Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
KOZICH, James J, WESTCOTT, Sarah L, BAXTER, Nielson T, HIGHLANDER, Sarah K, SCHLOSS, Patrick D
Published in Applied and Environmental Microbiology (01.09.2013)
Published in Applied and Environmental Microbiology (01.09.2013)
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Gut Microbiome-Based Metagenomic Signature for Non-invasive Detection of Advanced Fibrosis in Human Nonalcoholic Fatty Liver Disease
Loomba, Rohit, Seguritan, Victor, Li, Weizhong, Long, Tao, Klitgord, Niels, Bhatt, Archana, Dulai, Parambir Singh, Caussy, Cyrielle, Bettencourt, Richele, Highlander, Sarah K., Jones, Marcus B., Sirlin, Claude B., Schnabl, Bernd, Brinkac, Lauren, Schork, Nicholas, Chen, Chi-Hua, Brenner, David A., Biggs, William, Yooseph, Shibu, Venter, J. Craig, Nelson, Karen E.
Published in Cell metabolism (02.05.2017)
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Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
Haas, Brian J, Gevers, Dirk, Earl, Ashlee M, Feldgarden, Mike, Ward, Doyle V, Giannoukos, Georgia, Ciulla, Dawn, Tabbaa, Diana, Highlander, Sarah K, Sodergren, Erica, Methé, Barbara, DeSantis, Todd Z, Petrosino, Joseph F, Knight, Rob, Birren, Bruce W
Published in Genome research (01.03.2011)
Published in Genome research (01.03.2011)
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Host Genetic Control of the Oral Microbiome in Health and Disease
Gomez, Andres, Espinoza, Josh L., Harkins, Derek M., Leong, Pamela, Saffery, Richard, Bockmann, Michelle, Torralba, Manolito, Kuelbs, Claire, Kodukula, Rohith, Inman, Jason, Hughes, Toby, Craig, Jeffrey M., Highlander, Sarah K., Jones, Marcus B., Dupont, Chris L., Nelson, Karen E.
Published in Cell host & microbe (13.09.2017)
Published in Cell host & microbe (13.09.2017)
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Library preparation methodology can influence genomic and functional predictions in human microbiome research
Jones, Marcus B., Highlander, Sarah K., Anderson, Ericka L., Li, Weizhong, Dayrit, Mark, Klitgord, Niels, Fabani, Martin M., Seguritan, Victor, Green, Jessica, Pride, David T., Yooseph, Shibu, Biggs, William, Nelson, Karen E., Venter, J. Craig
Published in Proceedings of the National Academy of Sciences - PNAS (10.11.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (10.11.2015)
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Multi-faceted metagenomic analysis of spacecraft associated surfaces reveal planetary protection relevant microbial composition
Highlander, Sarah K, Wood, Jason M, Gillece, John D, Folkerts, Megan, Fofanov, Viacheslav, Furstenau, Tara, Singh, Nitin K, Guan, Lisa, Seuylemezian, Arman, Benardini, James N, Engelthaler, David M, Venkateswaran, Kasthuri, Keim, Paul S
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Published in PloS one (22.03.2023)
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Gut Microbiome-Based Metagenomic Signature for Non-invasive Detection of Advanced Fibrosis in Human Nonalcoholic Fatty Liver Disease
Loomba, Rohit, Seguritan, Victor, Li, Weizhong, Long, Tao, Klitgord, Niels, Bhatt, Archana, Dulai, Parambir Singh, Caussy, Cyrielle, Bettencourt, Richele, Highlander, Sarah K., Jones, Marcus B., Sirlin, Claude B., Schnabl, Bernd, Brinkac, Lauren, Schork, Nicholas, Chen, Chi-Hua, Brenner, David A., Biggs, William, Yooseph, Shibu, Venter, J. Craig, Nelson, Karen E.
Published in Cell metabolism (03.09.2019)
Published in Cell metabolism (03.09.2019)
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Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system
Schloss, Patrick D, Jenior, Matthew L, Koumpouras, Charles C, Westcott, Sarah L, Highlander, Sarah K
Published in PeerJ (San Francisco, CA) (28.03.2016)
Published in PeerJ (San Francisco, CA) (28.03.2016)
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Supragingival Plaque Microbiome Ecology and Functional Potential in the Context of Health and Disease
Espinoza, Josh L, Harkins, Derek M, Torralba, Manolito, Gomez, Andres, Highlander, Sarah K, Jones, Marcus B, Leong, Pamela, Saffery, Richard, Bockmann, Michelle, Kuelbs, Claire, Inman, Jason M, Hughes, Toby, Craig, Jeffrey M, Nelson, Karen E, Dupont, Chris L
Published in mBio (27.11.2018)
Published in mBio (27.11.2018)
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Characterization of the human gut microbiome during travelers' diarrhea
Youmans, Bonnie P, Ajami, Nadim J, Jiang, Zhi-Dong, Campbell, Frederick, Wadsworth, W Duncan, Petrosino, Joseph F, DuPont, Herbert L, Highlander, Sarah K
Published in Gut microbes (19.02.2015)
Published in Gut microbes (19.02.2015)
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Phylogenomics and the Dynamic Genome Evolution of the Genus Streptococcus
Richards, Vincent P., Palmer, Sara R., Pavinski Bitar, Paulina D., Qin, Xiang, Weinstock, George M., Highlander, Sarah K., Town, Christopher D., Burne, Robert A., Stanhope, Michael J.
Published in Genome biology and evolution (01.04.2014)
Published in Genome biology and evolution (01.04.2014)
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Large scale variation in Enterococcus faecalis illustrated by the genome analysis of strain OG1RF
Bourgogne, Agathe, Garsin, Danielle A, Qin, Xiang, Singh, Kavindra V, Sillanpaa, Jouko, Yerrapragada, Shailaja, Ding, Yan, Dugan-Rocha, Shannon, Buhay, Christian, Shen, Hua, Chen, Guan, Williams, Gabrielle, Muzny, Donna, Maadani, Arash, Fox, Kristina A, Gioia, Jason, Chen, Lei, Shang, Yue, Arias, Cesar A, Nallapareddy, Sreedhar R, Zhao, Meng, Prakash, Vittal P, Chowdhury, Shahreen, Jiang, Huaiyang, Gibbs, Richard A, Murray, Barbara E, Highlander, Sarah K, Weinstock, George M
Published in Genome biology (08.07.2008)
Published in Genome biology (08.07.2008)
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Analysis of Gut Microbiome Using Explainable Machine Learning Predicts Risk of Diarrhea Associated With Tyrosine Kinase Inhibitor Neratinib: A Pilot Study
Wong, Chi Wah, Yost, Susan E, Lee, Jin Sun, Gillece, John D, Folkerts, Megan, Reining, Lauren, Highlander, Sarah K, Eftekhari, Zahra, Mortimer, Joanne, Yuan, Yuan
Published in Frontiers in oncology (10.03.2021)
Published in Frontiers in oncology (10.03.2021)
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Comparative genomics of Gardnerella vaginalis strains reveals substantial differences in metabolic and virulence potential
Yeoman, Carl J, Yildirim, Suleyman, Thomas, Susan M, Durkin, A Scott, Torralba, Manolito, Sutton, Granger, Buhay, Christian J, Ding, Yan, Dugan-Rocha, Shannon P, Muzny, Donna M, Qin, Xiang, Gibbs, Richard A, Leigh, Steven R, Stumpf, Rebecca, White, Bryan A, Highlander, Sarah K, Nelson, Karen E, Wilson, Brenda A
Published in PloS one (26.08.2010)
Published in PloS one (26.08.2010)
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p300 Serine 89: A Critical Signaling Integrator and Its Effects on Intestinal Homeostasis and Repair
Lai, Keane K Y, Hu, Xiaohui, Chosa, Keisuke, Nguyen, Cu, Lin, David P, Lai, Keith K, Kato, Nobuo, Higuchi, Yusuke, Highlander, Sarah K, Melendez, Elizabeth, Eriguchi, Yoshihiro, Fueger, Patrick T, Ouellette, Andre J, Chimge, Nyam-Osor, Ono, Masaya, Kahn, Michael
Published in Cancers (14.03.2021)
Published in Cancers (14.03.2021)
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Visualization-assisted binning of metagenome assemblies reveals potential new pathogenic profiles in idiopathic travelers' diarrhea
Zhu, Qiyun, Dupont, Christopher L, Jones, Marcus B, Pham, Kevin M, Jiang, Zhi-Dong, DuPont, Herbert L, Highlander, Sarah K
Published in Microbiome (08.11.2018)
Published in Microbiome (08.11.2018)
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Family SES Is Associated with the Gut Microbiome in Infants and Children
Lewis, Candace R, Bonham, Kevin S, McCann, Shelley Hoeft, Volpe, Alexandra R, D'Sa, Viren, Naymik, Marcus, De Both, Matt D, Huentelman, Matthew J, Lemery-Chalfant, Kathryn, Highlander, Sarah K, Deoni, Sean C L, Klepac-Ceraj, Vanja
Published in Microorganisms (Basel) (28.07.2021)
Published in Microorganisms (Basel) (28.07.2021)
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Complete Genome Sequence of Rickettsia typhi and Comparison with Sequences of Other Rickettsiae
MCLEOD, Michael P, XIANG QIN, HAWES, Alicia C, SODERGREN, Erica, GILL, Rachel, HUME, Jennifer, MORGAN, Maggie, GUANGWEI FAN, AMIN, Anita G, GIBBS, Richard A, CHAO HONG, YU, Xue-Jie, KARPATHY, Sandor E, WALKER, David H, WEINSTOCK, George M, GIOIA, Jason, HIGHLANDER, Sarah K, FOX, George E, MCNEILL, Thomas Z, HUAIYANG JIANG, MUZNY, Donna, JACOB, Leni S
Published in Journal of Bacteriology (01.09.2004)
Published in Journal of Bacteriology (01.09.2004)
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Nivolumab plus ipilimumab with or without live bacterial supplementation in metastatic renal cell carcinoma: a randomized phase 1 trial
Dizman, Nazli, Meza, Luis, Bergerot, Paulo, Alcantara, Marice, Dorff, Tanya, Lyou, Yung, Frankel, Paul, Cui, Yujie, Mira, Valerie, Llamas, Marian, Hsu, Joann, Zengin, Zeynep, Salgia, Nicholas, Salgia, Sabrina, Malhotra, Jasnoor, Chawla, Neal, Chehrazi-Raffle, Alex, Muddasani, Ramya, Gillece, John, Reining, Lauren, Trent, Jeff, Takahashi, Motomichi, Oka, Kentaro, Higashi, Seiya, Kortylewski, Marcin, Highlander, Sarah K., Pal, Sumanta K.
Published in Nature medicine (01.04.2022)
Published in Nature medicine (01.04.2022)
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