QuPath: Open source software for digital pathology image analysis
Bankhead, Peter, Loughrey, Maurice B., Fernández, José A., Dombrowski, Yvonne, McArt, Darragh G., Dunne, Philip D., McQuaid, Stephen, Gray, Ronan T., Murray, Liam J., Coleman, Helen G., James, Jacqueline A., Salto-Tellez, Manuel, Hamilton, Peter W.
Published in Scientific reports (04.12.2017)
Published in Scientific reports (04.12.2017)
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Journal Article
Digital pathology and image analysis in tissue biomarker research
Hamilton, Peter W., Bankhead, Peter, Wang, Yinhai, Hutchinson, Ryan, Kieran, Declan, McArt, Darragh G., James, Jacqueline, Salto-Tellez, Manuel
Published in Methods (San Diego, Calif.) (01.11.2014)
Published in Methods (San Diego, Calif.) (01.11.2014)
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Journal Article
Integrated tumor identification and automated scoring minimizes pathologist involvement and provides new insights to key biomarkers in breast cancer
Bankhead, Peter, Fernández, José A, McArt, Darragh G, Boyle, David P, Li, Gerald, Loughrey, Maurice B, Irwin, Gareth W, Harkin, D Paul, James, Jacqueline A, McQuaid, Stephen, Salto-Tellez, Manuel, Hamilton, Peter W
Published in Laboratory investigation (01.01.2018)
Published in Laboratory investigation (01.01.2018)
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Journal Article
QUADrATiC: scalable gene expression connectivity mapping for repurposing FDA-approved therapeutics
O'Reilly, Paul G, Wen, Qing, Bankhead, Peter, Dunne, Philip D, McArt, Darragh G, McPherson, Suzanne, Hamilton, Peter W, Mills, Ken I, Zhang, Shu-Dong
Published in BMC bioinformatics (04.05.2016)
Published in BMC bioinformatics (04.05.2016)
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Journal Article
The prognostic significance of the aberrant extremes of p53 immunophenotypes in breast cancer
Boyle, David P, McArt, Darragh G, Irwin, Gareth, Wilhelm-Benartzi, Charlotte S, Lioe, Tong F, Sebastian, Elena, McQuaid, Stephen, Hamilton, Peter W, James, Jacqueline A, Mullan, Paul B, Catherwood, Mark A, Harkin, D Paul, Salto-Tellez, Manuel
Published in Histopathology (01.09.2014)
Published in Histopathology (01.09.2014)
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Journal Article
Epidermal growth factor receptor immunohistochemistry: new opportunities in metastatic colorectal cancer
Hutchinson, Ryan A, Adams, Richard A, McArt, Darragh G, Salto-Tellez, Manuel, Jasani, Bharat, Hamilton, Peter W
Published in Journal of translational medicine (07.07.2015)
Published in Journal of translational medicine (07.07.2015)
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Journal Article
Raman Microscopy for the Chemometric Analysis of Tumor Cells
Taleb, Ahcene, Diamond, James, McGarvey, John J, Beattie, J. Renwick, Toland, Carla, Hamilton, Peter W
Published in The journal of physical chemistry. B (05.10.2006)
Published in The journal of physical chemistry. B (05.10.2006)
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Journal Article
Evaluation of PTGS2 Expression, PIK3CA Mutation, Aspirin Use and Colon Cancer Survival in a Population-Based Cohort Study
Gray, Ronan T, Cantwell, Marie M, Coleman, Helen G, Loughrey, Maurice B, Bankhead, Peter, McQuaid, Stephen, O'Neill, Roisin F, Arthur, Kenneth, Bingham, Victoria, McGready, Claire, Gavin, Anna T, Cardwell, Chris R, Johnston, Brian T, James, Jacqueline A, Hamilton, Peter W, Salto-Tellez, Manuel, Murray, Liam J
Published in Clinical and translational gastroenterology (01.04.2017)
Published in Clinical and translational gastroenterology (01.04.2017)
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Journal Article
Connectivity Mapping for Candidate Therapeutics Identification Using Next Generation Sequencing RNA-Seq Data
McArt, Darragh G, Dunne, Philip D, Blayney, Jaine K, Salto-Tellez, Manuel, Van Schaeybroeck, Sandra, Hamilton, Peter W, Zhang, Shu-Dong
Published in PloS one (26.06.2013)
Published in PloS one (26.06.2013)
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Journal Article
SurfaceSlide: a multitouch digital pathology platform
Wang, Yinhai, Williamson, Kate E, Kelly, Paul J, James, Jacqueline A, Hamilton, Peter W
Published in PloS one (23.01.2012)
Published in PloS one (23.01.2012)
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Journal Article
A robust co-localisation measurement utilising z-stack image intensity similarities for biological studies
Wang, Yinhai, Ledgerwood, Craig, Grills, Claire, Fitzgerald, Denise C, Hamilton, Peter W
Published in PloS one (17.02.2012)
Published in PloS one (17.02.2012)
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Journal Article
PARP inhibition induces BAX/BAK-independent synthetic lethality of BRCA1-deficient non-small cell lung cancer
Paul, Ian, Savage, Kienan I, Blayney, Jaine K, Lamers, Elisabeth, Gately, Kathy, Kerr, Keith, Sheaff, Michael, Arthur, Kenneth, Richard, Derek J, Hamilton, Peter W, James, Jacqueline A, O'Byrne, Kenneth J, Harkin, D Paul, Quinn, Jennifer E, Fennell, Dean A
Published in The Journal of pathology (01.08.2011)
Published in The Journal of pathology (01.08.2011)
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Journal Article
A TMA de-arraying method for high throughput biomarker discovery in tissue research
Wang, Yinhai, Savage, Kienan, Grills, Claire, McCavigan, Andrena, James, Jacqueline A, Fennell, Dean A, Hamilton, Peter W
Published in PloS one (07.10.2011)
Published in PloS one (07.10.2011)
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Journal Article
Challenging the Cancer Molecular Stratification Dogma: Intratumoral Heterogeneity Undermines Consensus Molecular Subtypes and Potential Diagnostic Value in Colorectal Cancer
Dunne, Philip D, McArt, Darragh G, Bradley, Conor A, O'Reilly, Paul G, Barrett, Helen L, Cummins, Robert, O'Grady, Tony, Arthur, Ken, Loughrey, Maurice B, Allen, Wendy L, McDade, Simon S, Waugh, David J, Hamilton, Peter W, Longley, Daniel B, Kay, Elaine W, Johnston, Patrick G, Lawler, Mark, Salto-Tellez, Manuel, Van Schaeybroeck, Sandra
Published in Clinical cancer research (15.08.2016)
Published in Clinical cancer research (15.08.2016)
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Journal Article
Building a ‘Repository of Science’: The importance of integrating biobanks within molecular pathology programmes
Lewis, Claire, McQuaid, Stephen, Hamilton, Peter W, Salto-Tellez, Manuel, McArt, Darragh, James, Jacqueline A
Published in European journal of cancer (1990) (01.11.2016)
Published in European journal of cancer (1990) (01.11.2016)
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Journal Article
Validation of the systematic scoring of immunohistochemically stained tumour tissue microarrays using QuPath digital image analysis
Loughrey, Maurice B, Bankhead, Peter, Coleman, Helen G, Hagan, Ryan S, Craig, Stephanie, McCorry, Amy M B, Gray, Ronan T, McQuaid, Stephen, Dunne, Philip D, Hamilton, Peter W, James, Jacqueline A, Salto‐Tellez, Manuel
Published in Histopathology (01.08.2018)
Published in Histopathology (01.08.2018)
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Journal Article
Statin use, candidate mevalonate pathway biomarkers, and colon cancer survival in a population-based cohort study
Gray, Ronan T, Loughrey, Maurice B, Bankhead, Peter, Cardwell, Chris R, McQuaid, Stephen, O'Neill, Roisin F, Arthur, Kenneth, Bingham, Victoria, McGready, Claire, Gavin, Anna T, James, Jacqueline A, Hamilton, Peter W, Salto-Tellez, Manuel, Murray, Liam J, Coleman, Helen G
Published in British journal of cancer (06.06.2017)
Published in British journal of cancer (06.06.2017)
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Journal Article
Molecular pathology – The value of an integrative approach
Salto-Tellez, Manuel, James, Jacqueline A., Hamilton, Peter W.
Published in Molecular oncology (01.10.2014)
Published in Molecular oncology (01.10.2014)
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