The multiple mechanisms that regulate p53 activity and cell fate
Hafner, Antonina, Bulyk, Martha L., Jambhekar, Ashwini, Lahav, Galit
Published in Nature reviews. Molecular cell biology (01.04.2019)
Published in Nature reviews. Molecular cell biology (01.04.2019)
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Journal Article
Visualizing DNA folding and RNA in embryos at single-cell resolution
Mateo, Leslie J., Murphy, Sedona E., Hafner, Antonina, Cinquini, Isaac S., Walker, Carly A., Boettiger, Alistair N.
Published in Nature (London) (01.04.2019)
Published in Nature (London) (01.04.2019)
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Journal Article
mSWI/SNF promotes Polycomb repression both directly and through genome-wide redistribution
Weber, Christopher M., Hafner, Antonina, Kirkland, Jacob G., Braun, Simon M. G., Stanton, Benjamin Z., Boettiger, Alistair N., Crabtree, Gerald R.
Published in Nature structural & molecular biology (01.06.2021)
Published in Nature structural & molecular biology (01.06.2021)
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Journal Article
A leukemia-protective germline variant mediates chromatin module formation via transcription factor nucleation
Llimos, Gerard, Gardeux, Vincent, Koch, Ute, Kribelbauer, Judith F., Hafner, Antonina, Alpern, Daniel, Pezoldt, Joern, Litovchenko, Maria, Russeil, Julie, Dainese, Riccardo, Moia, Riccardo, Mahmoud, Abdurraouf Mokhtar, Rossi, Davide, Gaidano, Gianluca, Plass, Christoph, Lutsik, Pavlo, Gerhauser, Clarissa, Waszak, Sebastian M., Boettiger, Alistair, Radtke, Freddy, Deplancke, Bart
Published in Nature communications (19.04.2022)
Published in Nature communications (19.04.2022)
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Journal Article
A Comprehensive Drosophila melanogaster Transcription Factor Interactome
Shokri, Leila, Inukai, Sachi, Hafner, Antonina, Weinand, Kathryn, Hens, Korneel, Vedenko, Anastasia, Gisselbrecht, Stephen S., Dainese, Riccardo, Bischof, Johannes, Furger, Edy, Feuz, Jean-Daniel, Basler, Konrad, Deplancke, Bart, Bulyk, Martha L.
Published in Cell reports (Cambridge) (16.04.2019)
Published in Cell reports (Cambridge) (16.04.2019)
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Journal Article
SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data
Lee, Lindsay, Yu, Hongyu, Jia, Bojing Blair, Jussila, Adam, Zhu, Chenxu, Chen, Jiawen, Xie, Liangqi, Hafner, Antonina, Mishra, Shreya, Wang, Duan Dennis, Strambio-De-Castillia, Caterina, Boettiger, Alistair, Ren, Bing, Li, Yun, Hu, Ming
Published in Nature communications (12.08.2023)
Published in Nature communications (12.08.2023)
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Journal Article
Identification of universal and cell-type specific p53 DNA binding
Hafner, Antonina, Kublo, Lyubov, Tsabar, Michael, Lahav, Galit, Stewart-Ornstein, Jacob
Published in BMC cell biology (18.02.2020)
Published in BMC cell biology (18.02.2020)
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Journal Article
Loop stacking organizes genome folding from TADs to chromosomes
Hafner, Antonina, Park, Minhee, Berger, Scott E., Murphy, Sedona E., Nora, Elphège P., Boettiger, Alistair N.
Published in Molecular cell (04.05.2023)
Published in Molecular cell (04.05.2023)
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Journal Article
Quantifying the Central Dogma in the p53 Pathway in Live Single Cells
Hafner, Antonina, Reyes, José, Stewart-Ornstein, Jacob, Tsabar, Michael, Jambhekar, Ashwini, Lahav, Galit
Published in Cell systems (24.06.2020)
Published in Cell systems (24.06.2020)
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Journal Article
Abstract LB-101: Combined p53 dynamics and post-translational modifications determine subsequent protein expression and cell fate
Lu, Dan, Holton, Kristina, Hafner, Antonina, DeHart, Caroline, Sikora, Jacek, Zhou, Houjiang, Jambhekar, Ashwini, Kelleher, Neil, Gunawardena, Jeremy, Lahav, Galit
Published in Cancer research (Chicago, Ill.) (01.07.2019)
Published in Cancer research (Chicago, Ill.) (01.07.2019)
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Journal Article
Super-enhancer interactomes from single cells link clustering and transcription
Le, Derek J, Hafner, Antonina, Gaddam, Sadhana, Wang, Kevin C, Boettiger, Alistair N
Published in bioRxiv (10.05.2024)
Published in bioRxiv (10.05.2024)
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Journal Article
Single-cell chromatin state transitions during epigenetic memory formation
Fujimori, Taihei, Rios-Martinez, Carolina, Thurm, Abby R, Hinks, Michaela M, Doughty, Benjamin R, Sinha, Joydeb, Le, Derek, Hafner, Antonina, Greenleaf, William J, Boettiger, Alistair N, Bintu, Lacramioara
Published in bioRxiv (05.10.2023)
Published in bioRxiv (05.10.2023)
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Journal Article
Loop stacking organizes genome folding from TADs to chromosomes
Hafner, Antonina, Park, Minhee, Berger, Scott Evan, Elphège Nora, Alistair Nicol Boettiger
Published in bioRxiv (29.07.2022)
Published in bioRxiv (29.07.2022)
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Paper
Identification of universal and cell type specific p53 DNA binding
Hafner, Antonina, Kublo, Lyubov, Lahav, Galit, Stewart-Ornstein, Jacob
Published in bioRxiv (21.05.2019)
Published in bioRxiv (21.05.2019)
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Paper
SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data
Lee, Lindsay, Yu, Hongyu, Bojing Blair Jia, Jussila, Adam, Zhu, Chenxu, Chen, Jiawen, Xie, Liangqi, Hafner, Antonina, Strambio-De-Castillia, Caterina, Boettiger, Alistair, Ren, Bing, Li, Yun, Hu, Ming
Published in bioRxiv (19.12.2022)
Published in bioRxiv (19.12.2022)
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Paper