The combination of gene perturbation assay and ChIP-chip reveals functional direct target genes for IRF8 in THP-1 cells
Kubosaki, Atsutaka, Lindgren, Gabriella, Tagami, Michihira, Simon, Christophe, Tomaru, Yasuhiro, Miura, Hisashi, Suzuki, Takahiro, Arner, Erik, Forrest, Alistair R.R., Irvine, Katharine M., Schroder, Kate, Hasegawa, Yuki, Kanamori-Katayama, Mutsumi, Rehli, Michael, Hume, David A., Kawai, Jun, Suzuki, Masanori, Suzuki, Harukazu, Hayashizaki, Yoshihide
Published in Molecular immunology (01.08.2010)
Published in Molecular immunology (01.08.2010)
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SDRF2GRAPH – a visualization tool of a spreadsheet-based description of experimental processes
Kawaji, Hideya, Hayashizaki, Yoshihide, Daub, Carsten O
Published in BMC bioinformatics (07.05.2009)
Published in BMC bioinformatics (07.05.2009)
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Genetic control of the innate immune response
Wells, Christine A, Ravasi, Timothy, Faulkner, Geoffrey J, Carninci, Piero, Okazaki, Yasushi, Hayashizaki, Yoshihide, Sweet, Matthew, Wainwright, Brandon J, Hume, David A
Published in BMC immunology (26.06.2003)
Published in BMC immunology (26.06.2003)
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Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE
Vitezic, Morana, Lassmann, Timo, Forrest, Alistair R.R, Suzuki, Masanori, Tomaru, Yasuhiro, Kawai, Jun, Carninci, Piero, Suzuki, Harukazu, Hayashizaki, Yoshihide, Daub, Carsten O
Published in Nucleic acids research (01.12.2010)
Published in Nucleic acids research (01.12.2010)
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Discovery of imprinted transcripts in the mouse transcriptome using large-scale expression profiling
Nikaido, Itoshi, Saito, Chika, Mizuno, Yosuke, Meguro, Makiko, Bono, Hidemasa, Kadomura, Moritoshi, Kono, Tomohiro, Morris, Gerard A, Lyons, Paul A, Oshimura, Mitsuo, Hayashizaki, Yoshihide, Okazaki, Yasushi
Published in Genome research (01.06.2003)
Published in Genome research (01.06.2003)
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Thermostabilization and Thermoactivation of Thermolabile Enzymes by Trehalose and Its Application for the Synthesis of Full Length cDNA
Carninci, Piero, Nishiyama, Yoko, Westover, Arthur, Itoh, Masayoshi, Nagaoka, Sumiharu, Sasaki, Nobuya, Okazaki, Yasushi, Muramatsu, Masami, Hayashizaki, Yoshihide
Published in Proceedings of the National Academy of Sciences - PNAS (20.01.1998)
Published in Proceedings of the National Academy of Sciences - PNAS (20.01.1998)
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Gene Discovery in Genetically Labeled Single Dopaminergic Neurons of the Retina
Gustincich, Stefano, Contini, Massimo, Gariboldi, Manuela, Puopolo, Michelino, Kadota, Koji, Bono, Hidemasa, LeMieux, Julianna, Walsh, Pamela, Carninci, Piero, Hayashizaki, Yoshihide, Okazaki, Yasushi, Raviola, Elio, Hubel, David H.
Published in Proceedings of the National Academy of Sciences - PNAS (06.04.2004)
Published in Proceedings of the National Academy of Sciences - PNAS (06.04.2004)
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Discrimination of Non-Protein-Coding Transcripts from Protein-Coding mRNA
Frith, Martin C., Bailey, Timothy L., Kasukawa, Takeya, Mignone, Flavio, Kummerfeld, Sarah K., Madera, Martin, Sunkara, Sirisha, Furuno, Masaaki, Bult, Carol J., Quackenbush, John, Kai, Chikatoshi, Kawai, Jun, Carninci, Piero, Hayashizaki, Yoshihide, Pesole, Graziano, Mattick, John S.
Published in RNA biology (01.01.2006)
Published in RNA biology (01.01.2006)
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Protein-protein interaction panel using mouse full-length cDNAs
Suzuki, H, Fukunishi, Y, Kagawa, I, Saito, R, Oda, H, Endo, T, Kondo, S, Bono, H, Okazaki, Y, Hayashizaki, Y
Published in Genome research (01.10.2001)
Published in Genome research (01.10.2001)
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Crystal Structure of the RUN Domain of the RAP2-interacting Protein x
Kukimoto-Niino, Mutsuko, Takagi, Tetsuo, Akasaka, Ryogo, Murayama, Kazutaka, Uchikubo-Kamo, Tomomi, Terada, Takaho, Inoue, Makoto, Watanabe, Satoru, Tanaka, Akiko, Hayashizaki, Yoshihide, Kigawa, Takanori, Shirouzu, Mikako, Yokoyama, Shigeyuki
Published in The Journal of biological chemistry (20.10.2006)
Published in The Journal of biological chemistry (20.10.2006)
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Pseudo-messenger RNA: phantoms of the transcriptome
Frith, Martin C, Wilming, Laurens G, Forrest, Alistair, Kawaji, Hideya, Tan, Sin Lam, Wahlestedt, Claes, Bajic, Vladimir B, Kai, Chikatoshi, Kawai, Jun, Carninci, Piero, Hayashizaki, Yoshihide, Bailey, Timothy L, Huminiecki, Lukasz
Published in PLoS genetics (01.04.2006)
Published in PLoS genetics (01.04.2006)
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The Crystal Structure of Mouse Nup35 Reveals Atypical RNP Motifs and Novel Homodimerization of the RRM Domain
Handa, Noriko, Kukimoto-Niino, Mutsuko, Akasaka, Ryogo, Kishishita, Seiichiro, Murayama, Kazutaka, Terada, Takaho, Inoue, Makoto, Kigawa, Takanori, Kose, Shingo, Imamoto, Naoko, Tanaka, Akiko, Hayashizaki, Yoshihide, Shirouzu, Mikako, Yokoyama, Shigeyuki
Published in Journal of molecular biology (13.10.2006)
Published in Journal of molecular biology (13.10.2006)
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Comparative analysis of plant and animal calcium signal transduction element using plant full-length cDNA data
Nagata, Toshifumi, Iizumi, Shigemi, Satoh, Kouji, Ooka, Hisako, Kawai, Jun, Carninci, Piero, Hayashizaki, Yoshihide, Otomo, Yasuhiro, Murakami, Kazuo, Matsubara, Kenichi, Kikuchi, Shoshi
Published in Molecular biology and evolution (01.10.2004)
Published in Molecular biology and evolution (01.10.2004)
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Ssdp1 regulates head morphogenesis of mouse embryos by activating the Lim1-Ldb1 complex
Nishioka, Noriyuki, Nagano, Seiichi, Nakayama, Rika, Kiyonari, Hiroshi, Ijiri, Takashi, Taniguchi, Kenichiro, Shawlot, William, Hayashizaki, Yoshihide, Westphal, Heiner, Behringer, Richard R, Matsuda, Yoichi, Sakoda, Saburo, Kondoh, Hisato, Sasaki, Hiroshi
Published in Development (Cambridge) (01.06.2005)
Published in Development (Cambridge) (01.06.2005)
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CCL2 enhances pluripotency of human induced pluripotent stem cells by activating hypoxia related genes
Hasegawa, Yuki, Tang, Dave, Takahashi, Naoko, Hayashizaki, Yoshihide, Forrest, Alistair R. R., the FANTOM consortium, Suzuki, Harukazu
Published in Scientific reports (24.06.2014)
Published in Scientific reports (24.06.2014)
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Constructing ORFeome resources with removable termination codons
Itoh, Masayoshi, Yasunishi, Ayako, Imamura, Kengo, Kanamori-Katayama, Mutsumi, Suzuki, Harukazu, Suzuki, Masanori, Carninci, Piero, Kawai, Jun, Hayashizaki, Yoshihide
Published in BioTechniques (01.07.2006)
Published in BioTechniques (01.07.2006)
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Rapid Screening Assay for KRAS Mutations by the Modified Smart Amplification Process
Tatsumi, Kenji, Mitani, Yasumasa, Watanabe, Jun, Takakura, Hideki, Hoshi, Kanako, Kawai, Yuki, Kikuchi, Takeshi, Kogo, Yasushi, Oguchi-Katayama, Atsuko, Tomaru, Yasuhiro, Kanamori, Hajime, Baba, Masaru, Ishidao, Takefumi, Usui, Kengo, Itoh, Masayoshi, Cizdziel, Paul E, Lezhava, Alexander, Ueda, Michio, Ichikawa, Yasushi, Endo, Itaru, Togo, Shinji, Shimada, Hiroshi, Hayashizaki, Yoshihide
Published in The Journal of molecular diagnostics : JMD (01.11.2008)
Published in The Journal of molecular diagnostics : JMD (01.11.2008)
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Solution Structure of the SEA Domain from the Murine Homologue of Ovarian Cancer Antigen CA125 (MUC16)
Maeda, Takeshi, Inoue, Makoto, Koshiba, Seizo, Yabuki, Takashi, Aoki, Masaaki, Nunokawa, Emi, Seki, Eiko, Matsuda, Takayoshi, Motoda, Yoko, Kobayashi, Atsuo, Hiroyasu, Fumiko, Shirouzu, Mikako, Terada, Takaho, Hayami, Nobuhiro, Ishizuka, Yoshiko, Shinya, Naoko, Tatsuguchi, Ayako, Yoshida, Mayumi, Hirota, Hiroshi, Matsuo, Yo, Tani, Kazutoshi, Arakawa, Takahiro, Carninci, Piero, Kawai, Jun, Hayashizaki, Yoshihide, Kigawa, Takanori, Yokoyama, Shigeyuki
Published in The Journal of biological chemistry (26.03.2004)
Published in The Journal of biological chemistry (26.03.2004)
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