Proximity-CLIP provides a snapshot of protein-occupied RNA elements in subcellular compartments
Benhalevy, Daniel, Anastasakis, Dimitrios G., Hafner, Markus
Published in Nature methods (01.12.2018)
Published in Nature methods (01.12.2018)
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Journal Article
Laboratory mice born to wild mice have natural microbiota and model human immune responses
Rosshart, Stephan P, Herz, Jasmin, Vassallo, Brian G, Hunter, Ashli, Wall, Morgan K, Badger, Jonathan H, McCulloch, John A, Anastasakis, Dimitrios G, Sarshad, Aishe A, Leonardi, Irina, Collins, Nicholas, Blatter, Joshua A, Han, Seong-Ji, Tamoutounour, Samira, Potapova, Svetlana, Foster St Claire, Mark B, Yuan, Wuxing, Sen, Shurjo K, Dreier, Matthew S, Hild, Benedikt, Hafner, Markus, Wang, David, Iliev, Iliyan D, Belkaid, Yasmine, Trinchieri, Giorgio, Rehermann, Barbara
Published in Science (American Association for the Advancement of Science) (02.08.2019)
Published in Science (American Association for the Advancement of Science) (02.08.2019)
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Journal Article
DHX36 prevents the accumulation of translationally inactive mRNAs with G4-structures in untranslated regions
Sauer, Markus, Juranek, Stefan A., Marks, James, De Magis, Alessio, Kazemier, Hinke G., Hilbig, Daniel, Benhalevy, Daniel, Wang, Xiantao, Hafner, Markus, Paeschke, Katrin
Published in Nature communications (03.06.2019)
Published in Nature communications (03.06.2019)
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Journal Article
Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP
Hafner, Markus, Landthaler, Markus, Burger, Lukas, Khorshid, Mohsen, Hausser, Jean, Berninger, Philipp, Rothballer, Andrea, Ascano, Manuel, Jungkamp, Anna-Carina, Munschauer, Mathias, Ulrich, Alexander, Wardle, Greg S., Dewell, Scott, Zavolan, Mihaela, Tuschl, Thomas
Published in Cell (02.04.2010)
Published in Cell (02.04.2010)
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Journal Article
Rapid image deconvolution and multiview fusion for optical microscopy
Guo, Min, Li, Yue, Su, Yijun, Lambert, Talley, Nogare, Damian Dalle, Moyle, Mark W., Duncan, Leighton H., Ikegami, Richard, Santella, Anthony, Rey-Suarez, Ivan, Green, Daniel, Beiriger, Anastasia, Chen, Jiji, Vishwasrao, Harshad, Ganesan, Sundar, Prince, Victoria, Waters, Jennifer C., Annunziata, Christina M., Hafner, Markus, Mohler, William A., Chitnis, Ajay B., Upadhyaya, Arpita, Usdin, Ted B., Bao, Zhirong, Colón-Ramos, Daniel, La Riviere, Patrick, Liu, Huafeng, Wu, Yicong, Shroff, Hari
Published in Nature biotechnology (01.11.2020)
Published in Nature biotechnology (01.11.2020)
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Journal Article
The splicing factor U2AF1 contributes to cancer progression through a noncanonical role in translation regulation
Palangat, Murali, Anastasakis, Dimitrios G, Fei, Dennis Liang, Lindblad, Katherine E, Bradley, Robert, Hourigan, Christopher S, Hafner, Markus, Larson, Daniel R
Published in Genes & development (01.05.2019)
Published in Genes & development (01.05.2019)
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Journal Article
Balancing of mitochondrial translation through METTL8-mediated m3C modification of mitochondrial tRNAs
Schöller, Eva, Marks, James, Marchand, Virginie, Bruckmann, Astrid, Powell, Christopher A., Reichold, Markus, Mutti, Christian Daniel, Dettmer, Katja, Feederle, Regina, Hüttelmaier, Stefan, Helm, Mark, Oefner, Peter, Minczuk, Michal, Motorin, Yuri, Hafner, Markus, Meister, Gunter
Published in Molecular cell (02.12.2021)
Published in Molecular cell (02.12.2021)
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Journal Article
microRNAs are biomarkers of oncogenic human papillomavirus infections
Wang, Xiaohong, Wang, Hsu-Kun, Li, Yang, Hafner, Markus, Banerjee, Nilam Sanjib, Tang, Shuang, Briskin, Daniel, Meyers, Craig, Chow, Louise T., Xie, Xing, Tuschl, Thomas, Zheng, Zhi-Ming
Published in Proceedings of the National Academy of Sciences - PNAS (18.03.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (18.03.2014)
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Journal Article
Epigenetic repression of antiviral genes by SARS-CoV-2 NSP1
Anastasakis, Dimitrios G, Benhalevy, Daniel, Çuburu, Nicolas, Altan-Bonnet, Nihal, Hafner, Markus
Published in PloS one (26.01.2024)
Published in PloS one (26.01.2024)
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Journal Article
Genome-wide identification of microRNA targets in human ES cells reveals a role for miR-302 in modulating BMP response
Lipchina, Inna, Elkabetz, Yechiel, Hafner, Markus, Sheridan, Robert, Mihailovic, Aleksandra, Tuschl, Thomas, Sander, Chris, Studer, Lorenz, Betel, Doron
Published in Genes & development (15.10.2011)
Published in Genes & development (15.10.2011)
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Journal Article
Enhancement of LIN28B-induced hematopoietic reprogramming by IGF2BP3
Wang, Saifeng, Chim, Bryan, Su, Yijun, Khil, Pavel, Wong, Madeline, Wang, Xiantao, Foroushani, Amir, Smith, Patrick T, Liu, Xiuhuai, Li, Rui, Ganesan, Sundar, Kanellopoulou, Chrysi, Hafner, Markus, Muljo, Stefan A
Published in Genes & development (01.08.2019)
Published in Genes & development (01.08.2019)
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Journal Article
Global target mRNA specification and regulation by the RNA-binding protein ZFP36
Mukherjee, Neelanjan, Jacobs, Nicholas C, Hafner, Markus, Kennington, Elizabeth A, Nusbaum, Jeffrey D, Tuschl, Thomas, Blackshear, Perry J, Ohler, Uwe
Published in Genome biology (08.01.2014)
Published in Genome biology (08.01.2014)
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Journal Article
Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing
Hafner, Markus, Landgraf, Pablo, Ludwig, Janos, Rice, Amanda, Ojo, Tolulope, Lin, Carolina, Holoch, Daniel, Lim, Cindy, Tuschl, Thomas
Published in Methods (San Diego, Calif.) (2008)
Published in Methods (San Diego, Calif.) (2008)
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Journal Article
The Human CCHC-type Zinc Finger Nucleic Acid-Binding Protein Binds G-Rich Elements in Target mRNA Coding Sequences and Promotes Translation
Benhalevy, Daniel, Gupta, Sanjay K., Danan, Charles H., Ghosal, Suman, Sun, Hong-Wei, Kazemier, Hinke G., Paeschke, Katrin, Hafner, Markus, Juranek, Stefan A.
Published in Cell reports (Cambridge) (21.03.2017)
Published in Cell reports (Cambridge) (21.03.2017)
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Journal Article
Profiling of m6A RNA modifications identified an age‐associated regulation of AGO2 mRNA stability
Min, Kyung‐Won, Zealy, Richard W., Davila, Sylvia, Fomin, Mikhail, Cummings, James C., Makowsky, Daniel, Mcdowell, Catherine H., Thigpen, Haley, Hafner, Markus, Kwon, Sang‐Ho, Georgescu, Constantin, Wren, Jonathan D., Yoon, Je‐Hyun
Published in Aging cell (01.06.2018)
Published in Aging cell (01.06.2018)
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Journal Article
Absolute quantification of microRNAs by using a universal reference
Bissels, Ute, Wild, Stefan, Tomiuk, Stefan, Holste, Angela, Hafner, Markus, Tuschl, Thomas, Bosio, Andreas
Published in RNA (Cambridge) (01.12.2009)
Published in RNA (Cambridge) (01.12.2009)
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Journal Article
RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries
Hafner, Markus, Renwick, Neil, Brown, Miguel, Mihailović, Aleksandra, Holoch, Daniel, Lin, Carolina, Pena, John T G, Nusbaum, Jeffrey D, Morozov, Pavel, Ludwig, Janos, Ojo, Tolulope, Luo, Shujun, Schroth, Gary, Tuschl, Thomas
Published in RNA (Cambridge) (01.09.2011)
Published in RNA (Cambridge) (01.09.2011)
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Journal Article
The viral and cellular microRNA targetome in lymphoblastoid cell lines
Skalsky, Rebecca L, Corcoran, David L, Gottwein, Eva, Frank, Christopher L, Kang, Dong, Hafner, Markus, Nusbaum, Jeffrey D, Feederle, Regina, Delecluse, Henri-Jacques, Luftig, Micah A, Tuschl, Thomas, Ohler, Uwe, Cullen, Bryan R
Published in PLoS pathogens (01.01.2012)
Published in PLoS pathogens (01.01.2012)
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