Update of the FANTOM web resource: expansion to provide additional transcriptome atlases
Lizio, Marina, Abugessaisa, Imad, Noguchi, Shuhei, Kondo, Atsushi, Hasegawa, Akira, Hon, Chung Chau, de Hoon, Michiel, Severin, Jessica, Oki, Shinya, Hayashizaki, Yoshihide, Carninci, Piero, Kasukawa, Takeya, Kawaji, Hideya
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
Get full text
Journal Article
Bone Marrow Adipocytes Facilitate Fatty Acid Oxidation Activating AMPK and a Transcriptional Network Supporting Survival of Acute Monocytic Leukemia Cells
Tabe, Yoko, Yamamoto, Shinichi, Saitoh, Kaori, Sekihara, Kazumasa, Monma, Norikazu, Ikeo, Kazuho, Mogushi, Kaoru, Shikami, Masato, Ruvolo, Vivian, Ishizawa, Jo, Hail, Jr, Numsen, Kazuno, Saiko, Igarashi, Mamoru, Matsushita, Hiromichi, Yamanaka, Yasunari, Arai, Hajime, Nagaoka, Isao, Miida, Takashi, Hayashizaki, Yoshihide, Konopleva, Marina, Andreeff, Michael
Published in Cancer research (Chicago, Ill.) (15.03.2017)
Published in Cancer research (Chicago, Ill.) (15.03.2017)
Get full text
Journal Article
An atlas of active enhancers across human cell types and tissues
Andersson, Robin, Gebhard, Claudia, Miguel-Escalada, Irene, Hoof, Ilka, Bornholdt, Jette, Boyd, Mette, Chen, Yun, Zhao, Xiaobei, Schmidl, Christian, Suzuki, Takahiro, Ntini, Evgenia, Arner, Erik, Valen, Eivind, Li, Kang, Schwarzfischer, Lucia, Glatz, Dagmar, Raithel, Johanna, Lilje, Berit, Rapin, Nicolas, Bagger, Frederik Otzen, Jørgensen, Mette, Andersen, Peter Refsing, Bertin, Nicolas, Rackham, Owen, Burroughs, A. Maxwell, Baillie, J. Kenneth, Ishizu, Yuri, Shimizu, Yuri, Furuhata, Erina, Maeda, Shiori, Negishi, Yutaka, Mungall, Christopher J., Meehan, Terrence F., Lassmann, Timo, Itoh, Masayoshi, Kawaji, Hideya, Kondo, Naoto, Kawai, Jun, Lennartsson, Andreas, Daub, Carsten O., Heutink, Peter, Hume, David A., Jensen, Torben Heick, Suzuki, Harukazu, Hayashizaki, Yoshihide, Müller, Ferenc, Forrest, Alistair R. R., Carninci, Piero, Rehli, Michael, Sandelin, Albin
Published in Nature (London) (27.03.2014)
Published in Nature (London) (27.03.2014)
Get full text
Journal Article
CDK1 dependent phosphorylation of hTERT contributes to cancer progression
Yasukawa, Mami, Ando, Yoshinari, Yamashita, Taro, Matsuda, Yoko, Shoji, Shisako, Morioka, Masaki Suimye, Kawaji, Hideya, Shiozawa, Kumiko, Machitani, Mitsuhiro, Abe, Takaya, Yamada, Shinji, Kaneko, Mika K., Kato, Yukinari, Furuta, Yasuhide, Kondo, Tadashi, Shirouzu, Mikako, Hayashizaki, Yoshihide, Kaneko, Shuichi, Masutomi, Kenkichi
Published in Nature communications (25.03.2020)
Published in Nature communications (25.03.2020)
Get full text
Journal Article
Gateways to the FANTOM5 promoter level mammalian expression atlas
Lizio, Marina, Harshbarger, Jayson, Shimoji, Hisashi, Severin, Jessica, Kasukawa, Takeya, Sahin, Serkan, Abugessaisa, Imad, Fukuda, Shiro, Hori, Fumi, Ishikawa-Kato, Sachi, Mungall, Christopher J, Arner, Erik, Baillie, J Kenneth, Bertin, Nicolas, Bono, Hidemasa, de Hoon, Michiel, Diehl, Alexander D, Dimont, Emmanuel, Freeman, Tom C, Fujieda, Kaori, Hide, Winston, Kaliyaperumal, Rajaram, Katayama, Toshiaki, Lassmann, Timo, Meehan, Terrence F, Nishikata, Koro, Ono, Hiromasa, Rehli, Michael, Sandelin, Albin, Schultes, Erik A, 't Hoen, Peter A C, Tatum, Zuotian, Thompson, Mark, Toyoda, Tetsuro, Wright, Derek W, Daub, Carsten O, Itoh, Masayoshi, Carninci, Piero, Hayashizaki, Yoshihide, Forrest, Alistair R R, Kawaji, Hideya
Published in Genome Biology (05.01.2015)
Published in Genome Biology (05.01.2015)
Get full text
Journal Article
Redefinition of the human mast cell transcriptome by deep-CAGE sequencing
Motakis, Efthymios, Guhl, Sven, Ishizu, Yuri, Itoh, Masayoshi, Kawaji, Hideya, de Hoon, Michiel, Lassmann, Timo, Carninci, Piero, Hayashizaki, Yoshihide, Zuberbier, Torsten, Forrest, Alistair R.R., Babina, Magda
Published in Blood (24.04.2014)
Published in Blood (24.04.2014)
Get full text
Journal Article
Small RNAs derived from snoRNAs
Taft, Ryan J, Glazov, Evgeny A, Lassmann, Timo, Hayashizaki, Yoshihide, Carninci, Piero, Mattick, John S
Published in RNA (Cambridge) (01.07.2009)
Published in RNA (Cambridge) (01.07.2009)
Get full text
Journal Article
Next-generation sequencing-based small RNA profiling of cerebrospinal fluid exosomes
Yagi, Yohsuke, Ohkubo, Takuya, Kawaji, Hideya, Machida, Akira, Miyata, Haruka, Goda, Saori, Roy, Sugata, Hayashizaki, Yoshihide, Suzuki, Harukazu, Yokota, Takanori
Published in Neuroscience letters (01.01.2017)
Published in Neuroscience letters (01.01.2017)
Get full text
Journal Article
Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation
Fraser, James, Ferrai, Carmelo, Chiariello, Andrea M, Schueler, Markus, Rito, Tiago, Laudanno, Giovanni, Barbieri, Mariano, Moore, Benjamin L, Kraemer, Dorothee CA, Aitken, Stuart, Xie, Sheila Q, Morris, Kelly J, Itoh, Masayoshi, Kawaji, Hideya, Jaeger, Ines, Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair RR, Semple, Colin A, Dostie, Josée, Pombo, Ana, Nicodemi, Mario
Published in Molecular systems biology (01.12.2015)
Published in Molecular systems biology (01.12.2015)
Get full text
Journal Article
Deep phenotyping of myalgic encephalomyelitis/chronic fatigue syndrome in Japanese population
Kitami, Toshimori, Fukuda, Sanae, Kato, Tamotsu, Yamaguti, Kouzi, Nakatomi, Yasuhito, Yamano, Emi, Kataoka, Yosky, Mizuno, Kei, Tsuboi, Yuuri, Kogo, Yasushi, Suzuki, Harukazu, Itoh, Masayoshi, Morioka, Masaki Suimye, Kawaji, Hideya, Koseki, Haruhiko, Kikuchi, Jun, Hayashizaki, Yoshihide, Ohno, Hiroshi, Kuratsune, Hirohiko, Watanabe, Yasuyoshi
Published in Scientific reports (16.11.2020)
Published in Scientific reports (16.11.2020)
Get full text
Journal Article
A predictive computational framework for direct reprogramming between human cell types
Rackham, Owen J L, Firas, Jaber, Fang, Hai, Oates, Matt E, Holmes, Melissa L, Knaupp, Anja S, Suzuki, Harukazu, Nefzger, Christian M, Daub, Carsten O, Shin, Jay W, Petretto, Enrico, Forrest, Alistair R R, Hayashizaki, Yoshihide, Polo, Jose M, Gough, Julian
Published in Nature genetics (01.03.2016)
Published in Nature genetics (01.03.2016)
Get full text
Journal Article
NET-CAGE characterizes the dynamics and topology of human transcribed cis-regulatory elements
Hirabayashi, Shigeki, Bhagat, Shruti, Matsuki, Yu, Takegami, Yujiro, Uehata, Takuya, Kanemaru, Ai, Itoh, Masayoshi, Shirakawa, Kotaro, Takaori-Kondo, Akifumi, Takeuchi, Osamu, Carninci, Piero, Katayama, Shintaro, Hayashizaki, Yoshihide, Kere, Juha, Kawaji, Hideya, Murakawa, Yasuhiro
Published in Nature genetics (01.09.2019)
Published in Nature genetics (01.09.2019)
Get full text
Journal Article
Mammalian RNA polymerase II core promoters: insights from genome-wide studies
Hume, David A, Sandelin, Albin, Carninci, Piero, Lenhard, Boris, Ponjavic, Jasmina, Hayashizaki, Yoshihide
Published in Nature reviews. Genetics (01.06.2007)
Published in Nature reviews. Genetics (01.06.2007)
Get full text
Journal Article
Hidden layers of human small RNAs
Kawaji, Hideya, Nakamura, Mari, Takahashi, Yukari, Sandelin, Albin, Katayama, Shintaro, Fukuda, Shiro, Daub, Carsten O, Kai, Chikatoshi, Kawai, Jun, Yasuda, Jun, Carninci, Piero, Hayashizaki, Yoshihide
Published in BMC genomics (10.04.2008)
Published in BMC genomics (10.04.2008)
Get full text
Journal Article
FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs
Abugessaisa, Imad, Ramilowski, Jordan A, Lizio, Marina, Severin, Jesicca, Hasegawa, Akira, Harshbarger, Jayson, Kondo, Atsushi, Noguchi, Shuhei, Yip, Chi Wai, Ooi, Jasmine Li Ching, Tagami, Michihira, Hori, Fumi, Agrawal, Saumya, Hon, Chung Chau, Cardon, Melissa, Ikeda, Shuya, Ono, Hiromasa, Bono, Hidemasa, Kato, Masaki, Hashimoto, Kosuke, Bonetti, Alessandro, Kato, Masaki, Kobayashi, Norio, Shin, Jay, de Hoon, Michiel, Hayashizaki, Yoshihide, Carninci, Piero, Kawaji, Hideya, Kasukawa, Takeya
Published in Nucleic acids research (08.01.2021)
Published in Nucleic acids research (08.01.2021)
Get full text
Journal Article
Genome sequence and analysis of the Japanese morning glory Ipomoea nil
Hoshino, Atsushi, Jayakumar, Vasanthan, Nitasaka, Eiji, Toyoda, Atsushi, Noguchi, Hideki, Itoh, Takehiko, Shin-I, Tadasu, Minakuchi, Yohei, Koda, Yuki, Nagano, Atsushi J., Yasugi, Masaki, Honjo, Mie N., Kudoh, Hiroshi, Seki, Motoaki, Kamiya, Asako, Shiraki, Toshiyuki, Carninci, Piero, Asamizu, Erika, Nishide, Hiroyo, Tanaka, Sachiko, Park, Kyeung-Il, Morita, Yasumasa, Yokoyama, Kohei, Uchiyama, Ikuo, Tanaka, Yoshikazu, Tabata, Satoshi, Shinozaki, Kazuo, Hayashizaki, Yoshihide, Kohara, Yuji, Suzuki, Yutaka, Sugano, Sumio, Fujiyama, Asao, Iida, Shigeru, Sakakibara, Yasubumi
Published in Nature communications (08.11.2016)
Published in Nature communications (08.11.2016)
Get full text
Journal Article
Interactive visualization and analysis of large-scale sequencing datasets using ZENBU
Severin, Jessica, Lizio, Marina, Harshbarger, Jayson, Kawaji, Hideya, Daub, Carsten O, Hayashizaki, Yoshihide, Bertin, Nicolas, Forrest, Alistair R R
Published in Nature biotechnology (01.03.2014)
Published in Nature biotechnology (01.03.2014)
Get full text
Journal Article
A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness
Burroughs, A Maxwell, Ando, Yoshinari, de Hoon, Michiel J L, Tomaru, Yasuhiro, Nishibu, Takahiro, Ukekawa, Ryo, Funakoshi, Taku, Kurokawa, Tsutomu, Suzuki, Harukazu, Hayashizaki, Yoshihide, Daub, Carsten O
Published in Genome research (01.10.2010)
Published in Genome research (01.10.2010)
Get full text
Journal Article