AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence
Feldgarden, Michael, Brover, Vyacheslav, Gonzalez-Escalona, Narjol, Frye, Jonathan G., Haendiges, Julie, Haft, Daniel H., Hoffmann, Maria, Pettengill, James B., Prasad, Arjun B., Tillman, Glenn E., Tyson, Gregory H., Klimke, William
Published in Scientific reports (16.06.2021)
Published in Scientific reports (16.06.2021)
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Journal Article
Genetic diversity and virulence profiles of Listeria monocytogenes recovered from bulk tank milk, milk filters, and milking equipment from dairies in the United States (2002 to 2014)
Kim, Seon Woo, Haendiges, Julie, Keller, Eric N, Myers, Robert, Kim, Alexander, Lombard, Jason E, Karns, Jeffrey S, Van Kessel, Jo Ann S, Haley, Bradd J
Published in PloS one (09.05.2018)
Published in PloS one (09.05.2018)
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Journal Article
Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chain
Haendiges, Julie, Davidson, Gordon R, Pettengill, James B, Reed, Elizabeth, Ramachandran, Padmini, Blessington, Tyann, Miller, Jesse D, Anderson, Nathan, Myoda, Sam, Brown, Eric W, Zheng, Jie, Tikekar, Rohan, Hoffmann, Maria
Published in PloS one (04.11.2021)
Published in PloS one (04.11.2021)
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Journal Article
Changes in the genomes and methylomes of three Salmonella enterica serovars after long-term storage in ground black pepper
Davies, Cary P, Jurkiw, Thomas, Haendiges, Julie, Reed, Elizabeth, Anderson, Nathan, Grasso-Kelley, Elizabeth, Hoffmann, Maria, Zheng, Jie
Published in Frontiers in microbiology (09.09.2022)
Published in Frontiers in microbiology (09.09.2022)
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Journal Article
A Nonautochthonous U.S. Strain of Vibrio parahaemolyticus Isolated from Chesapeake Bay Oysters Caused the Outbreak in Maryland in 2010
Haendiges, Julie, Jones, Jessica, Myers, Robert A, Mitchell, Clifford S, Butler, Erin, Toro, Magaly, Gonzalez-Escalona, Narjol
Published in Applied and environmental microbiology (01.06.2016)
Published in Applied and environmental microbiology (01.06.2016)
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Journal Article
Pandemic Vibrio parahaemolyticus, Maryland, USA, 2012
Haendiges, Julie, Rock, Marvin, Myers, Robert A, Brown, Eric W, Evans, Peter, Gonzalez-Escalona, Narjol
Published in Emerging infectious diseases (01.04.2014)
Published in Emerging infectious diseases (01.04.2014)
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Journal Article
Virulence and resistance genes profiles and clonal relationships of non-typhoidal food-borne Salmonella strains isolated in Tunisia by whole genome sequencing
Ben Hassena, Amal, Haendiges, Julie, Zormati, Sonia, Guermazi, Sonda, Gdoura, Radhouane, Gonzalez-Escalona, Narjol, Siala, Mariam
Published in International journal of food microbiology (16.01.2021)
Published in International journal of food microbiology (16.01.2021)
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Journal Article
Genomic Variation and Evolution of Vibrio parahaemolyticus ST36 over the Course of a Transcontinental Epidemic Expansion
Martinez-Urtaza, Jaime, van Aerle, Ronny, Abanto, Michel, Haendiges, Julie, Myers, Robert A, Trinanes, Joaquin, Baker-Austin, Craig, Gonzalez-Escalona, Narjol
Published in mBio (14.11.2017)
Published in mBio (14.11.2017)
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Journal Article
Tracing Origins of the Salmonella Bareilly Strain Causing a Food-borne Outbreak in the United States
Hoffmann, Maria, Luo, Yan, Monday, Steven R., Gonzalez-Escalona, Narjol, Ottesen, Andrea R., Muruvanda, Tim, Wang, Charles, Kastanis, George, Keys, Christine, Janies, Daniel, Senturk, Izzet F., Catalyurek, Umit V., Wang, Hua, Hammack, Thomas S., Wolfgang, William J., Schoonmaker-Bopp, Dianna, Chu, Alvina, Myers, Robert, Haendiges, Julie, Evans, Peter S., Meng, Jianghong, Strain, Errol A., Allard, Marc W., Brown, Eric W.
Published in The Journal of infectious diseases (15.02.2016)
Published in The Journal of infectious diseases (15.02.2016)
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Journal Article
Closed Genome Sequences of Salmonella enterica Serovar Javiana Isolates from Various Sources
Jurkiw, Thomas, Haendiges, Julie, Luo, Yan, Bell, Rebecca, Hoffmann, Maria, Zheng, Jie
Published in Microbiology resource announcements (21.07.2022)
Published in Microbiology resource announcements (21.07.2022)
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Journal Article
Whole-Genome Analysis of Halomonas sp. Soap Lake #7 Reveals It Possesses Putative Mrp Antiporter Operon Groups 1 and 2
Mormile, Melanie R, Edwards, Tiffany, Frank, Ron, Geurin, Zachery, Haendiges, Julie, Hoffmann, Maria, Miller, Jesse
Published in Genome biology and evolution (01.06.2019)
Published in Genome biology and evolution (01.06.2019)
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Journal Article
Sequence Type 631 Vibrio parahaemolyticus, an Emerging Foodborne Pathogen in North America
Xu, Feng, Gonzalez-Escalona, Narjol, Haendiges, Julie, Myers, Robert A, Ferguson, Jana, Stiles, Tracy, Hickey, Eric, Moore, Michael, Hickey, John Michael, Schillaci, Christopher, Mank, Laurn, DeRosia-Banick, Kristin, Matluk, Nicholas, Robbins, Amy, Sebra, Robert P, Cooper, Vaughn S, Jones, Stephen H, Whistler, Cheryl A
Published in Journal of clinical microbiology (01.02.2017)
Published in Journal of clinical microbiology (01.02.2017)
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Journal Article
Salmonella enterica serovar Kentucky recovered from human clinical cases in Maryland, USA (2011–2015)
Haley, Bradd J., Kim, Seon Woo, Haendiges, Julie, Keller, Eric, Torpey, David, Kim, Alexander, Crocker, Kia, Myers, Robert A., Van Kessel, Jo Ann S.
Published in Zoonoses and public health (01.06.2019)
Published in Zoonoses and public health (01.06.2019)
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Journal Article
Characterization of Vibrio parahaemolyticus clinical strains from Maryland (2012-2013) and comparisons to a locally and globally diverse V. parahaemolyticus strains by whole-genome sequence analysis
Haendiges, Julie, Timme, Ruth, Allard, Marc W, Myers, Robert A, Brown, Eric W, Gonzalez-Escalona, Narjol
Published in Frontiers in microbiology (19.02.2015)
Published in Frontiers in microbiology (19.02.2015)
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Journal Article
Complete Genome Sequences of Four Salmonella enterica subsp. enterica Serovar Senftenberg and Montevideo Isolates Associated with a 2016 Multistate Outbreak in the United States
Haendiges, Julie, Blessington, Tyann, Zheng, Jie, Davidson, Gordon, Miller, Jesse D, Hoffmann, Maria
Published in Genome announcements (Washington, DC) (28.06.2018)
Published in Genome announcements (Washington, DC) (28.06.2018)
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Journal Article
Complete Genome Sequences of Four Salmonella enterica Strains Associated with Pistachios Assembled Using a Combination of Short- and Long-Read Sequencing
Haendiges, Julie, Gonzalez-Escalona, Narjol, Miller, Jesse D., Hoffmann, Maria
Published in Microbiology resource announcements (19.09.2019)
Published in Microbiology resource announcements (19.09.2019)
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Journal Article