ClustScan: an integrated program package for the semi-automatic annotation of modular biosynthetic gene clusters and in silico prediction of novel chemical structures
Starcevic, Antonio, Zucko, Jurica, Simunkovic, Jurica, Long, Paul F, Cullum, John, Hranueli, Daslav
Published in Nucleic acids research (01.12.2008)
Published in Nucleic acids research (01.12.2008)
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Journal Article
Proteomics Links the Redox State to Calcium Signaling During Bleaching of the Scleractinian Coral Acropora microphthalma on Exposure to High Solar Irradiance and Thermal Stress[S]
Weston, Andrew J., Dunlap, Walter C., Beltran, Victor H., Starcevic, Antonio, Hranueli, Daslav, Ward, Malcolm, Long, Paul F.
Published in Molecular & cellular proteomics (01.03.2015)
Published in Molecular & cellular proteomics (01.03.2015)
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Journal Article
Gene duplications are extensive and contribute significantly to the toxic proteome of nematocysts isolated from Acropora digitifera (Cnidaria: Anthozoa: Scleractinia)
Gacesa, Ranko, Chung, Ray, Dunn, Simon R, Weston, Andrew J, Jaimes-Becerra, Adrian, Marques, Antonio C, Morandini, André C, Hranueli, Daslav, Starcevic, Antonio, Ward, Malcolm, Long, Paul F
Published in BMC genomics (13.10.2015)
Published in BMC genomics (13.10.2015)
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Journal Article
Predicting substrate specificity of adenylation domains of nonribosomal peptide synthetases and other protein properties by latent semantic indexing
Baranašić, Damir, Zucko, Jurica, Diminic, Janko, Gacesa, Ranko, Long, Paul F, Cullum, John, Hranueli, Daslav, Starcevic, Antonio
Published in Journal of industrial microbiology & biotechnology (01.02.2014)
Published in Journal of industrial microbiology & biotechnology (01.02.2014)
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Journal Article
Enzymes of the Shikimic Acid Pathway Encoded in the Genome of a Basal Metazoan, Nematostella vectensis, Have Microbial Origins
Starcevic, Antonio, Akthar, Shamima, Dunlap, Walter C., Shick, J. Malcolm, Hranueli, Daslav, Cullum, John, Long, Paul F.
Published in Proceedings of the National Academy of Sciences - PNAS (19.02.2008)
Published in Proceedings of the National Academy of Sciences - PNAS (19.02.2008)
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Journal Article
Oxytetracycline hyper-production through targeted genome reduction of Streptomyces rimosus
Pšeničnik, Alen, Slemc, Lucija, Avbelj, Martina, Tome, Miha, Šala, Martin, Herron, Paul, Shmatkov, Maksym, Petek, Marko, Baebler, Špela, Mrak, Peter, Hranueli, Daslav, Starčević, Antonio, Hunter, Iain S, Petković, Hrvoje
Published in mSystems (16.05.2024)
Published in mSystems (16.05.2024)
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Journal Article
KEGG orthology-based annotation of the predicted proteome of Acropora digitifera: ZoophyteBase - an open access and searchable database of a coral genome
Dunlap, Walter C, Starcevic, Antonio, Baranasic, Damir, Diminic, Janko, Zucko, Jurica, Gacesa, Ranko, van Oppen, Madeleine Jh, Hranueli, Daslav, Cullum, John, Long, Paul F
Published in BMC genomics (26.07.2013)
Published in BMC genomics (26.07.2013)
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Journal Article
Bioprospecting for Genes Encoding Hydrocarbon-Degrading Enzymes from Metagenomic Samples Isolated from Northern Adriatic Sea Sediments
Gacesa, Ranko, Baranasic, Damir, Starcevic, Antonio, Diminic, Janko, Korlević, Marino, Najdek, Mirjana, Blažina, Maria, Oršolić, Davor, Kolesarić, Domagoj, Long, Paul F, Cullum, John, Hranueli, Daslav, Orlic, Sandi, Zucko, Jurica
Published in Food technology and biotechnology (01.06.2018)
Published in Food technology and biotechnology (01.06.2018)
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Journal Article
Genetics of Streptomyces rimosus, the Oxytetracycline Producer
Petković, Hrvoje, Cullum, John, Hranueli, Daslav, Hunter, Iain S., Perić-Concha, Nataša, Pigac, Jasenka, Thamchaipenet, Arinthip, Vujaklija, Dušica, Long, Paul F.
Published in Microbiology and Molecular Biology Reviews (01.09.2006)
Published in Microbiology and Molecular Biology Reviews (01.09.2006)
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Journal Article
Gene expression in the scleractinian Acropora microphthalma exposed to high solar irradiance reveals elements of photoprotection and coral bleaching
Starcevic, Antonio, Dunlap, Walter C, Cullum, John, Shick, J Malcolm, Hranueli, Daslav, Long, Paul F
Published in PloS one (12.11.2010)
Published in PloS one (12.11.2010)
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Journal Article
Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria
Zucko, Jurica, Dunlap, Walter C, Shick, J Malcolm, Cullum, John, Cercelet, François, Amin, Bijal, Hammen, Lena, Lau, Timothy, Williams, Jamal, Hranueli, Daslav, Long, Paul F
Published in BMC genomics (11.11.2010)
Published in BMC genomics (11.11.2010)
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Journal Article
Annotation of the Modular Polyketide Synthase and Nonribosomal Peptide Synthetase Gene Clusters in the Genome of Streptomyces tsukubaensis NRRL18488
BLAZIC, Marko, STARCEVIC, Antonio, HRANUELI, Daslav, ZUCKO, Jurica, LISFI, Mohamed, BARANASIC, Damir, GORANOVIC, Dušan, FUJS, Stefan, KUSCER, Enej, KOSEC, Gregor, PETKOVIC, Hrvoje, CULLUM, John
Published in Applied and Environmental Microbiology (01.12.2012)
Published in Applied and Environmental Microbiology (01.12.2012)
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Journal Article
MEGGASENSE - The Metagenome/Genome Annotated Sequence Natural Language Search Engine: A Platform for the Construction of Sequence Data Warehouses
Gacesa, Ranko, Zucko, Jurica, Petursdottir, Solveig K, Gudmundsdottir, Elisabet Eik, Fridjonsson, Olafur H, Diminic, Janko, Long, Paul F, Cullum, John, Hranueli, Daslav, Hreggvidsson, Gudmundur O, Starcevic, Antonio
Published in Food technology and biotechnology (01.04.2017)
Published in Food technology and biotechnology (01.04.2017)
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Journal Article
Evolutionary dynamics of modular polyketide synthases, with implications for protein design and engineering
Zucko, Jurica, Cullum, John, Hranueli, Daslav, Long, Paul F
Published in Journal of antibiotics (01.01.2011)
Published in Journal of antibiotics (01.01.2011)
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Journal Article
Plasticity of the Streptomyces Genome-Evolution and Engineering of New Antibiotics
HRANUELI, Daslav, CULLUM, John, BASRAK, Bojan, GOLDSTEIN, Pavle, LONG, Paul F
Published in Current medicinal chemistry (01.07.2005)
Published in Current medicinal chemistry (01.07.2005)
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Journal Article
Spontaneity in the patellamide biosynthetic pathway
Milne, Bruce F, Long, Paul F, Starcevic, Antonio, Hranueli, Daslav, Jaspars, Marcel
Published in Organic & biomolecular chemistry (21.02.2006)
Published in Organic & biomolecular chemistry (21.02.2006)
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Journal Article
Ablation of the otcC Gene Encoding a Post-polyketide Hydroxylase from the Oxytetracyline Biosynthetic Pathway in Streptomyces rimosus Results in Novel Polyketides with Altered Chain Length
Perić-Concha, Nataša, Borovička, Branko, Long, Paul F., Hranueli, Daslav, Waterman, Peter G., Hunter, Iain S.
Published in The Journal of biological chemistry (11.11.2005)
Published in The Journal of biological chemistry (11.11.2005)
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Journal Article
Synthetic biology: a novel approach for the construction of industrial microorganisms
Hranueli, Daslav, Starcevic, Antonio, Zucko, Jurica, Rojas, Juan Diego, Diminic, Janko, Baranasic, Damir, Gacesa, Ranko, Padilla, Gabriel, Long, Paul F, Cullum, John
Published in Food technology and biotechnology (01.01.2013)
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Published in Food technology and biotechnology (01.01.2013)
Journal Article
Clustering of protein domains for functional and evolutionary studies
Goldstein, Pavle, Zucko, Jurica, Vujaklija, Dusica, Krisko, Anita, Hranueli, Daslav, Long, Paul F, Etchebest, Catherine, Basrak, Bojan, Cullum, John
Published in BMC bioinformatics (15.10.2009)
Published in BMC bioinformatics (15.10.2009)
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Journal Article
From DNA sequences to chemical structures--methods for mining microbial genomic and metagenomic data sets for new natural products
Zucko, Jurica, Starcevic, Antonio, Diminic, Janko, Elbekali, Mouhsine, Lisfi, Mohamed, Long, Paul F, Cullum, John, Hranueli, Daslav
Published in Food technology and biotechnology (01.04.2010)
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Published in Food technology and biotechnology (01.04.2010)
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