GUIdock: Using Docker Containers with a Common Graphics User Interface to Address the Reproducibility of Research
Hung, Ling-Hong, Kristiyanto, Daniel, Lee, Sung Bong, Yeung, Ka Yee
Published in PloS one (05.04.2016)
Published in PloS one (05.04.2016)
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Journal Article
A graphical, interactive and GPU-enabled workflow to process long-read sequencing data
Reddy, Shishir, Hung, Ling-Hong, Sala-Torra, Olga, Radich, Jerald P, Yeung, Cecilia CS, Yeung, Ka Yee
Published in BMC genomics (23.08.2021)
Published in BMC genomics (23.08.2021)
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Journal Article
Cloud-enabled Biodepot workflow builder integrates image processing using Fiji with reproducible data analysis using Jupyter notebooks
Hung, Ling-Hong, Straw, Evan, Reddy, Shishir, Schmitz, Robert, Colburn, Zachary, Yeung, Ka Yee
Published in Scientific reports (02.09.2022)
Published in Scientific reports (02.09.2022)
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Journal Article
Reproducible Bioconductor workflows using browser-based interactive notebooks and containers
Almugbel, Reem, Hung, Ling-Hong, Hu, Jiaming, Almutairy, Abeer, Ortogero, Nicole, Tamta, Yashaswi, Yeung, Ka Yee
Published in Journal of the American Medical Informatics Association : JAMIA (01.01.2018)
Published in Journal of the American Medical Informatics Association : JAMIA (01.01.2018)
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Journal Article
Structure prediction of partial-length protein sequences
Laurenzi, Adrian, Hung, Ling-Hong, Samudrala, Ram
Published in International journal of molecular sciences (17.07.2013)
Published in International journal of molecular sciences (17.07.2013)
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Journal Article
fastBMA: scalable network inference and transitive reduction
Hung, Ling-Hong, Shi, Kaiyuan, Wu, Migao, Young, William Chad, Raftery, Adrian E., Yeung, Ka Yee
Published in Gigascience (01.10.2017)
Published in Gigascience (01.10.2017)
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Journal Article
PROTINFO: new algorithms for enhanced protein structure predictions
Hung, Ling-Hong, Ngan, Shing-Chung, Liu, Tianyun, Samudrala, Ram
Published in Nucleic acids research (01.07.2005)
Published in Nucleic acids research (01.07.2005)
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Journal Article
Data access for the 1,000 Plants (1KP) project
Matasci, Naim, Hung, Ling-Hong, Yan, Zhixiang, Carpenter, Eric J, Wickett, Norman J, Mirarab, Siavash, Nguyen, Nam, Warnow, Tandy, Ayyampalayam, Saravanaraj, Barker, Michael, Burleigh, J Gordon, Gitzendanner, Matthew A, Wafula, Eric, Der, Joshua P, dePamphilis, Claude W, Roure, Béatrice, Philippe, Hervé, Ruhfel, Brad R, Miles, Nicholas W, Graham, Sean W, Mathews, Sarah, Surek, Barbara, Melkonian, Michael, Soltis, Douglas E, Soltis, Pamela S, Rothfels, Carl, Pokorny, Lisa, Shaw, Jonathan A, DeGironimo, Lisa, Stevenson, Dennis W, Villarreal, Juan Carlos, Chen, Tao, Kutchan, Toni M, Rolf, Megan, Baucom, Regina S, Deyholos, Michael K, Samudrala, Ram, Tian, Zhijian, Wu, Xiaolei, Sun, Xiao, Zhang, Yong, Wang, Jun, Leebens-Mack, Jim, Wong, Gane Ka-Shu
Published in Gigascience (27.10.2014)
Published in Gigascience (27.10.2014)
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Journal Article
Container Profiler: Profiling resource utilization of containerized big data pipelines
Hoang, Varik, Hung, Ling-Hong, Perez, David, Deng, Huazeng, Schooley, Raymond, Arumilli, Niharika, Yeung, Ka Yee, Lloyd, Wes
Published in Gigascience (28.12.2022)
Published in Gigascience (28.12.2022)
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Journal Article