno Maçarico, Reid, R Clay, Walker, Edgar Y, Pitkow, Xaq, Reimer, Jacob, Tolias, Andreas S
Published in bioRxiv (14.10.2024)
Published in bioRxiv (14.10.2024)
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Journal Article
NEURD offers automated proofreading and feature extraction for connectomics
Celii, Brendan, Papadopoulos, Stelios, Ding, Zhuokun, Fahey, Paul G, Wang, Eric, Papadopoulos, Christos, Kunin, Alexander, Patel, Saumil, Bae, J Alexander, Bodor, Agnes L, Brittain, Derrick, Buchanan, JoAnn, Bumbarger, Daniel J, Castro, Manuel A, Cobos, Erick, Dorkenwald, Sven, Elabbady, Leila, Halageri, Akhilesh, Jia, Zhen, Jordan, Chris, Kapner, Dan, Kemnitz, Nico, Kinn, Sam, Lee, Kisuk, Li, Kai, Lu, Ran, Macrina, Thomas, Mahalingam, Gayathri, Mitchell, Eric, Mondal, Shanka Subhra, Mu, Shang, Nehoran, Barak, Popovych, Sergiy, Schneider-Mizell, Casey M, Silversmith, William, Takeno, Marc, Torres, Russel, Turner, Nicholas L, Wong, William, Wu, Jingpeng, Yu, Szi-Chieh, Yin, Wenjing, Xenes, Daniel, Kitchell, Lindsey M, Rivlin, Patricia K, Rose, Victoria A, Bishop, Caitlyn A, Wester, Brock, Froudarakis, Emmanouil, Walker, Edgar Y, Sinz, Fabian H, Seung, H Sebastian, Collman, Forrest, da Costa, Nuno Maçarico, Reid, R Clay, Pitkow, Xaq, Tolias, Andreas S, Reimer, Jacob
Published in bioRxiv (23.09.2024)
Published in bioRxiv (23.09.2024)
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Journal Article
Cell-type-specific inhibitory circuitry from a connectomic census of mouse visual cortex
Schneider-Mizell, Casey M, Bodor, Agnes L, Brittain, Derrick, Buchanan, JoAnn, Bumbarger, Daniel J, Elabbady, Leila, Gamlin, Clare, Kapner, Daniel, Kinn, Sam, Mahalingam, Gayathri, Seshamani, Sharmishtaa, Suckow, Shelby, Takeno, Marc, Torres, Russel, Yin, Wenjing, Dorkenwald, Sven, Bae, J Alexander, Castro, Manuel A, Halageri, Akhilesh, Jia, Zhen, Jordan, Chris, Kemnitz, Nico, Lee, Kisuk, Li, Kai, Lu, Ran, Macrina, Thomas, Mitchell, Eric, Mondal, Shanka Subhra, Mu, Shang, Nehoran, Barak, Popovych, Sergiy, Silversmith, William, Turner, Nicholas L, Wong, William, Wu, Jingpeng, Reimer, Jacob, Tolias, Andreas S, Seung, H Sebastian, Reid, R Clay, Collman, Forrest, Maçarico da Costa, Nuno
Published in bioRxiv (06.01.2024)
Published in bioRxiv (06.01.2024)
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CAVE: Connectome Annotation Versioning Engine
Dorkenwald, Sven, Schneider-Mizell, Casey M, Brittain, Derrick, Halageri, Akhilesh, Jordan, Chris, Kemnitz, Nico, Castro, Manual A, Silversmith, William, Maitin-Shephard, Jeremy, Troidl, Jakob, Pfister, Hanspeter, Gillet, Valentin, Xenes, Daniel, Bae, J Alexander, Bodor, Agnes L, Buchanan, JoAnn, Bumbarger, Daniel J, Elabbady, Leila, Jia, Zhen, Kapner, Daniel, Kinn, Sam, Lee, Kisuk, Li, Kai, Lu, Ran, Macrina, Thomas, Mahalingam, Gayathri, Mitchell, Eric, Mondal, Shanka Subhra, Mu, Shang, Nehoran, Barak, Popovych, Sergiy, Takeno, Marc, Torres, Russel, Turner, Nicholas L, Wong, William, Wu, Jingpeng, Yin, Wenjing, Yu, Szi-Chieh, Reid, R Clay, da Costa, Nuno Maçarico, Seung, H Sebastian, Collman, Forrest
Published in bioRxiv (28.07.2023)
Published in bioRxiv (28.07.2023)
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Journal Article
Neuronal wiring diagram of an adult brain
Dorkenwald, Sven, Matsliah, Arie, Sterling, Amy R, Schlegel, Philipp, Yu, Szi-Chieh, McKellar, Claire E, Lin, Albert, Costa, Marta, Eichler, Katharina, Yin, Yijie, Silversmith, Will, Schneider-Mizell, Casey, Jordan, Chris S, Brittain, Derrick, Halageri, Akhilesh, Kuehner, Kai, Ogedengbe, Oluwaseun, Morey, Ryan, Gager, Jay, Kruk, Krzysztof, Perlman, Eric, Yang, Runzhe, Deutsch, David, Bland, Doug, Sorek, Marissa, Lu, Ran, Macrina, Thomas, Lee, Kisuk, Bae, J Alexander, Mu, Shang, Nehoran, Barak, Mitchell, Eric, Popovych, Sergiy, Wu, Jingpeng, Jia, Zhen, Castro, Manuel, Kemnitz, Nico, Ih, Dodam, Bates, Alexander Shakeel, Eckstein, Nils, Funke, Jan, Collman, Forrest, Bock, Davi D, Jefferis, Gregory S X E, Seung, H Sebastian, Murthy, Mala
Published in bioRxiv (11.07.2023)
Published in bioRxiv (11.07.2023)
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Journal Article
Functional connectomics spanning multiple areas of mouse visual cortex
Consortium, Microns, Bodor, Agnes L, Halageri, Akhilesh, Sterling, Amy, Tolias, Andreas S, Ramos, Anthony, Barak Nehoran, Silverman, Ben, Celii, Brendan, Smith, Cameron L, Schneider-Mizell, Casey M, Jordan, Chris, Xu, Chris, Papadopoulos, Christos, Gamlin, Clare, Kapner, Dan, Bumbarger, Daniel J, Brittain, Derrick, Yatsenko, Dimitri, Walker, Edgar Y, Miranda, Elanine, Froudarakis, Emmanouil, Mitchell, Eric, Cobos, Eric, Sinz, Fabian H, Ye, Fei, Collman, rest, Mahalingam, Gayathri, Williams, Grace, Seung, H Sebastian, Bae, J Alexander, Reimer, Jacob, Hebditch, James, Gager, Jay, Wu, Jingpeng, Buchanan, Joann, Kuehner, Kai, Li, Kai, Lee, Kisuk, Kyle, Willie, Elabbady, Leila, Mahaly Baptiste, Castro, Manuel A, Takeno, Marc, Moore, Merlin, Turner, Nicholas L, Kemnitz, Nico, Nuno Macarico Da Costa, Ogedengbe, Oluwaseun, Fahey, Paul G, Reid, R Clay, Lu, Ran, Yang, Runzhe, Torres, Russel, Ryan, Willie, Kinn, Sam, Williams, Sarah, Mcreynolds, Sarah, Patel, Saumil, Selden Koolman, Popovych, Sergiy, Shang Mu, Mondal, Shanka Subhra, Suckow, Shelby, Papadopoulos, Stelios, Dorkenwald, Sven, Yu, Szi-Chieh, Taliah Muhammad, Macrina, Thomas, Wang, Tianyu, Fliss, Tim, Yin, Wenjing, Silversmith, William, Wong, William, Pitkow, Xaq, Jia, Zhen, Tan, Zheng H
Published in bioRxiv (29.07.2021)
Published in bioRxiv (29.07.2021)
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Perisomatic Features Enable Efficient and Dataset Wide Cell-Type Classifications Across Large-Scale Electron Microscopy Volumes
Elabbady, Leila, Seshamani, Sharmishtaa, Shang Mu, Mahalingam, Gayathri, Schneider-Mizell, Casey M, Bodor, Agnes, Bae, J Alexander, Brittain, Derrick, Buchanan, Joann, Bumbarger, Daniel J, Castro, Manuel A, Dorkenwald, Sven, Halageri, Akhilesh, Jia, Zhen, Jordan, Chris, Kapner, Dan, Kemnitz, Nico, Kinn, Sam, Lee, Kisuk, Li, Kai, Lu, Ran, Macrina, Thomas, Mitchell, Eric, Mondal, Shanka Subhra, Barak Nehoran, Popovych, Sergiy, Silversmith, William, Takeno, Marc, Torres, Russel, Turner, Nicholas L, Wong, William, Wu, Jingpeng, Yin, Wenjing, Yu, Szi-Chieh, The Microns Consortium, Seung, H Sebastian, Reid, R Clay, Nuno Macarico Da Costa, Collman, rest
Published in bioRxiv (13.01.2024)
Published in bioRxiv (13.01.2024)
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Tools for comprehensive reconstruction and analysis of Drosophila motor circuits
Azevedo, Anthony W, Lesser, Ellen, Brandon, Mark, Phelps, Jasper S, Elabbady, Leila, Kuroda, Sumiya, Sustar, Anne E, Moussa, Anthony J, Kandelwal, Avinash, Dallmann, Chris J, Agrawal, Sweta, Lee, Su-Yee J, Pratt, Brandon G, Cook, Andrew, Skutt-Kakari, Kyobi, Stephan, Gerhard, Lu, Ran, Kemnitz, Nico, Lee, Kisuk, Halageri, Akhilesh, Castro, Manuel, Ih, Dodam, Gager, Jay, Tammam, Marwan, Dorkenwald, Sven, Collman, rest C, Schneider-Mizell, Casey M, Brittain, Derrick, Jordan, Chris S, Dickinson, Michael H, Pacureanu, Alexandra, Seung, H Sebastian, Macrina, Thomas, Wei-Chung, Allen Lee, Tuthill, John C
Published in bioRxiv (15.12.2022)
Published in bioRxiv (15.12.2022)
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Large-scale unsupervised discovery of excitatory morphological cell types in mouse visual cortex
Weis, Marissa A, Papadopoulos, Stelios, Hansel, Laura, Lueddecke, Timo, Celii, Brendan, Fahey, Paul G, Bae, J Alexander, Bodor, Agnes L, Brittain, Derrick, Buchanan, Joann, Bumbarger, Daniel J, Castro, Manuel A, Cobos, Erick, Collman, rest, Da Costa, Nuno M, Dorkenwald, Sven, Elabbady, Leila, Froudarakis, Emmanouil, Halageri, Akhilesh, Jia, Zhen, Jordan, Chris, Kapner, Dan, Kemnitz, Nico, Kinn, Sam, Lee, Kisuk, Li, Kai, Lu, Ran, Macrina, Thomas, Mahalingam, Gayathri, Mitchell, Eric, Mondal, Shanka S, Shang Mu, Barak Nehoran, Patel, Saumil, Pitkow, Xaq, Popovych, Sergiy, Reid, R Clay, Schneider-Mizell, Casey M, Seung, H Sebastian, Silversmith, William, Sinz, Fabian H, Takeno, Marc, Torres, Russel, Turner, Nicholas L, Wong, William, Wu, Jingpeng, Yin, Wenjing, Yu, Szi-Chieh, Reimer, Jacob, Tolias, Andreas S, Ecker, Alexander S
Published in bioRxiv (22.12.2022)
Published in bioRxiv (22.12.2022)
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Petascale neural circuit reconstruction: automated methods
Macrina, Thomas, Lee, Kisuk, Lu, Ran, Turner, Nicholas L, Wu, Jingpeng, Popovych, Sergiy, Silversmith, William William, Kemnitz, Nico, Bae, J Alexander, Castro, Manuel A, Dorkenwald, Sven, Halageri, Akhilesh, Jia, Zhen, Jordan, Chris, Li, Kai, Mitchell, Eric, Mondal, Shanka Subhra, Shang Mu, Barak Nehoran, Wong, William, Yu, Szi-Chieh, Bodor, Agnes L, Brittain, Derrick, Buchanan, Joann, Bumbarger, Daniel J, Cobos, Erick, Collman, rest, Elabbady, Leila, Fahey, Paul G, Froudarakis, Emmanouil, Kapner, Daniel, Kinn, Sam, Mahalingam, Gayathri, Papadopoulos, Stelios, Patel, Saumil, Schneider-Mizell, Casey M, Sinz, Fabian H, Takeno, Marc, Torres, Russel, Yin, Wenjing, Pitkow, Xaq, Reimer, Jacob, Tolias, Andreas S, Reid, R Clay, Nuno Maçarico Da Costa, Seung, H Sebastian
Published in bioRxiv (05.08.2021)
Published in bioRxiv (05.08.2021)
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The Neural Basis for a Persistent Internal State in Drosophila Females
Deutsch, David, Pacheco, Diego Armando, Lucas Jose Encarnacion-Rivera, Pereira, Talmo, Fathy, Ramie, Calhoun, Adam John, Eireland, Elise Claire, Austin Taylor Burke, Dorkenwald, Sven, Mckellar, Claire, Macrina, Thomas, Lu, Ran, Lee, Kisuk, Kemnitz, Nico, Ih, Dodam, Castro, Manuel, Halageri, Akhilesh, Jordan, Chris, Silversmith, William, Wu, Jingpeng, Hyunjune, Sebastian Seung, Murthy, Mala
Published in bioRxiv (13.02.2020)
Published in bioRxiv (13.02.2020)
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