Temporally Distinct PD-L1 Expression by Tumor and Host Cells Contributes to Immune Escape
Noguchi, Takuro, Ward, Jeffrey P, Gubin, Matthew M, Arthur, Cora D, Lee, Sang Hun, Hundal, Jasreet, Selby, Mark J, Graziano, Robert F, Mardis, Elaine R, Korman, Alan J, Schreiber, Robert D
Published in Cancer immunology research (01.02.2017)
Published in Cancer immunology research (01.02.2017)
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The prognostic effects of somatic mutations in ER-positive breast cancer
Griffith, Obi L, Spies, Nicholas C, Anurag, Meenakshi, Griffith, Malachi, Luo, Jingqin, Tu, Dongsheng, Yeo, Belinda, Kunisaki, Jason, Miller, Christopher A, Krysiak, Kilannin, Hundal, Jasreet, Ainscough, Benjamin J, Skidmore, Zachary L, Campbell, Katie, Kumar, Runjun, Fronick, Catrina, Cook, Lisa, Snider, Jacqueline E, Davies, Sherri, Kavuri, Shyam M, Chang, Eric C, Magrini, Vincent, Larson, David E, Fulton, Robert S, Liu, Shuzhen, Leung, Samuel, Voduc, David, Bose, Ron, Dowsett, Mitch, Wilson, Richard K, Nielsen, Torsten O, Mardis, Elaine R, Ellis, Matthew J
Published in Nature communications (04.09.2018)
Published in Nature communications (04.09.2018)
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pVACtools: A Computational Toolkit to Identify and Visualize Cancer Neoantigens
Hundal, Jasreet, Kiwala, Susanna, McMichael, Joshua, Miller, Christopher A, Xia, Huiming, Wollam, Alexander T, Liu, Connor J, Zhao, Sidi, Feng, Yang-Yang, Graubert, Aaron P, Wollam, Amber Z, Neichin, Jonas, Neveau, Megan, Walker, Jason, Gillanders, William E, Mardis, Elaine R, Griffith, Obi L, Griffith, Malachi
Published in Cancer immunology research (01.03.2020)
Published in Cancer immunology research (01.03.2020)
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Accounting for proximal variants improves neoantigen prediction
Hundal, Jasreet, Kiwala, Susanna, Feng, Yang-Yang, Liu, Connor J, Govindan, Ramaswamy, Chapman, William C, Uppaluri, Ravindra, Swamidass, S Joshua, Griffith, Obi L, Mardis, Elaine R, Griffith, Malachi
Published in Nature genetics (01.01.2019)
Published in Nature genetics (01.01.2019)
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Genomic impact of transient low-dose decitabine treatment on primary AML cells
Klco, Jeffery M., Spencer, David H., Lamprecht, Tamara L., Sarkaria, Shawn M., Wylie, Todd, Magrini, Vincent, Hundal, Jasreet, Walker, Jason, Varghese, Nobish, Erdmann-Gilmore, Petra, Lichti, Cheryl F., Meyer, Matthew R., Townsend, R. Reid, Wilson, Richard K., Mardis, Elaine R., Ley, Timothy J.
Published in Blood (28.02.2013)
Published in Blood (28.02.2013)
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Author Correction: The prognostic effects of somatic mutations in ER-positive breast cancer
Griffith, Obi L, Spies, Nicholas C, Anurag, Meenakshi, Griffith, Malachi, Luo, Jingqin, Tu, Dongsheng, Yeo, Belinda, Kunisaki, Jason, Miller, Christopher A, Krysiak, Kilannin, Hundal, Jasreet, Ainscough, Benjamin J, Skidmore, Zachary L, Campbell, Katie, Kumar, Runjun, Fronick, Catrina, Cook, Lisa, Snider, Jacqueline E, Davies, Sherri, Kavuri, Shyam M, Chang, Eric C, Magrini, Vincent, Larson, David E, Fulton, Robert S, Liu, Shuzhen, Leung, Samuel, Voduc, David, Bose, Ron, Dowsett, Mitch, Wilson, Richard K, Nielsen, Torsten O, Mardis, Elaine R, Ellis, Matthew J
Published in Nature communications (14.11.2018)
Published in Nature communications (14.11.2018)
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Truncating Prolactin Receptor Mutations Promote Tumor Growth in Murine Estrogen Receptor-Alpha Mammary Carcinomas
Griffith, Obi L., Chan, Szeman Ruby, Griffith, Malachi, Krysiak, Kilannin, Skidmore, Zachary L., Hundal, Jasreet, Allen, Julie A., Arthur, Cora D., Runci, Daniele, Bugatti, Mattia, Miceli, Alexander P., Schmidt, Heather, Trani, Lee, Kanchi, Krishna-Latha, Miller, Christopher A., Larson, David E., Fulton, Robert S., Vermi, William, Wilson, Richard K., Schreiber, Robert D., Mardis, Elaine R.
Published in Cell reports (Cambridge) (27.09.2016)
Published in Cell reports (Cambridge) (27.09.2016)
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A dendritic cell vaccine increases the breadth and diversity of melanoma neoantigen-specific T cells
Carreno, Beatriz M., Magrini, Vincent, Becker-Hapak, Michelle, Kaabinejadian, Saghar, Hundal, Jasreet, Petti, Allegra A., Ly, Amy, Lie, Wen-Rong, Hildebrand, William H., Mardis, Elaine R., Linette, Gerald P.
Published in Science (American Association for the Advancement of Science) (15.05.2015)
Published in Science (American Association for the Advancement of Science) (15.05.2015)
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Role of TP53 mutations in the origin and evolution of therapy-related acute myeloid leukaemia
Wong, Terrence N, Ramsingh, Giridharan, Young, Andrew L, Miller, Christopher A, Touma, Waseem, Welch, John S, Lamprecht, Tamara L, Shen, Dong, Hundal, Jasreet, Fulton, Robert S, Heath, Sharon, Baty, Jack D, Klco, Jeffery M, Ding, Li, Mardis, Elaine R, Westervelt, Peter, DiPersio, John F, Walter, Matthew J, Graubert, Timothy A, Ley, Timothy J, Druley, Todd, Link, Daniel C, Wilson, Richard K
Published in Nature (London) (26.02.2015)
Published in Nature (London) (26.02.2015)
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Checkpoint blockade cancer immunotherapy targets tumour-specific mutant antigens
Gubin, Matthew M, Zhang, Xiuli, Schuster, Heiko, Caron, Etienne, Ward, Jeffrey P, Noguchi, Takuro, Ivanova, Yulia, Hundal, Jasreet, Arthur, Cora D, Krebber, Willem-Jan, Mulder, Gwenn E, Toebes, Mireille, Vesely, Matthew D, Lam, Samuel S K, Korman, Alan J, Allison, James P, Freeman, Gordon J, Sharpe, Arlene H, Pearce, Erika L, Schumacher, Ton N, Aebersold, Ruedi, Rammensee, Hans-Georg, Melief, Cornelis J M, Mardis, Elaine R, Gillanders, William E, Artyomov, Maxim N, Schreiber, Robert D
Published in Nature (London) (27.11.2014)
Published in Nature (London) (27.11.2014)
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Cancer exome analysis reveals a T-cell-dependent mechanism of cancer immunoediting
MATSUSHITA, Hirokazu, VESELY, Matthew D, HUNDAL, Jasreet, WENDL, Michael C, DEMETER, Ryan, WYLIE, Todd, ALLISON, James P, SMYTH, Mark J, OLD, Lloyd J, MARDIS, Elaine R, SCHREIBER, Robert D, KOBOLDT, Daniel C, RICKERT, Charles G, UPPALURI, Ravindra, MAGRINI, Vincent J, ARTHUR, Cora D, MICHAEL WHITE, J, CHEN, Yee-Shiuan, SHEA, Lauren K
Published in Nature (London) (08.02.2012)
Published in Nature (London) (08.02.2012)
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Neoantigen-targeted CD8 + T cell responses with PD-1 blockade therapy
Puig-Saus, Cristina, Sennino, Barbara, Peng, Songming, Wang, Clifford L, Pan, Zheng, Yuen, Benjamin, Purandare, Bhamini, An, Duo, Quach, Boi B, Nguyen, Diana, Xia, Huiming, Jilani, Sameeha, Shao, Kevin, McHugh, Claire, Greer, John, Peabody, Phillip, Nayak, Saparya, Hoover, Jonathan, Said, Sara, Jacoby, Kyle, Dalmas, Olivier, Foy, Susan P, Conroy, Andrew, Yi, Michael C, Shieh, Christine, Lu, William, Heeringa, Katharine, Ma, Yan, Chizari, Shahab, Pilling, Melissa J, Ting, Marc, Tunuguntla, Ramya, Sandoval, Salemiz, Moot, Robert, Hunter, Theresa, Zhao, Sidi, Saco, Justin D, Perez-Garcilazo, Ivan, Medina, Egmidio, Vega-Crespo, Agustin, Baselga-Carretero, Ignacio, Abril-Rodriguez, Gabriel, Cherry, Grace, Wong, Deborah J, Hundal, Jasreet, Chmielowski, Bartosz, Speiser, Daniel E, Bethune, Michael T, Bao, Xiaoyan R, Gros, Alena, Griffith, Obi L, Griffith, Malachi, Heath, James R, Franzusoff, Alex, Mandl, Stefanie J, Ribas, Antoni
Published in Nature (London) (23.03.2023)
Published in Nature (London) (23.03.2023)
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Enforced differentiation of Dnmt3a-null bone marrow leads to failure with c-Kit mutations driving leukemic transformation
Celik, Hamza, Mallaney, Cates, Kothari, Alok, Ostrander, Elizabeth L., Eultgen, Elizabeth, Martens, Andrew, Miller, Christopher A., Hundal, Jasreet, Klco, Jeffery M., Challen, Grant A.
Published in Blood (22.01.2015)
Published in Blood (22.01.2015)
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Association Between Mutation Clearance After Induction Therapy and Outcomes in Acute Myeloid Leukemia
Klco, Jeffery M, Miller, Christopher A, Griffith, Malachi, Petti, Allegra, Spencer, David H, Ketkar-Kulkarni, Shamika, Wartman, Lukas D, Christopher, Matthew, Lamprecht, Tamara L, Helton, Nicole M, Duncavage, Eric J, Payton, Jacqueline E, Baty, Jack, Heath, Sharon E, Griffith, Obi L, Shen, Dong, Hundal, Jasreet, Chang, Gue Su, Fulton, Robert, O'Laughlin, Michelle, Fronick, Catrina, Magrini, Vincent, Demeter, Ryan T, Larson, David E, Kulkarni, Shashikant, Ozenberger, Bradley A, Welch, John S, Walter, Matthew J, Graubert, Timothy A, Westervelt, Peter, Radich, Jerald P, Link, Daniel C, Mardis, Elaine R, DiPersio, John F, Wilson, Richard K, Ley, Timothy J
Published in JAMA : the journal of the American Medical Association (25.08.2015)
Published in JAMA : the journal of the American Medical Association (25.08.2015)
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DNMT3A Mutations in Acute Myeloid Leukemia
Ley, Timothy J, Ding, Li, Walter, Matthew J, McLellan, Michael D, Lamprecht, Tamara, Larson, David E, Kandoth, Cyriac, Payton, Jacqueline E, Baty, Jack, Welch, John, Harris, Christopher C, Lichti, Cheryl F, Townsend, R. Reid, Fulton, Lucinda A, Fulton, Robert S, Dooling, David J, Koboldt, Daniel C, Schmidt, Heather, Zhang, Qunyuan, Osborne, John R, Lin, Ling, O'Laughlin, Michelle, McMichael, Joshua F, Delehaunty, Kim D, McGrath, Sean D, Magrini, Vincent J, Vickery, Tammi L, Hundal, Jasreet, Cook, Lisa L, Conyers, Joshua J, Swift, Gary W, Reed, Jerry P, Alldredge, Patricia A, Wylie, Todd, Walker, Jason, Kalicki, Joelle, Watson, Mark A, Heath, Sharon, Shannon, William D, Varghese, Nobish, Nagarajan, Rakesh, Westervelt, Peter, Tomasson, Michael H, Link, Daniel C, Graubert, Timothy A, DiPersio, John F, Mardis, Elaine R, Wilson, Richard K
Published in The New England journal of medicine (16.12.2010)
Published in The New England journal of medicine (16.12.2010)
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Immunological ignorance is an enabling feature of the oligo-clonal T cell response to melanoma neoantigens
Linette, Gerald P., Becker-Hapak, Michelle, Skidmore, Zachary L., Baroja, Miren Lorea, Xu, Chong, Hundal, Jasreet, Spencer, David H., Fu, Weixuan, Cummins, Casey, Robnett, Maya, Kaabinejadian, Saghar, Hildebrand, William H., Magrini, Vincent, Demeter, Ryan, Krupnick, Alexander S., Griffith, Obi L., Griffith, Malachi, Mardis, Elaine R., Carreno, Beatriz M.
Published in Proceedings of the National Academy of Sciences - PNAS (19.11.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (19.11.2019)
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Personalized DNA neoantigen vaccine in combination with plasmid IL-12 for the treatment of a patient with anaplastic astrocytoma
Johanns, Tanner Michael, Perales-Puchalt, Alfredo, Stupp, Roger, Berger, Mitchel, Gillanders, William E., Miller, Chris, Hundal, Jasreet, McLellan, Michael D., Goedegebuure, S. Peter, Rochestie, Sarah, Cooch, Neil, Peters, Joann, Dunn, Gavin P., Sardesai, Niranjan
Published in Journal of clinical oncology (20.05.2021)
Published in Journal of clinical oncology (20.05.2021)
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Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples
Barnell, Erica K, Ronning, Peter, Campbell, Katie M, Krysiak, Kilannin, Ainscough, Benjamin J, Sheta, Lana M, Pema, Shahil P, Schmidt, Alina D, Richters, Megan, Cotto, Kelsy C, Danos, Arpad M, Ramirez, Cody, Skidmore, Zachary L, Spies, Nicholas C, Hundal, Jasreet, Sediqzad, Malik S, Kunisaki, Jason, Gomez, Felicia, Trani, Lee, Matlock, Matthew, Wagner, Alex H, Swamidass, S Joshua, Griffith, Malachi, Griffith, Obi L
Published in Genetics in medicine (01.04.2019)
Published in Genetics in medicine (01.04.2019)
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U2AF1 mutations alter sequence specificity of pre-mRNA binding and splicing
Okeyo-Owuor, T, White, B S, Chatrikhi, R, Mohan, D R, Kim, S, Griffith, M, Ding, L, Ketkar-Kulkarni, S, Hundal, J, Laird, K M, Kielkopf, C L, Ley, T J, Walter, M J, Graubert, T A
Published in Leukemia (01.04.2015)
Published in Leukemia (01.04.2015)
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76. Automating immunogenomic tumor board decision-making for neoantigen cancer vaccine design
Yao, Jennie, Singhal, Kartik, Kiwala, Susanna, Goedegebuure, Peter, Miller, Christopher, Xia, Huiming, Hoang, My, Khanfar, Mariam, Cotto, Kelsy, Davies, Sherri, Du, Feiyu, Schmidt, Evelyn, Chang, Gue Su, Hundal, Jasreet, Ward, Jeffrey, Inabinett, William, Hoos, William, Gillanders, William, Griffith, Obi, Griffith, Malachi
Published in Cancer genetics (01.08.2024)
Published in Cancer genetics (01.08.2024)
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