Comparison of quantitation methods in proteomics to define relevant toxicological information on AhR activation of HepG2 cells by BaP
Wang, Zhipeng, Karkossa, Isabel, Großkopf, Henning, Rolle-Kampczyk, Ulrike, Hackermüller, Jörg, von Bergen, Martin, Schubert, Kristin
Published in Toxicology (Amsterdam) (30.01.2021)
Published in Toxicology (Amsterdam) (30.01.2021)
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Journal Article
Prospects and challenges of multi-omics data integration in toxicology
Canzler, Sebastian, Schor, Jana, Busch, Wibke, Schubert, Kristin, Rolle-Kampczyk, Ulrike E., Seitz, Hervé, Kamp, Hennicke, von Bergen, Martin, Buesen, Roland, Hackermüller, Jörg
Published in Archives of toxicology (01.02.2020)
Published in Archives of toxicology (01.02.2020)
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Journal Article
AI for predicting chemical-effect associations at the chemical universe level—deepFPlearn
Schor, Jana, Scheibe, Patrick, Bernt, Matthias, Busch, Wibke, Lai, Chih, Hackermüller, Jörg
Published in Briefings in bioinformatics (20.09.2022)
Published in Briefings in bioinformatics (20.09.2022)
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Journal Article
multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection
Hoffmann, Steve, Otto, Christian, Doose, Gero, Tanzer, Andrea, Langenberger, David, Christ, Sabina, Kunz, Manfred, Holdt, Lesca M, Teupser, Daniel, Hackermüller, Jörg, Stadler, Peter F
Published in Genome biology (10.02.2014)
Published in Genome biology (10.02.2014)
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Journal Article
The primary transcriptome of the major human pathogen Helicobacter pylori
Vogel, Jörg, Sharma, Cynthia M, Hoffmann, Steve, Darfeuille, Fabien, Reignier, Jérémy, Findeiß, Sven, Sittka, Alexandra, Chabas, Sandrine, Reiche, Kristin, Hackermüller, Jörg, Reinhardt, Richard, Stadler, Peter F
Published in Nature (London) (11.03.2010)
Published in Nature (London) (11.03.2010)
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Journal Article
The challenge of the application of 'omics technologies in chemicals risk assessment: Background and outlook
Sauer, Ursula G., Deferme, Lize, Gribaldo, Laura, Hackermüller, Jörg, Tralau, Tewes, van Ravenzwaay, Ben, Yauk, Carole, Poole, Alan, Tong, Weida, Gant, Timothy W.
Published in Regulatory toxicology and pharmacology (01.12.2017)
Published in Regulatory toxicology and pharmacology (01.12.2017)
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Journal Article
The complete genome of the tetrachloroethene-respiring Epsilonproteobacterium Sulfurospirillum halorespirans
Goris, Tobias, Schenz, Benjamin, Zimmermann, Johannes, Lemos, Mikael, Hackermüller, Jörg, Schubert, Torsten, Diekert, Gabriele
Published in Journal of biotechnology (10.08.2017)
Published in Journal of biotechnology (10.08.2017)
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Journal Article
Alzheimer-related genes show accelerated evolution
Nitsche, Anne, Arnold, Christian, Ueberham, Uwe, Reiche, Kristin, Fallmann, Jörg, Hackermüller, Jörg, Horn, Friedemann, Stadler, Peter F., Arendt, Thomas
Published in Molecular psychiatry (01.10.2021)
Published in Molecular psychiatry (01.10.2021)
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Journal Article
Fast mapping of short sequences with mismatches, insertions and deletions using index structures
Hoffmann, Steve, Otto, Christian, Kurtz, Stefan, Sharma, Cynthia M, Khaitovich, Philipp, Vogel, Jörg, Stadler, Peter F, Hackermüller, Jörg
Published in PLoS computational biology (01.09.2009)
Published in PLoS computational biology (01.09.2009)
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Journal Article
RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription
Kapranov, Philipp, Cheng, Jill, Dike, Sujit, Nix, David A., Duttagupta, Radharani, Willingham, Aarron T., Stadler, Peter F., Hertel, Jana, Hackermüller, Jörg, Hofacker, Ivo L., Bell, Ian, Cheung, Evelyn, Drenkow, Jorg, Dumais, Erica, Patel, Sandeep, Helt, Gregg, Ganesh, Madhavan, Ghosh, Srinka, Piccolboni, Antonio, Sementchenko, Victor, Tammana, Hari, Gingeras, Thomas R.
Published in Science (American Association for the Advancement of Science) (08.06.2007)
Published in Science (American Association for the Advancement of Science) (08.06.2007)
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Journal Article
Maternal phthalate exposure promotes allergic airway inflammation over 2 generations through epigenetic modifications
Jahreis, Susanne, PhD, Trump, Saskia, PhD, Bauer, Mario, MD, Bauer, Tobias, PhD, Thürmann, Loreen, MSc, Feltens, Ralph, PhD, Wang, Qi, PhD, Gu, Lei, PhD, Grützmann, Konrad, PhD, Röder, Stefan, PhD, Averbeck, Marco, MD, Weichenhan, Dieter, PhD, Plass, Christoph, PhD, Sack, Ulrich, MD, Borte, Michael, MD, Dubourg, Virginie, MSc, Schüürmann, Gerrit, PhD, Simon, Jan C., MD, von Bergen, Martin, PhD, Hackermüller, Jörg, PhD, Eils, Roland, PhD, Lehmann, Irina, PhD, Polte, Tobias, PhD
Published in Journal of allergy and clinical immunology (01.02.2018)
Published in Journal of allergy and clinical immunology (01.02.2018)
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Journal Article
HBEGF-TNF induce a complex outer retinal pathology with photoreceptor cell extrusion in human organoids
Völkner, Manuela, Wagner, Felix, Steinheuer, Lisa Maria, Carido, Madalena, Kurth, Thomas, Yazbeck, Ali, Schor, Jana, Wieneke, Stephanie, Ebner, Lynn J. A., Del Toro Runzer, Claudia, Taborsky, David, Zoschke, Katja, Vogt, Marlen, Canzler, Sebastian, Hermann, Andreas, Khattak, Shahryar, Hackermüller, Jörg, Karl, Mike O.
Published in Nature communications (19.10.2022)
Published in Nature communications (19.10.2022)
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Journal Article
Interleukin-6–dependent survival of multiple myeloma cells involves the Stat3-mediated induction of microRNA-21 through a highly conserved enhancer
Löffler, Dennis, Brocke-Heidrich, Katja, Pfeifer, Gabriele, Stocsits, Claudia, Hackermüller, Jörg, Kretzschmar, Antje K., Burger, Renate, Gramatzki, Martin, Blumert, Conny, Bauer, Kay, Cvijic, Helena, Ullmann, A. Kerstin, Stadler, Peter F., Horn, Friedemann
Published in Blood (15.08.2007)
Published in Blood (15.08.2007)
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Journal Article
The Eco‐Exposome Concept: Supporting an Integrated Assessment of Mixtures of Environmental Chemicals
Scholz, Stefan, Nichols, John W., Escher, Beate I., Ankley, Gerald T., Altenburger, Rolf, Blackwell, Brett, Brack, Werner, Burkhard, Lawrence, Collette, Timothy W., Doering, Jon A., Ekman, Drew, Fay, Kellie, Fischer, Fabian, Hackermüller, Jörg, Hoffman, Joel C., Lai, Chih, Leuthold, David, Martinovic‐Weigelt, Dalma, Reemtsma, Thorsten, Pollesch, Nathan, Schroeder, Anthony, Schüürmann, Gerrit, von Bergen, Martin
Published in Environmental toxicology and chemistry (01.01.2022)
Published in Environmental toxicology and chemistry (01.01.2022)
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Journal Article
Roquin targets mRNAs in a 3′-UTR-specific manner by different modes of regulation
Essig, Katharina, Kronbeck, Nina, Guimaraes, Joao C., Lohs, Claudia, Schlundt, Andreas, Hoffmann, Anne, Behrens, Gesine, Brenner, Sven, Kowalska, Joanna, Lopez-Rodriguez, Cristina, Jemielity, Jacek, Holtmann, Helmut, Reiche, Kristin, Hackermüller, Jörg, Sattler, Michael, Zavolan, Mihaela, Heissmeyer, Vigo
Published in Nature communications (19.09.2018)
Published in Nature communications (19.09.2018)
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Journal Article
uap: reproducible and robust HTS data analysis
Kämpf, Christoph, Specht, Michael, Scholz, Alexander, Puppel, Sven-Holger, Doose, Gero, Reiche, Kristin, Schor, Jana, Hackermüller, Jörg
Published in BMC bioinformatics (12.12.2019)
Published in BMC bioinformatics (12.12.2019)
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Journal Article
Applying 'omics technologies in chemicals risk assessment: Report of an ECETOC workshop
Buesen, Roland, Chorley, Brian N., da Silva Lima, Beatriz, Daston, George, Deferme, Lize, Ebbels, Timothy, Gant, Timothy W., Goetz, Amber, Greally, John, Gribaldo, Laura, Hackermüller, Jörg, Hubesch, Bruno, Jennen, Danyel, Johnson, Kamin, Kanno, Jun, Kauffmann, Hans-Martin, Laffont, Madeleine, McMullen, Patrick, Meehan, Richard, Pemberton, Mark, Perdichizzi, Stefania, Piersma, Aldert H., Sauer, Ursula G., Schmidt, Kerstin, Seitz, Hervé, Sumida, Kayo, Tollefsen, Knut E., Tong, Weida, Tralau, Tewes, van Ravenzwaay, Ben, Weber, Ralf J.M., Worth, Andrew, Yauk, Carole, Poole, Alan
Published in Regulatory toxicology and pharmacology (01.12.2017)
Published in Regulatory toxicology and pharmacology (01.12.2017)
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Journal Article