COVID-19 Coronavirus Vaccine Design Using Reverse Vaccinology and Machine Learning
Ong, Edison, Wong, Mei U, Huffman, Anthony, He, Yongqun
Published in Frontiers in immunology (03.07.2020)
Published in Frontiers in immunology (03.07.2020)
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Journal Article
VRprofile: gene-cluster-detection-based profiling of virulence and antibiotic resistance traits encoded within genome sequences of pathogenic bacteria
Li, Jun, Tai, Cui, Deng, Zixin, Zhong, Weihong, He, Yongqun, Ou, Hong-Yu
Published in Briefings in bioinformatics (01.07.2018)
Published in Briefings in bioinformatics (01.07.2018)
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Journal Article
Victors: a web-based knowledge base of virulence factors in human and animal pathogens
Sayers, Samantha, Li, Li, Ong, Edison, Deng, Shunzhou, Fu, Guanghua, Lin, Yu, Yang, Brian, Zhang, Shelley, Fa, Zhenzong, Zhao, Bin, Xiang, Zuoshuang, Li, Yongqing, Zhao, Xing-Ming, Olszewski, Michal A, Chen, Luonan, He, Yongqun
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
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Journal Article
Endoplasmic Reticulum Stress Activates the Inflammasome via NLRP3- and Caspase-2-Driven Mitochondrial Damage
Bronner, Denise N., Abuaita, Basel H., Chen, Xiaoyun, Fitzgerald, Katherine A., Nuñez, Gabriel, He, Yongqun, Yin, Xiao-Ming, O’Riordan, Mary X.D.
Published in Immunity (Cambridge, Mass.) (15.09.2015)
Published in Immunity (Cambridge, Mass.) (15.09.2015)
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Journal Article
Ontology-based Precision Vaccinology for Deep Mechanism Understanding and Precision Vaccine Development
Xie, Jiangan, Zi, Wenrui, Li, Zhangyong, He, Yongqun
Published in Current pharmaceutical design (01.01.2021)
Published in Current pharmaceutical design (01.01.2021)
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Journal Article
Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration
Ong, Edison, Xiang, Zuoshuang, Zhao, Bin, Liu, Yue, Lin, Yu, Zheng, Jie, Mungall, Chris, Courtot, Mélanie, Ruttenberg, Alan, He, Yongqun
Published in Nucleic acids research (04.01.2017)
Published in Nucleic acids research (04.01.2017)
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Journal Article
The Ontology for Biomedical Investigations
Bandrowski, Anita, Brinkman, Ryan, Brochhausen, Mathias, Brush, Matthew H, Bug, Bill, Chibucos, Marcus C, Clancy, Kevin, Courtot, Mélanie, Derom, Dirk, Dumontier, Michel, Fan, Liju, Fostel, Jennifer, Fragoso, Gilberto, Gibson, Frank, Gonzalez-Beltran, Alejandra, Haendel, Melissa A, He, Yongqun, Heiskanen, Mervi, Hernandez-Boussard, Tina, Jensen, Mark, Lin, Yu, Lister, Allyson L, Lord, Phillip, Malone, James, Manduchi, Elisabetta, McGee, Monnie, Morrison, Norman, Overton, James A, Parkinson, Helen, Peters, Bjoern, Rocca-Serra, Philippe, Ruttenberg, Alan, Sansone, Susanna-Assunta, Scheuermann, Richard H, Schober, Daniel, Smith, Barry, Soldatova, Larisa N, Stoeckert, Jr, Christian J, Taylor, Chris F, Torniai, Carlo, Turner, Jessica A, Vita, Randi, Whetzel, Patricia L, Zheng, Jie
Published in PloS one (29.04.2016)
Published in PloS one (29.04.2016)
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Journal Article
Big knowledge visualization of the COVID-19 CIDO ontology evolution
Zheng, Ling, Perl, Yehoshua, He, Yongqun
Published in BMC medical informatics and decision making (09.05.2023)
Published in BMC medical informatics and decision making (09.05.2023)
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Journal Article
Editorial: Host cellular responses to viruses
He, Yongqun, Li, Yongqing, Cao, Yongchang, Liu, Jue
Published in Frontiers in microbiology (10.01.2023)
Published in Frontiers in microbiology (10.01.2023)
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Journal Article
Machine learning-based identification and rule-based normalization of adverse drug reactions in drug labels
Tiftikci, Mert, Özgür, Arzucan, He, Yongqun, Hur, Junguk
Published in BMC bioinformatics (23.12.2019)
Published in BMC bioinformatics (23.12.2019)
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Journal Article
Ontology-based taxonomical analysis of experimentally verified natural and laboratory human coronavirus hosts and its implication for COVID-19 virus origination and transmission
Wang, Yang, Ye, Muhui, Zhang, Fengwei, Freeman, Zachary Thomas, Yu, Hong, Ye, Xianwei, He, Yongqun
Published in PloS one (22.01.2024)
Published in PloS one (22.01.2024)
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Journal Article
CIDO, a community-based ontology for coronavirus disease knowledge and data integration, sharing, and analysis
He, Yongqun, Yu, Hong, Ong, Edison, Wang, Yang, Liu, Yingtong, Huffman, Anthony, Huang, Hsin-hui, Beverley, John, Hur, Junguk, Yang, Xiaolin, Chen, Luonan, Omenn, Gilbert S., Athey, Brian, Smith, Barry
Published in Scientific data (12.06.2020)
Published in Scientific data (12.06.2020)
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Anatomical structures, cell types and biomarkers of the Human Reference Atlas
Börner, Katy, Teichmann, Sarah A., Quardokus, Ellen M., Gee, James C., Browne, Kristen, Osumi-Sutherland, David, Herr, Bruce W., Bueckle, Andreas, Paul, Hrishikesh, Haniffa, Muzlifah, Jardine, Laura, Bernard, Amy, Ding, Song-Lin, Miller, Jeremy A., Lin, Shin, Halushka, Marc K., Boppana, Avinash, Longacre, Teri A., Hickey, John, Lin, Yiing, Valerius, M. Todd, He, Yongqun, Pryhuber, Gloria, Sun, Xin, Jorgensen, Marda, Radtke, Andrea J., Wasserfall, Clive, Ginty, Fiona, Ho, Jonhan, Sunshine, Joel, Beuschel, Rebecca T., Brusko, Maigan, Lee, Sujin, Malhotra, Rajeev, Jain, Sanjay, Weber, Griffin
Published in Nature cell biology (01.11.2021)
Published in Nature cell biology (01.11.2021)
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Journal Article
VIO: ontology classification and study of vaccine responses given various experimental and analytical conditions
Ong, Edison, Sun, Peter, Berke, Kimberly, Zheng, Jie, Wu, Guanming, He, Yongqun
Published in BMC bioinformatics (23.12.2019)
Published in BMC bioinformatics (23.12.2019)
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