Phenotype, function, and differentiation potential of human monocyte subsets
Boyette, Lisa B, Macedo, Camila, Hadi, Kevin, Elinoff, Beth D, Walters, John T, Ramaswami, Bala, Chalasani, Geetha, Taboas, Juan M, Lakkis, Fadi G, Metes, Diana M
Published in PloS one (26.04.2017)
Published in PloS one (26.04.2017)
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Somatic whole genome dynamics of precancer in Barrett's esophagus reveals features associated with disease progression
Paulson, Thomas G, Galipeau, Patricia C, Oman, Kenji M, Sanchez, Carissa A, Kuhner, Mary K, Smith, Lucian P, Hadi, Kevin, Shah, Minita, Arora, Kanika, Shelton, Jennifer, Johnson, Molly, Corvelo, Andre, Maley, Carlo C, Yao, Xiaotong, Sanghvi, Rashesh, Venturini, Elisa, Emde, Anne-Katrin, Hubert, Benjamin, Imielinski, Marcin, Robine, Nicolas, Reid, Brian J, Li, Xiaohong
Published in Nature communications (28.04.2022)
Published in Nature communications (28.04.2022)
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Enhancing Myeloid Cancer Genomic Profiling through Comprehensive Whole Genome Sequencing Using the Isabl Gxt Heme Analytical Platform
Deshpande, Aditya S, Levine, Max F., Hadi, Kevin, Gundem, Gunes, Patel, Minal, Skrzypczak, Stan, Kung, Andrew L., Medina-Martínez, Juan S, Papaemmanuil, Elli
Published in Blood (02.11.2023)
Published in Blood (02.11.2023)
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Whole-genome Analysis Elucidates Complex Genomic Events in GLI1 -rearranged Enteric Tumor
Mendelson, Nicole L, Al Assaad, Majd, Hadi, Kevin, Manohar, Jyothi, Sigouros, Michael, Sboner, Andrea, Medina-Martínez, Juan S, Elemento, Olivier, Jessurun, José, Mosquera, Juan Miguel
Published in The American journal of surgical pathology (01.10.2023)
Published in The American journal of surgical pathology (01.10.2023)
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Most large structural variants in cancer genomes can be detected without long reads
Choo, Zi-Ning, Behr, Julie M, Deshpande, Aditya, Hadi, Kevin, Yao, Xiaotong, Tian, Huasong, Takai, Kaori, Zakusilo, George, Rosiene, Joel, Da Cruz Paula, Arnaud, Weigelt, Britta, Setton, Jeremy, Riaz, Nadeem, Powell, Simon N, Busam, Klaus, Shoushtari, Alexander N, Ariyan, Charlotte, Reis-Filho, Jorge, de Lange, Titia, Imieliński, Marcin
Published in Nature genetics (01.12.2023)
Published in Nature genetics (01.12.2023)
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Abstract P2-06-04: Pathognomonic long molecule footprints of backup repair pathways in homologous recombination deficient cancers
Setton, Jeremy, Hadi, Kevin, Tian, Huasong, Paula, Arnaud Da Cruz, Rosiene, Joel, Choo, Zi-Ning, Behr, Julie, Yao, Xiaotong, Elemento, Olivier, Weigelt, Britta, Riaz, Nadeem, Reis-Filho, Jorge S, Imielinski, Marcin, Powell, Simon N
Published in Cancer research (Chicago, Ill.) (15.02.2022)
Published in Cancer research (Chicago, Ill.) (15.02.2022)
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Long-molecule scars of backup DNA repair in BRCA1- and BRCA2-deficient cancers
Setton, Jeremy, Hadi, Kevin, Choo, Zi-Ning, Kuchin, Katherine S., Tian, Huasong, Da Cruz Paula, Arnaud, Rosiene, Joel, Selenica, Pier, Behr, Julie, Yao, Xiaotong, Deshpande, Aditya, Sigouros, Michael, Manohar, Jyothi, Nauseef, Jones T., Mosquera, Juan-Miguel, Elemento, Olivier, Weigelt, Britta, Riaz, Nadeem, Reis-Filho, Jorge S., Powell, Simon N., Imieliński, Marcin
Published in Nature (London) (07.09.2023)
Published in Nature (London) (07.09.2023)
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Human immunodeficiency virus type 1 Vpr polymorphisms associated with progressor and nonprogressor individuals alter Vpr-associated functions
Hadi, Kevin, Walker, Leah A, Guha, Debjani, Murali, Ramachandran, Watkins, Simon C, Tarwater, Patrick, Srinivasan, Alagarsamy, Ayyavoo, Velpandi
Published in Journal of general virology (01.03.2014)
Published in Journal of general virology (01.03.2014)
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Abstract 2149: A whole genome sequencing classifier of homologous recombination deficiency
Hadi, Kevin, Gundem, Gunes, Levine, Max F., Deshpande, Aditya, Patel, Minal, Skzrypczak, Stan, Assaad, Majd Al, Mosquera, Juan Miguel, Elemento, Olivier, Kung, Andrew L., Medina-Martínez, Juan S., Papaemmanuil, Elli
Published in Cancer research (Chicago, Ill.) (04.04.2023)
Published in Cancer research (Chicago, Ill.) (04.04.2023)
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Impact of Induction Therapy on Circulating T Follicular Helper Cells and Subsequent Donor-Specific Antibody Formation After Kidney Transplant
Macedo, Camila, Hadi, Kevin, Walters, John, Elinoff, Beth, Marrari, Marilyn, Zeevi, Adriana, Ramaswami, Bala, Chalasani, Geetha, Landsittel, Douglas, Shields, Adele, Alloway, Rita, Lakkis, Fadi G., Woodle, E. Steve, Metes, Diana
Published in Kidney international reports (01.03.2019)
Published in Kidney international reports (01.03.2019)
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Abstract 6196: Fanconi anemia pathway deficiency drives copy number variation in squamous cell carcinoma
Webster, Andrew L., Sanders, Mathijs A., Patel, Krupa, Dietrich, Ralf, Noonan, Raymond J., Lach, Francis P., White, Ryan R., Goldfarb, Audrey M., Hadi, Kevin, Edwards, Matthew M., Donovan, Frank X., Jung, Moonjung, Sridhar, Sunandini, Fedrigo, Olivier, Tian, Huasong, Rosiene, Joel, Heineman, Thomas, Kennedy, Jennifer, Bean, Lorenzo, Rosti, Rasim O., Tryon, Rebecca, Gonzalez, Ashlyn-Maree, Rosenberg, Allana, Luo, Ji-Dung, Carrol, Thomas, Velleuer, Eunike, Rastatter, Jeff C., Wells, Susanne I., Surrallés, Jordi, Bagby, Grover, MacMillan, Margaret L., Wagner, John E., Cancio, Maria, Boulad, Farid, Scognamiglio, Theresa, Vaughan, Roger, Koren, Amnon, Imielinski, Marcin, Chandrasekharappa, Settara, Auerbach, Arleen D., Singh, Bhuvanesh, Kutler, David, Campbell, Peter J., Smogorzewska, Agata
Published in Cancer research (Chicago, Ill.) (15.06.2022)
Published in Cancer research (Chicago, Ill.) (15.06.2022)
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Loose ends in cancer genome structure
Behr, Julie M, Yao, Xiaotong, Hadi, Kevin, Tian, Huasong, Deshpande, Aditya, Rosiene, Joel, De Lange, Titia, Imielinski, Marcin
Published in bioRxiv (27.05.2021)
Published in bioRxiv (27.05.2021)
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Fanconi Anemia Pathway Deficiency Drives Copy Number Variation in Squamous Cell Carcinomas
Webster, Andrew Lh, Sanders, Mathijs A, Patel, Krupa, Dietrich, Ralf, Noonan, Raymond J, Lach, Francis P, White, Ryan R, Goldfarb, Audrey, Hadi, Kevin, Edwards, Matthew M, Donovan, Frank X, Jung, Moonjung, Sunandini Sridhar, Fedrigo, Olivier, Tian, Huasong, Rosiene, Joel, Heineman, Thomas, Kennedy, Jennifer A, Bean, Lorenzo, Rosti, Ozgur, Tryon, Rebecca, Gonzalez, Ashlyn-Maree, Rosenberg, Allana, Ji-Dung Luo, Carrol, Thomas, Velleuer, Eunike, Rastatter, Jeff C, Wells, Susanne I, Surralles, Jordi, Bagby, Grover, Macmillan, Margaret L, Wagner, John E, Cancio, Maria, Boulad, Farid, Scognamiglio, Theresa, Vaughan, Roger, Koren, Amnon, Imielinski, Marcin, Chandrasekharappa, Settara, Auerbach, Arleen D, Singh, Bhuvanesh, Kutler, David I, Campbell, Peter J, Smogorzewska, Agata
Published in bioRxiv (16.08.2021)
Published in bioRxiv (16.08.2021)
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Novel patterns of complex structural variation revealed across thousands of cancer genome graphs
Hadi, Kevin, Yao, Xiaotong, Behr, Julie M, Deshpande, Aditya, Xanthopoulakis, Charalampos, Rosiene, Joel, Madison Darmofal, Tian, Huasong, Derose, Joseph, Mortensen, Rick, Adney, Emily M, Gajic, Zoran, Eng, Kenneth, Wala, Jeremiah Anthony, Wrzeszczyński, Kazimierz O, Arora, Kanika, Shah, Minita, Emde, Anne-Katrin, Felice, Vanessa, Frank, Mayu O, Darnell, Robert, Ghandi, Mahmoud, Huang, Franklin, Maciejowski, John, De Lange, Titia, Setton, Jeremy, Riaz, Nadeem, Reis-Filho, Jorge S, Powell, Simon, Knowles, David, Reznik, Ed, Mishra, Bhubaneswar, Beroukhim, Rameen, Zody, Michael C, Robine, Nicolas, Oman, Kenji, Sanchez, Carissa A, Kuhner, Mary K, Smith, Lucian P, Galipeau, Patricia C, Paulson, Thomas G, Reid, Brian J, Li, Xiaohong, Wilkes, David, Sboner, Andrea, Juan Miguel Mosquera, Elemento, Olivier, Imielinski, Marcin
Published in bioRxiv (12.11.2019)
Published in bioRxiv (12.11.2019)
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