Gaussian accelerated molecular dynamics (GaMD): principles and applications
Wang, Jinan, Arantes, Pablo R, Bhattarai, Apurba, Hsu, Rohaine V, Pawnikar, Shristi, Huang, Yu-Ming M, Palermo, Giulia, Miao, Yinglong
Published in Wiley interdisciplinary reviews. Computational molecular science (01.09.2021)
Published in Wiley interdisciplinary reviews. Computational molecular science (01.09.2021)
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Journal Article
Microbial anaerobic Fe(II) oxidation – Ecology, mechanisms and environmental implications
Bryce, Casey, Blackwell, Nia, Schmidt, Caroline, Otte, Julia, Huang, Yu‐Ming, Kleindienst, Sara, Tomaszewski, Elizabeth, Schad, Manuel, Warter, Viola, Peng, Chao, Byrne, James M., Kappler, Andreas
Published in Environmental microbiology (01.10.2018)
Published in Environmental microbiology (01.10.2018)
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Journal Article
Molecular dynamics study reveals key disruptors of MEIG1–PACRG interaction
Hasse, Timothy, Zhang, Zhibing, Huang, Yu‐ming M.
Published in Proteins, structure, function, and bioinformatics (01.04.2023)
Published in Proteins, structure, function, and bioinformatics (01.04.2023)
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Journal Article
Elucidating degradation mechanisms of florfenicol in soil by stable-isotope assisted nontarget screening
Qiu, Min, Hu, Ailun, Huang, Yu-ming M., Zhao, Yun, He, Yan, Xu, Jianming, Lu, Zhijiang
Published in Journal of hazardous materials (05.02.2021)
Published in Journal of hazardous materials (05.02.2021)
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Journal Article
Mechanistic insights into ligand dissociation from the SARS-CoV-2 spike glycoprotein
Hasse, Timothy, Mantei, Esra, Shahoei, Rezvan, Pawnikar, Shristi, Wang, Jinan, Miao, Yinglong, Huang, Yu-Ming M
Published in PLoS computational biology (01.03.2024)
Published in PLoS computational biology (01.03.2024)
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Journal Article
Brownian dynamic study of an enzyme metabolon in the TCA cycle: Substrate kinetics and channeling
Huang, Yu‐ming M., Huber, Gary A., Wang, Nuo, Minteer, Shelley D., McCammon, J. Andrew
Published in Protein science (01.02.2018)
Published in Protein science (01.02.2018)
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Journal Article
Ligand Binding Pathways and Conformational Transitions of the HIV Protease
Miao, Yinglong, Huang, Yu-ming M, Walker, Ross C, McCammon, J. Andrew, Chang, Chia-en A
Published in Biochemistry (Easton) (06.03.2018)
Published in Biochemistry (Easton) (06.03.2018)
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Journal Article
Enhanced Disrupting Effect of Benzophenone‑1 Chlorination Byproducts to the Androgen Receptor: Cell-Based Assays and Gaussian Accelerated Molecular Dynamics Simulations
Zhan, Tingjie, Cui, Shixuan, Liu, Xujun, Zhang, Chunlong, Huang, Yu-ming M, Zhuang, Shulin
Published in Chemical research in toxicology (19.04.2021)
Published in Chemical research in toxicology (19.04.2021)
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Journal Article
Sarcopenia and Systemic Inflammation Synergistically Impact Survival in Oral Cavity Cancer
Lee, Jie, Liu, Shih-Hua, Dai, Kun-Yao, Huang, Yu-Ming, Li, Chi-Jung, Chen, John Chun-Hao, Leu, Yi-Shing, Liu, Chung-Ji, Chen, Yu-Jen
Published in The Laryngoscope (01.05.2021)
Published in The Laryngoscope (01.05.2021)
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Journal Article
Upregulation of long noncoding RNA XIST is associated with poor prognosis in human cancers
Liu, Ji‐Long, Zhang, Wen‐Qian, Zhao, Miao, Huang, Ming‐Yu
Published in Journal of cellular physiology (01.05.2019)
Published in Journal of cellular physiology (01.05.2019)
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Journal Article
Micro-LED as a Promising Candidate for High-Speed Visible Light Communication
James Singh, Konthoujam, Huang, Yu-Ming, Ahmed, Tanveer, Liu, An-Chen, Huang Chen, Sung-Wen, Liou, Fang-Jyun, Wu, Tingzhu, Lin, Chien-Chung, Chow, Chi-Wai, Lin, Gong-Ru, Kuo, Hao-Chung
Published in Applied sciences (01.10.2020)
Published in Applied sciences (01.10.2020)
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Journal Article
Molecular dynamic study of MlaC protein in Gram‐negative bacteria: conformational flexibility, solvent effect and protein‐phospholipid binding
Huang, Yu‐ming M., Miao, Yinglong, Munguia, Jason, Lin, Leo, Nizet, Victor, McCammon, J. Andrew
Published in Protein science (01.08.2016)
Published in Protein science (01.08.2016)
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Journal Article
Endosidin2 targets conserved exocyst complex subunit EXO70 to inhibit exocytosis
Zhang, Chunhua, Brown, Michelle Q., van de Ven, Wilhelmina, Zhang, Zhi-Min, Wu, Bin, Young, Michael C., Synek, Lukáš, Borchardt, Dan, Harrison, Reed, Pan, Songqin, Luo, Nan, Huang, Yu-ming M., Ghang, Yoo-Jin, Ung, Nolan, Li, Ruixi, Isley, Jonathan, Morikis, Dimitrios, Song, Jikui, Guo, Wei, Hooley, Richard J., Chang, Chia-en A., Yang, Zhenbiao, Zarsky, Viktor, Muday, Gloria K., Hicks, Glenn R., Raikhel, Natasha V.
Published in Proceedings of the National Academy of Sciences - PNAS (05.01.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (05.01.2016)
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Journal Article
Hepatic SEL1L-HRD1 ER-associated degradation regulates systemic iron homeostasis via ceruloplasmin
Thepsuwan, Pattaraporn, Bhattacharya, Asmita, Song, Zhenfeng, Hippleheuser, Stephen, Feng, Shaobin, Wei, Xiaoqiong, Das, Nupur K, Sierra, Mariana, Wei, Juncheng, Fang, Deyu, Huang, Yu-Ming M, Zhang, Kezhong, Shah, Yatrik M, Sun, Shengyi
Published in Proceedings of the National Academy of Sciences - PNAS (10.01.2023)
Published in Proceedings of the National Academy of Sciences - PNAS (10.01.2023)
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Journal Article
Spectrum of chronic kidney disease in China: A national study based on hospitalized patients from 2010 to 2015
Huang, Yu‐Ming, Xu, Damin, Long, Jianyan, Shi, Ying, Zhang, Luxia, Wang, Haibo, Levin, Adeera, Zhao, Ming‐Hui
Published in Nephrology (Carlton, Vic.) (01.07.2019)
Published in Nephrology (Carlton, Vic.) (01.07.2019)
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Journal Article
TrkB activation by 7, 8‐dihydroxyflavone increases synapse AMPA subunits and ameliorates spatial memory deficits in a mouse model of Alzheimer's disease
Gao, Lei, Tian, Mi, Zhao, Hong‐Yun, Xu, Qian‐Qian, Huang, Yu‐Ming, Si, Qun‐Cao, Tian, Qing, Wu, Qing‐Ming, Hu, Xia‐Min, Sun, Li‐Bo, McClintock, Shawn M., Zeng, Yan
Published in Journal of neurochemistry (01.02.2016)
Published in Journal of neurochemistry (01.02.2016)
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