High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis
Chen, Eric C. H., Morin, Emmanuelle, Beaudet, Denis, Noel, Jessica, Yildirir, Gokalp, Ndikumana, Steve, Charron, Philippe, St‐Onge, Camille, Giorgi, John, Krüger, Manuela, Marton, Timea, Ropars, Jeanne, Grigoriev, Igor V., Hainaut, Matthieu, Henrissat, Bernard, Roux, Christophe, Martin, Francis, Corradi, Nicolas
Published in The New phytologist (01.12.2018)
Published in The New phytologist (01.12.2018)
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Journal Article
Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi
Hacquard, Stéphane, Kracher, Barbara, Hiruma, Kei, Münch, Philipp C, Garrido-Oter, Ruben, Thon, Michael R, Weimann, Aaron, Damm, Ulrike, Dallery, Jean-Félix, Hainaut, Matthieu, Henrissat, Bernard, Lespinet, Olivier, Sacristán, Soledad, Ver Loren van Themaat, Emiel, Kemen, Eric, McHardy, Alice C, Schulze-Lefert, Paul, O'Connell, Richard J
Published in Nature communications (06.05.2016)
Published in Nature communications (06.05.2016)
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Journal Article
Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi
Knapp, Dániel G, Németh, Julianna B, Barry, Kerrie, Hainaut, Matthieu, Henrissat, Bernard, Johnson, Jenifer, Kuo, Alan, Lim, Joanne Hui Ping, Lipzen, Anna, Nolan, Matt, Ohm, Robin A, Tamás, László, Grigoriev, Igor V, Spatafora, Joseph W, Nagy, László G, Kovács, Gábor M
Published in Scientific reports (20.04.2018)
Published in Scientific reports (20.04.2018)
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Journal Article
Broad Genomic Sampling Reveals a Smut Pathogenic Ancestry of the Fungal Clade Ustilaginomycotina
Kijpornyongpan, Teeratas, Mondo, Stephen J, Barry, Kerrie, Sandor, Laura, Lee, Juna, Lipzen, Anna, Pangilinan, Jasmyn, LaButti, Kurt, Hainaut, Matthieu, Henrissat, Bernard, Grigoriev, Igor V, Spatafora, Joseph W, Aime, M Catherine
Published in Molecular biology and evolution (01.08.2018)
Published in Molecular biology and evolution (01.08.2018)
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Journal Article
Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters
Dallery, Jean-Félix, Lapalu, Nicolas, Zampounis, Antonios, Pigné, Sandrine, Luyten, Isabelle, Amselem, Joëlle, Wittenberg, Alexander H J, Zhou, Shiguo, de Queiroz, Marisa V, Robin, Guillaume P, Auger, Annie, Hainaut, Matthieu, Henrissat, Bernard, Kim, Ki-Tae, Lee, Yong-Hwan, Lespinet, Olivier, Schwartz, David C, Thon, Michael R, O'Connell, Richard J
Published in BMC genomics (29.08.2017)
Published in BMC genomics (29.08.2017)
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Journal Article
Comparative analysis of basidiomycete transcriptomes reveals a core set of expressed genes encoding plant biomass degrading enzymes
Peng, Mao, Aguilar-Pontes, Maria Victoria, Hainaut, Matthieu, Henrissat, Bernard, Hildén, Kristiina, Mäkelä, Miia R., de Vries, Ronald P.
Published in Fungal genetics and biology (01.03.2018)
Published in Fungal genetics and biology (01.03.2018)
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Journal Article
Globally distributed root endophyte Phialocephala subalpina links pathogenic and saprophytic lifestyles
Schlegel, Markus, Münsterkötter, Martin, Güldener, Ulrich, Bruggmann, Rémy, Duò, Angelo, Hainaut, Matthieu, Henrissat, Bernard, Sieber, Christian M K, Hoffmeister, Dirk, Grünig, Christoph R
Published in BMC genomics (09.12.2016)
Published in BMC genomics (09.12.2016)
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Journal Article
A parts list for fungal cellulosomes revealed by comparative genomics
Haitjema, Charles H, Gilmore, Sean P, Henske, John K, Solomon, Kevin V, de Groot, Randall, Kuo, Alan, Mondo, Stephen J, Salamov, Asaf A, LaButti, Kurt, Zhao, Zhiying, Chiniquy, Jennifer, Barry, Kerrie, Brewer, Heather M, Purvine, Samuel O, Wright, Aaron T, Hainaut, Matthieu, Boxma, Brigitte, van Alen, Theo, Hackstein, Johannes H P, Henrissat, Bernard, Baker, Scott E, Grigoriev, Igor V, O'Malley, Michelle A
Published in Nature microbiology (30.05.2017)
Published in Nature microbiology (30.05.2017)
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Journal Article
Genome Assembly of the Fungus Cochliobolus miyabeanus, and Transcriptome Analysis during Early Stages of Infection on American Wildrice (Zizania palustris L.)
Castell-Miller, Claudia V, Gutierrez-Gonzalez, Juan J, Tu, Zheng Jin, Bushley, Kathryn E, Hainaut, Matthieu, Henrissat, Bernard, Samac, Deborah A
Published in PloS one (02.06.2016)
Published in PloS one (02.06.2016)
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Journal Article
Draft Genome Sequence of the Deep-Sea Ascomycetous Filamentous Fungus Cadophora malorum Mo12 from the Mid-Atlantic Ridge Reveals Its Biotechnological Potential
Rédou, Vanessa, Kumar, Abhishek, Hainaut, Matthieu, Henrissat, Bernard, Record, Eric, Barbier, Georges, Burgaud, Gaëtan
Published in Genome announcements (Washington, DC) (07.07.2016)
Published in Genome announcements (Washington, DC) (07.07.2016)
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Journal Article
Erratum: Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi
Hacquard, Stéphane, Kracher, Barbara, Hiruma, Kei, Münch, Philipp C, Garrido-Oter, Ruben, Thon, Michael R, Weimann, Aaron, Damm, Ulrike, Dallery, Jean-Félix, Hainaut, Matthieu, Henrissat, Bernard, Lespinet, Olivier, Sacristán, Soledad, van Themaat, Emiel Ver Loren, Kemen, Eric, McHardy, Alice C, Schulze-Lefert, Paul, O'Connell, Richard J
Published in Nature communications (29.09.2016)
Published in Nature communications (29.09.2016)
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Journal Article
Draft Genome Sequence of the Deep-Sea Basidiomycetous Yeast Cryptococcus sp. Strain Mo29 Reveals Its Biotechnological Potential
Rédou, Vanessa, Kumar, Abhishek, Hainaut, Matthieu, Henrissat, Bernard, Record, Eric, Barbier, Georges, Burgaud, Gaëtan
Published in Genome announcements (Washington, DC) (07.07.2016)
Published in Genome announcements (Washington, DC) (07.07.2016)
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Journal Article
Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2
Miettinen, Otto, Riley, Robert, Barry, Kerrie, Cullen, Dan, de Vries, Ronald P, Hainaut, Matthieu, Hatakka, Annele, Henrissat, Bernard, Hildén, Kristiina, Kuo, Rita, LaButti, Kurt, Lipzen, Anna, Mäkelä, Miia R, Sandor, Laura, Spatafora, Joseph W, Grigoriev, Igor V, Hibbett, David S
Published in Genome announcements (Washington, DC) (27.10.2016)
Published in Genome announcements (Washington, DC) (27.10.2016)
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Journal Article
Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass
Miyauchi, Shingo, Rancon, Anaïs, Drula, Elodie, Hage, Hayat, Chaduli, Delphine, Favel, Anne, Grisel, Sacha, Henrissat, Bernard, Herpoël-Gimbert, Isabelle, Ruiz-Dueñas, Francisco J, Chevret, Didier, Hainaut, Matthieu, Lin, Junyan, Wang, Mei, Pangilinan, Jasmyn, Lipzen, Anna, Lesage-Meessen, Laurence, Navarro, David, Riley, Robert, Grigoriev, Igor V, Zhou, Simeng, Raouche, Sana, Rosso, Marie-Noëlle
Published in Biotechnology for biofuels (23.07.2018)
Published in Biotechnology for biofuels (23.07.2018)
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Journal Article
A bioinformatics analysis of 3400 lytic polysaccharide oxidases from family AA9
Lenfant, Nicolas, Hainaut, Matthieu, Terrapon, Nicolas, Drula, Elodie, Lombard, Vincent, Henrissat, Bernard
Published in Carbohydrate research (07.08.2017)
Published in Carbohydrate research (07.08.2017)
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Journal Article
Rapid Divergence of Genome Architectures Following the Origin of an Ectomycorrhizal Symbiosis in the Genus Amanita
Hess, Jaqueline, Skrede, Inger, Chaib De Mares, Maryam, Hainaut, Matthieu, Henrissat, Bernard, Pringle, Anne
Published in Molecular biology and evolution (01.11.2018)
Published in Molecular biology and evolution (01.11.2018)
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Journal Article
Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus
de Vries, Ronald P, Riley, Robert, Wiebenga, Ad, Aguilar-Osorio, Guillermo, Amillis, Sotiris, Uchima, Cristiane Akemi, Asadollahi, Mojtaba, Askin, Marion, Barry, Kerrie, Battaglia, Evy, Bayram, Özgür, Benocci, Tiziano, Braus-Stromeyer, Susanna A, Caldana, Camila, Cánovas, David, Cerqueira, Gustavo C, Chen, Fusheng, Clum, Alicia, Dos Santos, Renato Augusto Corrêa, Damásio, André Ricardo de Lima, Diallinas, George, Emri, Tamás, Fekete, Erzsébet, Flipphi, Michel, Freyberg, Susanne, Habgood, Rob, Hainaut, Matthieu, Harispe, María Laura, Henrissat, Bernard, Hildén, Kristiina S, Hope, Ryan, Hossain, Abeer, Karabika, Eugenia, Karaffa, Levente, Karányi, Zsolt, Kraševec, Nada, Kuo, Alan, Kusch, Harald, LaButti, Kurt, Lagendijk, Ellen L, Lapidus, Alla, Levasseur, Anthony, Lindquist, Erika, Lipzen, Anna, MacCabe, Andrew, Melin, Petter, Meyer, Vera, Mielnichuk, Natalia, Miskei, Márton, Molnár, Ákos P, Mulé, Giuseppina, Ngan, Chew Yee, Orejas, Margarita, Orosz, Erzsébet, Ouedraogo, Jean Paul, Overkamp, Karin M, Park, Hee-Soo, Perrone, Giancarlo, Ram, Arthur F J, Ramón, Ana, Rauscher, Stefan, Record, Eric, Riaño-Pachón, Diego Mauricio, Röhrig, Julian, Ruller, Roberto, Salamov, Asaf, Salih, Nadhira S, Samson, Rob A, Sándor, Erzsébet, Sanguinetti, Manuel, Schütze, Tabea, Sepčić, Kristina, Shelest, Ekaterina, Sherlock, Gavin, Squina, Fabio M, Sun, Hui, Susca, Antonia, Todd, Richard B, Tsang, Adrian, Unkles, Shiela E, van de Wiele, Nathalie, van Rossen-Uffink, Diana, Oliveira, Juliana Velasco de Castro, Visser, Jaap, Yu, Jae-Hyuk, Zhou, Miaomiao, Archer, David B, Baker, Scott E, Benoit, Isabelle, Braus, Gerhard H, Fischer, Reinhard, Frisvad, Jens C, Goldman, Gustavo H, Houbraken, Jos, Oakley, Berl, Pócsi, István, Scazzocchio, Claudio, Seiboth, Bernhard, Wortman, Jennifer, Grigoriev, Igor V
Published in Genome Biology (14.02.2017)
Published in Genome Biology (14.02.2017)
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Journal Article
Poplar carbohydrate‐active enzymes: whole‐genome annotation and functional analyses based on RNA expression data
Kumar, Vikash, Hainaut, Matthieu, Delhomme, Nicolas, Mannapperuma, Chanaka, Immerzeel, Peter, Street, Nathaniel R., Henrissat, Bernard, Mellerowicz, Ewa J.
Published in The Plant journal : for cell and molecular biology (01.08.2019)
Published in The Plant journal : for cell and molecular biology (01.08.2019)
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Journal Article
Comparative genomics of Rhizophagus irregularis, R. cerebriforme, R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina
Morin, Emmanuelle, Miyauchi, Shingo, San Clemente, Hélène, Chen, Eric C. H., Pelin, Adrian, de la Providencia, Ivan, Ndikumana, Steve, Beaudet, Denis, Hainaut, Mathieu, Drula, Elodie, Kuo, Alan, Tang, Nianwu, Roy, Sébastien, Viala, Julie, Henrissat, Bernard, Grigoriev, Igor V., Corradi, Nicolas, Roux, Christophe, Martin, Francis M.
Published in The New phytologist (01.05.2019)
Published in The New phytologist (01.05.2019)
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