InterPro in 2022
Paysan-Lafosse, Typhaine, Blum, Matthias, Chuguransky, Sara, Grego, Tiago, Pinto, Beatriz Lázaro, Salazar, Gustavo A, Bileschi, Maxwell L, Bork, Peer, Bridge, Alan, Colwell, Lucy, Gough, Julian, Haft, Daniel H, Letunić, Ivica, Marchler-Bauer, Aron, Mi, Huaiyu, Natale, Darren A, Orengo, Christine A, Pandurangan, Arun P, Rivoire, Catherine, Sigrist, Christian J A, Sillitoe, Ian, Thanki, Narmada, Thomas, Paul D, Tosatto, Silvio C E, Wu, Cathy H, Bateman, Alex
Published in Nucleic acids research (06.01.2023)
Published in Nucleic acids research (06.01.2023)
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Journal Article
AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence
Feldgarden, Michael, Brover, Vyacheslav, Gonzalez-Escalona, Narjol, Frye, Jonathan G., Haendiges, Julie, Haft, Daniel H., Hoffmann, Maria, Pettengill, James B., Prasad, Arjun B., Tillman, Glenn E., Tyson, Gregory H., Klimke, William
Published in Scientific reports (16.06.2021)
Published in Scientific reports (16.06.2021)
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Journal Article
Validating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolates
Feldgarden, Michael, Brover, Vyacheslav, Haft, Daniel H, Prasad, Arjun B, Slotta, Douglas J, Tolstoy, Igor, Tyson, Gregory H, Zhao, Shaohua, Hsu, Chih-Hao, McDermott, Patrick F, Tadesse, Daniel A, Morales, Cesar, Simmons, Mustafa, Tillman, Glenn, Wasilenko, Jamie, Folster, Jason P, Klimke, William
Published in Antimicrobial agents and chemotherapy (01.11.2019)
Published in Antimicrobial agents and chemotherapy (01.11.2019)
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Journal Article
The InterPro protein families and domains database: 20 years on
Blum, Matthias, Chang, Hsin-Yu, Chuguransky, Sara, Grego, Tiago, Kandasaamy, Swaathi, Mitchell, Alex, Nuka, Gift, Paysan-Lafosse, Typhaine, Qureshi, Matloob, Raj, Shriya, Richardson, Lorna, Salazar, Gustavo A, Williams, Lowri, Bork, Peer, Bridge, Alan, Gough, Julian, Haft, Daniel H, Letunic, Ivica, Marchler-Bauer, Aron, Mi, Huaiyu, Natale, Darren A, Necci, Marco, Orengo, Christine A, Pandurangan, Arun P, Rivoire, Catherine, Sigrist, Christian J A, Sillitoe, Ian, Thanki, Narmada, Thomas, Paul D, Tosatto, Silvio C E, Wu, Cathy H, Bateman, Alex, Finn, Robert D
Published in Nucleic Acids Research (08.01.2021)
Published in Nucleic Acids Research (08.01.2021)
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Journal Article
Web Resource
TIGRFAMs and Genome Properties in 2013
Haft, Daniel H, Selengut, Jeremy D, Richter, Roland A, Harkins, Derek, Basu, Malay K, Beck, Erin
Published in Nucleic acids research (01.01.2013)
Published in Nucleic acids research (01.01.2013)
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Journal Article
Evolution and classification of the CRISPR–Cas systems
Koonin, Eugene V, Makarova, Kira S, Haft, Daniel H, Barrangou, Rodolphe, Brouns, Stan J. J, Charpentier, Emmanuelle, Horvath, Philippe, Moineau, Sylvain, Mojica, Francisco J. M, Wolf, Yuri I, Yakunin, Alexander F, van der Oost, John
Published in Nature reviews. Microbiology (01.06.2011)
Published in Nature reviews. Microbiology (01.06.2011)
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Journal Article
RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation
Li, Wenjun, O’Neill, Kathleen R, Haft, Daniel H, DiCuccio, Michael, Chetvernin, Vyacheslav, Badretdin, Azat, Coulouris, George, Chitsaz, Farideh, Derbyshire, Myra K, Durkin, A Scott, Gonzales, Noreen R, Gwadz, Marc, Lanczycki, Christopher J, Song, James S, Thanki, Narmada, Wang, Jiyao, Yamashita, Roxanne A, Yang, Mingzhang, Zheng, Chanjuan, Marchler-Bauer, Aron, Thibaud-Nissen, Françoise
Published in Nucleic acids research (08.01.2021)
Published in Nucleic acids research (08.01.2021)
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Journal Article
RefSeq: an update on prokaryotic genome annotation and curation
Haft, Daniel H, DiCuccio, Michael, Badretdin, Azat, Brover, Vyacheslav, Chetvernin, Vyacheslav, O'Neill, Kathleen, Li, Wenjun, Chitsaz, Farideh, Derbyshire, Myra K, Gonzales, Noreen R, Gwadz, Marc, Lu, Fu, Marchler, Gabriele H, Song, James S, Thanki, Narmada, Yamashita, Roxanne A, Zheng, Chanjuan, Thibaud-Nissen, Françoise, Geer, Lewis Y, Marchler-Bauer, Aron, Pruitt, Kim D
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Journal Article
Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants
Makarova, Kira S., Wolf, Yuri I., Iranzo, Jaime, Shmakov, Sergey A., Alkhnbashi, Omer S., Brouns, Stan J. J., Charpentier, Emmanuelle, Cheng, David, Haft, Daniel H., Horvath, Philippe, Moineau, Sylvain, Mojica, Francisco J. M., Scott, David, Shah, Shiraz A., Siksnys, Virginijus, Terns, Michael P., Venclovas, Česlovas, White, Malcolm F., Yakunin, Alexander F., Yan, Winston, Zhang, Feng, Garrett, Roger A., Backofen, Rolf, van der Oost, John, Barrangou, Rodolphe, Koonin, Eugene V.
Published in Nature reviews. Microbiology (01.02.2020)
Published in Nature reviews. Microbiology (01.02.2020)
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Journal Article
An updated evolutionary classification of CRISPR–Cas systems
Makarova, Kira S., Wolf, Yuri I., Alkhnbashi, Omer S., Costa, Fabrizio, Shah, Shiraz A., Saunders, Sita J., Barrangou, Rodolphe, Brouns, Stan J. J., Charpentier, Emmanuelle, Haft, Daniel H., Horvath, Philippe, Moineau, Sylvain, Mojica, Francisco J. M., Terns, Rebecca M., Terns, Michael P., White, Malcolm F., Yakunin, Alexander F., Garrett, Roger A., van der Oost, John, Backofen, Rolf, Koonin, Eugene V.
Published in Nature reviews. Microbiology (01.11.2015)
Published in Nature reviews. Microbiology (01.11.2015)
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Journal Article
The InterPro protein families database: the classification resource after 15 years
Mitchell, Alex, Chang, Hsin-Yu, Daugherty, Louise, Fraser, Matthew, Hunter, Sarah, Lopez, Rodrigo, McAnulla, Craig, McMenamin, Conor, Nuka, Gift, Pesseat, Sebastien, Sangrador-Vegas, Amaia, Scheremetjew, Maxim, Rato, Claudia, Yong, Siew-Yit, Bateman, Alex, Punta, Marco, Attwood, Teresa K, Sigrist, Christian J A, Redaschi, Nicole, Rivoire, Catherine, Xenarios, Ioannis, Kahn, Daniel, Guyot, Dominique, Bork, Peer, Letunic, Ivica, Gough, Julian, Oates, Matt, Haft, Daniel, Huang, Hongzhan, Natale, Darren A, Wu, Cathy H, Orengo, Christine, Sillitoe, Ian, Mi, Huaiyu, Thomas, Paul D, Finn, Robert D
Published in Nucleic acids research (28.01.2015)
Published in Nucleic acids research (28.01.2015)
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Journal Article
Proposal for assignment of allele numbers for mobile colistin resistance (mcr) genes
Partridge, Sally R, Di Pilato, Vincenzo, Doi, Yohei, Feldgarden, Michael, Haft, Daniel H, Klimke, William, Kumar-Singh, Samir, Liu, Jian-Hua, Malhotra-Kumar, Surbhi, Prasad, Arjun, Rossolini, Gian Maria, Schwarz, Stefan, Shen, Jianzhong, Walsh, Timothy, Wang, Yang, Xavier, Basil Britto
Published in Journal of antimicrobial chemotherapy (01.10.2018)
Published in Journal of antimicrobial chemotherapy (01.10.2018)
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Journal Article