Network-based classification of breast cancer metastasis
Ideker, Trey, Chuang, Han-Yu, Lee, Eunjung, Liu, Yu-Tsueng, Lee, Doheon
Published in Molecular systems biology (2007)
Published in Molecular systems biology (2007)
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ROR1 is expressed in human breast cancer and associated with enhanced tumor-cell growth
Zhang, Suping, Chen, Liguang, Cui, Bing, Chuang, Han-Yu, Yu, Jianqiang, Wang-Rodriguez, Jessica, Tang, Li, Chen, George, Basak, Grzegorz W, Kipps, Thomas J
Published in PloS one (05.03.2012)
Published in PloS one (05.03.2012)
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A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree
Eberle, Michael A, Fritzilas, Epameinondas, Krusche, Peter, Källberg, Morten, Moore, Benjamin L, Bekritsky, Mitchell A, Iqbal, Zamin, Chuang, Han-Yu, Humphray, Sean J, Halpern, Aaron L, Kruglyak, Semyon, Margulies, Elliott H, McVean, Gil, Bentley, David R
Published in Genome research (01.01.2017)
Published in Genome research (01.01.2017)
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Inferring pathway activity toward precise disease classification
Lee, Eunjung, Chuang, Han-Yu, Kim, Jong-Won, Ideker, Trey, Lee, Doheon
Published in PLoS computational biology (01.11.2008)
Published in PLoS computational biology (01.11.2008)
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Journal Article
Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms
Raczy, Come, Petrovski, Roman, Saunders, Christopher T, Chorny, Ilya, Kruglyak, Semyon, Margulies, Elliott H, Chuang, Han-Yu, Källberg, Morten, Kumar, Swathi A, Liao, Arnold, Little, Kristina M, Strömberg, Michael P, Tanner, Stephen W
Published in Bioinformatics (15.08.2013)
Published in Bioinformatics (15.08.2013)
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Development and Validation of an Ultradeep Next-Generation Sequencing Assay for Testing of Plasma Cell-Free DNA from Patients with Advanced Cancer
Janku, Filip, Zhang, Shile, Waters, Jill, Liu, Li, Huang, Helen J, Subbiah, Vivek, Hong, David S, Karp, Daniel D, Fu, Siqing, Cai, Xuyu, Ramzanali, Nishma M, Madwani, Kiran, Cabrilo, Goran, Andrews, Debra L, Zhao, Yue, Javle, Milind, Kopetz, E Scott, Luthra, Rajyalakshmi, Kim, Hyunsung J, Gnerre, Sante, Satya, Ravi Vijaya, Chuang, Han-Yu, Kruglyak, Kristina M, Toung, Jonathan, Zhao, Chen, Shen, Richard, Heymach, John V, Meric-Bernstam, Funda, Mills, Gordon B, Fan, Jian-Bing, Salathia, Neeraj S
Published in Clinical cancer research (15.09.2017)
Published in Clinical cancer research (15.09.2017)
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The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes
Overbeek, Ross, Begley, Tadhg, Butler, Ralph M., Choudhuri, Jomuna V., Chuang, Han-Yu, Cohoon, Matthew, de Crécy-Lagard, Valérie, Diaz, Naryttza, Disz, Terry, Edwards, Robert, Fonstein, Michael, Frank, Ed D., Gerdes, Svetlana, Glass, Elizabeth M., Goesmann, Alexander, Hanson, Andrew, Iwata-Reuyl, Dirk, Jensen, Roy, Jamshidi, Neema, Krause, Lutz, Kubal, Michael, Larsen, Niels, Linke, Burkhard, McHardy, Alice C., Meyer, Folker, Neuweger, Heiko, Olsen, Gary, Olson, Robert, Osterman, Andrei, Portnoy, Vasiliy, Pusch, Gordon D., Rodionov, Dmitry A., Rückert, Christian, Steiner, Jason, Stevens, Rick, Thiele, Ines, Vassieva, Olga, Ye, Yuzhen, Zagnitko, Olga, Vonstein, Veronika
Published in Nucleic acids research (01.01.2005)
Published in Nucleic acids research (01.01.2005)
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Journal Article
Whole-genome haplotyping by dilution, amplification, and sequencing
Kaper, Fiona, Swamy, Sajani, Klotzle, Brandy, Munchel, Sarah, Cottrell, Joseph, Bibikova, Marina, Chuang, Han-Yu, Kruglyak, Semyon, Ronaghi, Mostafa, Eberle, Michael A., Fan, Jian-Bing
Published in Proceedings of the National Academy of Sciences - PNAS (02.04.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (02.04.2013)
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Journal Article
Genomic analysis across 53 canine cancer types reveals novel mutations and high clinical actionability potential
Sakthikumar, Sharadha, Warrier, Manisha, Whitley, Derick, Facista, Salvatore, Adkins, Jonathan, Aman, Sara, Tsinajinnie, Darwin, Duran, Natalie, Siravegna, Giulia, Ahmed, Zeeshan, Day, Kenneth, Jenkins, Brooklyn, Patel, Nidhi, Ryden, Kirk, Nadai, Joe, Banovich, Kathryn, Powers, Barbara, Edwards, Jeffrey, Steinberg, Jennifer, Fielder, Susan, Wong, Shukmei, Byron, Sara A., Izatt, Tyler, Zismann, Victoria, Boateng, Martin, Zhu, Zhanyang, Chuang, Han‐Yu, Trent, Jeffrey M., Haworth, David, Chon, Esther, Hendricks, William, Wang, Guannan
Published in Veterinary & comparative oncology (01.03.2024)
Published in Veterinary & comparative oncology (01.03.2024)
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Journal Article
A decade of systems biology
Chuang, Han-Yu, Hofree, Matan, Ideker, Trey
Published in Annual review of cell and developmental biology (10.11.2010)
Published in Annual review of cell and developmental biology (10.11.2010)
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33 Blood-based tumor mutation burden (bTMB) predicts response to immune checkpoint blockade-based combination therapy (ICBC) in advanced non-small cell lung cancer (NSCLC): a real-world (RW) analysis
Gordon, Sean, Pellini, Bruna, Barnett, Reagan, Liao, Jiemin, Quinn, Katie, Wienke, Sara, Drusbosky, Leylah, Zhang, Nicole, Lefterova, Martina, Lawrence, Lauren, Kiedrowski, Lesli, Eppler, Ross, Odegaard, Justin, Chuang, Han-Yu
Published in Journal for immunotherapy of cancer (01.11.2023)
Published in Journal for immunotherapy of cancer (01.11.2023)
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Protective effect of docosahexaenoic acid against brain injury in ischemic rats
Pan, Hung-Chuan, Kao, Tsung-Kuei, Ou, Yen-Chuan, Yang, Dar-Yu, Yen, Yu-Ju, Wang, Chun-Chiang, Chuang, Yu-Han, Liao, Su-Lan, Raung, Shue-Ling, Wu, Ching-Wen, Chiang, An-Na, Chen, Chun-Jung
Published in The Journal of nutritional biochemistry (01.09.2009)
Published in The Journal of nutritional biochemistry (01.09.2009)
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Beneficial effect of docosahexaenoic acid on cholestatic liver injury in rats
Chen, Wen-Ying, Lin, Shih-Yi, Pan, Hung-Chuan, Liao, Su-Lan, Chuang, Yu-Han, Yen, Yu-Ju, Lin, Szu-Yin, Chen, Chun-Jung
Published in The Journal of nutritional biochemistry (01.03.2012)
Published in The Journal of nutritional biochemistry (01.03.2012)
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Journal Article
B-cell activating factor and v-Myc myelocytomatosis viral oncogene homolog (c-Myc) influence progression of chronic lymphocytic leukemia
Zhang, Weizhou, Kater, Arnon P., Widhopf, George F., Chuang, Han-Yu, Enzler, Thomas, James, Danelle F., Poustovoitov, Maxim, Tseng, Ping-Hui, Janz, Siegfried, Hoh, Carl, Herschman, Harvey, Karin, Michael, Kipps, Thomas J.
Published in Proceedings of the National Academy of Sciences - PNAS (02.11.2010)
Published in Proceedings of the National Academy of Sciences - PNAS (02.11.2010)
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Journal Article
Stearic acid attenuates cholestasis-induced liver injury
Pan, Pin-Ho, Lin, Shih-Yi, Ou, Yen-Chuan, Chen, Wen-Ying, Chuang, Yu-Han, Yen, Yu-Ju, Liao, Su-Lan, Raung, Shue-Ling, Chen, Chun-Jung
Published in Biochemical and biophysical research communications (15.01.2010)
Published in Biochemical and biophysical research communications (15.01.2010)
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Pisces: an accurate and versatile variant caller for somatic and germline next-generation sequencing data
Dunn, Tamsen, Berry, Gwenn, Emig-Agius, Dorothea, Jiang, Yu, Lei, Serena, Iyer, Anita, Udar, Nitin, Chuang, Han-Yu, Hegarty, Jeff, Dickover, Michael, Klotzle, Brandy, Robbins, Justin, Bibikova, Marina, Peeters, Marc, Strömberg, Michael
Published in Bioinformatics (Oxford, England) (01.05.2019)
Published in Bioinformatics (Oxford, England) (01.05.2019)
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