Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin
Bokulich, Nicholas A, Kaehler, Benjamin D, Rideout, Jai Ram, Dillon, Matthew, Bolyen, Evan, Knight, Rob, Huttley, Gavin A, Gregory Caporaso, J
Published in Microbiome (17.05.2018)
Published in Microbiome (17.05.2018)
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Journal Article
Species abundance information improves sequence taxonomy classification accuracy
Kaehler, Benjamin D, Bokulich, Nicholas A, McDonald, Daniel, Knight, Rob, Caporaso, J Gregory, Huttley, Gavin A
Published in Nature communications (11.10.2019)
Published in Nature communications (11.10.2019)
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Journal Article
Histone H2A.Z inheritance during the cell cycle and its impact on promoter organization and dynamics
Nekrasov, Maxim, Amrichova, Jana, Parker, Brian J, Soboleva, Tatiana A, Jack, Cameron, Williams, Rohan, Huttley, Gavin A, Tremethick, David J
Published in Nature structural & molecular biology (01.11.2012)
Published in Nature structural & molecular biology (01.11.2012)
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Loss of ACTN3 gene function alters mouse muscle metabolism and shows evidence of positive selection in humans
Hook, Jeff W, Seto, Jane T, Gunning, Peter W, MacArthur, Daniel G, Quinlan, Kate G, Huttley, Gavin A, Lemckert, Frances A, Hardeman, Edna C, Edwards, Michael R, Berman, Yemima, Easteal, Simon, Kee, Anthony J, North, Kathryn N, Yang, Nan, Raftery, Joanna M
Published in Nature genetics (01.10.2007)
Published in Nature genetics (01.10.2007)
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Infection with a Virulent Strain of Wolbachia Disrupts Genome Wide-Patterns of Cytosine Methylation in the Mosquito Aedes aegypti
Ye, Yixin H, Woolfit, Megan, Huttley, Gavin A, Rancès, Edwige, Caragata, Eric P, Popovici, Jean, O'Neill, Scott L, McGraw, Elizabeth A
Published in PloS one (19.06.2013)
Published in PloS one (19.06.2013)
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Journal Article
Did aculeate silk evolve as an antifouling material?
Sutherland, Tara D, Sriskantha, Alagacone, Rapson, Trevor D, Kaehler, Benjamin D, Huttley, Gavin A
Published in PloS one (21.09.2018)
Published in PloS one (21.09.2018)
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The embedding problem for markov models of nucleotide substitution
Verbyla, Klara L, Yap, Von Bing, Pahwa, Anuj, Shao, Yunli, Huttley, Gavin A
Published in PloS one (30.07.2013)
Published in PloS one (30.07.2013)
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Transcriptome sequencing of two phenotypic mosaic Eucalyptus trees reveals large scale transcriptome re-modelling
Padovan, Amanda, Patel, Hardip R, Chuah, Aaron, Huttley, Gavin A, Krause, Sandra T, Degenhardt, Jörg, Foley, William J, Külheim, Carsten
Published in PloS one (15.05.2015)
Published in PloS one (15.05.2015)
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Rates of Genome Evolution and Branching Order from Whole Genome Analysis
Huttley, Gavin A., Wakefield, Matthew J., Easteal, Simon
Published in Molecular biology and evolution (01.08.2007)
Published in Molecular biology and evolution (01.08.2007)
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Statistical Methods for Identifying Sequence Motifs Affecting Point Mutations
Zhu, Yicheng, Neeman, Teresa, Yap, Von Bing, Huttley, Gavin A
Published in Genetics (Austin) (01.02.2017)
Published in Genetics (Austin) (01.02.2017)
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Mitochondrial DNA Sequences in Ancient Australians: Implications for Modern Human Origins
Adcock, Gregory J., Dennis, Elizabeth S., Easteal, Simon, Huttley, Gavin A., Jermiin, Lars S., Peacock, W. James, Thorne, Alan
Published in Proceedings of the National Academy of Sciences - PNAS (16.01.2001)
Published in Proceedings of the National Academy of Sciences - PNAS (16.01.2001)
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Whole exome sequencing of extreme morbid obesity patients: translational implications for obesity and related disorders
Paz-Filho, Gilberto, Boguszewski, Margaret C S, Mastronardi, Claudio A, Patel, Hardip R, Johar, Angad S, Chuah, Aaron, Huttley, Gavin A, Boguszewski, Cesar L, Wong, Ma-Li, Arcos-Burgos, Mauricio, Licinio, Julio
Published in Genes (25.08.2014)
Published in Genes (25.08.2014)
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QIIME allows analysis of high-throughput community sequencing data
Knight, Rob, Caporaso, J Gregory, Kuczynski, Justin, Stombaugh, Jesse, Bittinger, Kyle, Bushman, Frederic D, Costello, Elizabeth K, Fierer, Noah, Peña, Antonio Gonzalez, Goodrich, Julia K, Gordon, Jeffrey I, Huttley, Gavin A, Kelley, Scott T, Knights, Dan, Koenig, Jeremy E, Ley, Ruth E, Lozupone, Catherine A, McDonald, Daniel, Muegge, Brian D, Pirrung, Meg, Reeder, Jens, Sevinsky, Joel R, Turnbaugh, Peter J, Walters, William A, Widmann, Jeremy, Yatsunenko, Tanya, Zaneveld, Jesse
Published in Nature methods (01.05.2010)
Published in Nature methods (01.05.2010)
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Detecting coevolution without phylogenetic trees? Tree-ignorant metrics of coevolution perform as well as tree-aware metrics
Caporaso, J Gregory, Smit, Sandra, Easton, Brett C, Hunter, Lawrence, Huttley, Gavin A, Knight, Rob
Published in BMC evolutionary biology (03.12.2008)
Published in BMC evolutionary biology (03.12.2008)
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Journal Article
Pathological rate matrices: from primates to pathogens
Schranz, Harold W, Yap, Von Bing, Easteal, Simon, Knight, Rob, Huttley, Gavin A
Published in BMC bioinformatics (19.12.2008)
Published in BMC bioinformatics (19.12.2008)
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